Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400854.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4023.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 799

Length: 1333
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.17

Warning! 694 characters in sequence are not A, C, G, or T


Found at i:1136 original size:172 final size:170

Alignment explanation


    Indices: 850--1333  Score: 585
    Period size: 172  Copynumber: 2.8  Consensus size: 170

        840 TGTTTTAACC

                                                                            *
        850 AAAAATGTACAAAAAATTCAAATTTAAATCAATTTTGAGATTACAAAACTATATAAAGTGAGTAG
          1 AAAAATGTACAAAAAATTCAAATTTAAATCAATTTTGAGATTACAAAACTATATAAAGTGAGTAA

                                                                         *   
        915 TAAGGCTTTTGAAGGAATTGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTATTC
         66 TAAGGCTTTTGAAGGAA-TGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTCTTC

                                      *               
        980 ATGTTTCTAAAGCTAGACATTCAATCCTAGTCGGTTATAATA
        130 ATGTTTCTAAAGCTAGACATTCAATCATAGTCGGTT-TAATA

                         *    *                        *     *               
       1022 AAAAATGTACAAAGAATTAAAATTTAAATCAATTTTGAGATTATAAAACCATATAAAGTGAGTAA
          1 AAAAATGTACAAAAAATTCAAATTTAAATCAATTTTGAGATTACAAAACTATATAAAGTGAGTAA

                           *    *                                 * *        
       1087 TAAGGCTTTTGAAGGCATAGATGACTATAAATGGACTTCTT-TTGCCAATGAATGCCTTTTTCTT
         66 TAAGGCTTTTGAAGGAAT-GGTGACTATAAATGGACTT-TTCTTGCCAATGAATACTTTTTTCTT

            *  *   * *                *      *        
       1151 TATATTTTTCAAGCTAGACATTCAATTATAGTCTGTTTAATA
        129 CATGTTTCTAAAGCTAGACATTCAATCATAGTCGGTTTAATA

                   *** *           *  *         **                 *     * * 
       1193 AAAGATACAAAAAAAAAATTCAACTTAAAATCAATTACG-GCATTACAAAACTATTTAAAGAGTG
          1 AAA-A-ATGTACAAAAAATTCAAATTTAAATCAATTTTGAG-ATTACAAAACTATATAAAGTGAG

                  *      *  * *                   *                          
       1257 TAATAATGCTTTTTAACGTATGTGTGACTATAAATGGATTTTTCTTGCCAATGAATACTTTTTTC
         63 TAATAAGGCTTTTGAAGGAATG-GTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTC

                        
       1322 TTCATGTTTCTA
        127 TTCATGTTTCTA


Statistics
Matches: 261,  Mismatches: 44, Indels: 13
        0.82            0.14        0.04

Matches are distributed among these distances:
 171    9  0.03
 172  149  0.57
 173  103  0.39

ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36


Consensus pattern (170 bp):   
AAAAATGTACAAAAAATTCAAATTTAAATCAATTTTGAGATTACAAAACTATATAAAGTGAGTAA
TAAGGCTTTTGAAGGAATGGTGACTATAAATGGACTTTTCTTGCCAATGAATACTTTTTTCTTCA
TGTTTCTAAAGCTAGACATTCAATCATAGTCGGTTTAATA

Done.