Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400865.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4033.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1143
ACGTcount: A:0.19, C:0.08, G:0.07, T:0.22

Warning! 495 characters in sequence are not A, C, G, or T


Found at i:517 original size:171 final size:172

Alignment explanation


    Indices: 231--571  Score: 483
    Period size: 171  Copynumber: 2.0  Consensus size: 172

        221 NNNNNNNNNN

                                                         *                   
        231 AATAGTTTTATAATCTCATAATTGATTTTAAGTTGAACTTTTTTACATTTTTTAATTAAAACGTA
          1 AATAGTTTTATAATCTCATAATTGATTTTAAGTTGAACTTTTTTAAATTTTTTAATTAAAACGTA

                                *                               *   *        
        296 CTACAATTGAATGTCTACCTTGAGAAATGTAAAAAAACAGGCATTCATTGATGAGAGAAGTCCAT
         66 CTACAATTGAATGTCTACCTCGAGAAATGTAAAAAAACAGGCATTCATTGATAAGAAAAGTCCAT

                       *            *                 
        361 TTAGAGTCACCTAGTCCTTCAAAAGGCCTATTACTCGCTTCA
        131 TTAGAGTCACCCAGTCCTTCAAAAAGCCTATTACTCGCTTCA

                                          *                      **          
        403 AATAGTTTTATAATCTCATAATTGATTTTACGTTGAA-TTTTTTAAATTTTTTTGTTAAAACAG-
          1 AATAGTTTTATAATCTCATAATTGATTTTAAGTTGAACTTTTTTAAATTTTTTAATTAAAAC-GT

                *      *                       *       *                     
        466 ACTATAATTGATTGTCTACCTCGAGAAACGTGT-AGAAAA-AGTCATTCATTGATAAGAAAAGTC
         65 ACTACAATTGAATGTCTACCTCGAGAAA--TGTAAAAAAACAGGCATTCATTGATAAGAAAAGTC

             *              *             *            
        529 CGTTTAGAGTCACCCATTCCTTCAAAAAGCTTATTACTCGCTT
        128 CATTTAGAGTCACCCAGTCCTTCAAAAAGCCTATTACTCGCTT

        572 TNNNNNNNNN


Statistics
Matches: 150,  Mismatches: 16, Indels: 7
        0.87            0.09        0.04

Matches are distributed among these distances:
 171  105  0.70
 172   42  0.28
 173    3  0.02

ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37


Consensus pattern (172 bp):   
AATAGTTTTATAATCTCATAATTGATTTTAAGTTGAACTTTTTTAAATTTTTTAATTAAAACGTA
CTACAATTGAATGTCTACCTCGAGAAATGTAAAAAAACAGGCATTCATTGATAAGAAAAGTCCAT
TTAGAGTCACCCAGTCCTTCAAAAAGCCTATTACTCGCTTCA
Done.