Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397615.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5150.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4469
ACGTcount: A:0.23, C:0.12, G:0.12, T:0.22

Warning! 1389 characters in sequence are not A, C, G, or T


Found at i:3894 original size:9 final size:9

Alignment explanation


    Indices: 3880--3907  Score: 56
    Period size: 9  Copynumber: 3.1  Consensus size: 9

       3870 CGATAGTTGG

                     
       3880 ATAAGTAGT
          1 ATAAGTAGT

                     
       3889 ATAAGTAGT
          1 ATAAGTAGT

                     
       3898 ATAAGTAGT
          1 ATAAGTAGT

             
       3907 A
          1 A

       3908 ATAAATCAAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   19  1.00

ACGTcount: A:0.46, C:0.00, G:0.21, T:0.32


Consensus pattern (9 bp):   
ATAAGTAGT
Done.