Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400869.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4037.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2098
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.31

Warning! 288 characters in sequence are not A, C, G, or T


Found at i:1878 original size:17 final size:16

Alignment explanation


    Indices: 1838--1874  Score: 74
    Period size: 16  Copynumber: 2.3  Consensus size: 16

       1828 TATAAATGGG

                            
       1838 CTTTTCTTACCAATGC
          1 CTTTTCTTACCAATGC

                            
       1854 CTTTTCTTACCAATGC
          1 CTTTTCTTACCAATGC

                 
       1870 CTTTT
          1 CTTTT

       1875 TCTTCACATT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   21  1.00

ACGTcount: A:0.16, C:0.30, G:0.05, T:0.49


Consensus pattern (16 bp):   
CTTTTCTTACCAATGC
Done.