Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397614.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4280.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4508
ACGTcount: A:0.27, C:0.14, G:0.10, T:0.23

Warning! 1169 characters in sequence are not A, C, G, or T


Found at i:3583 original size:22 final size:22

Alignment explanation


    Indices: 3555--3604  Score: 100
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       3545 AAAATTTCCC

                                  
       3555 AGCGCTACGACGCTACTTCTCT
          1 AGCGCTACGACGCTACTTCTCT

                                  
       3577 AGCGCTACGACGCTACTTCTCT
          1 AGCGCTACGACGCTACTTCTCT

                  
       3599 AGCGCT
          1 AGCGCT

       3605 GCAGCACTGA


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   28  1.00

ACGTcount: A:0.18, C:0.36, G:0.20, T:0.26


Consensus pattern (22 bp):   
AGCGCTACGACGCTACTTCTCT
Done.