Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400877.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4044.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 958

Length: 1598
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.26

Warning! 431 characters in sequence are not A, C, G, or T


Found at i:973 original size:170 final size:170

Alignment explanation


    Indices: 656--1069  Score: 514
    Period size: 171  Copynumber: 2.4  Consensus size: 170

        646 TTAGGGCACG

                                   *        *                             *  
        656 CATTCAATTATAGTCTGTTTTAAATAAAAATTATAAAACAATTCAACTTAAAATCAATTACAAGA
          1 CATTCAATTATAGTCTGTTTTAACTAAAAA-TGTAAAACAATTCAACTTAAAATCAA-TA-ATGA

                                            *       *     *   *        *     
        721 C-TATAAAATCATTTAAAGCAAGTAATAAGGCTTTTGAAGGAATAGGAGATTATAAATGGACTTT
         63 CTTATAAAATCATTTAAAGCAAGTAATAAGGCCTTTGAAGAAATAGAAGACTATAAATGCACTTT

                       *                               
        785 TCTTACCAATCTATGCTTTTTT-TTTACGTTTCTCAAGGTAAA
        128 TCTTACCAATCAATGCTTTTTTCTTTACGTTTCTCAAGGTAAA

                                                                             
        827 CATTC-ATTCATAGTCTGTTTTAACTAAAAATGTAAAACAATTCAACTTAAAATCAATAATGACA
          1 CATTCAATT-ATAGTCTGTTTTAACTAAAAATGTAAAACAATTCAACTTAAAATCAATAATGAC-

                                *                                 *          
        891 TTATAAAA-CGATTTAAAGCGAGTAATAAGGCCTTTGAAGAAATAGAAGACTATTAATGCACTTT
         64 TTATAAAATC-ATTTAAAGCAAGTAATAAGGCCTTTGAAGAAATAGAAGACTATAAATGCACTTT

             *  * *   *                *      *        
        955 TTTTGCTAATGAATGCTTTTTTCTTTATGTTTCTTAAGGTAAA
        128 TCTTACCAATCAATGCTTTTTTCTTTACGTTTCTCAAGGTAAA

                            *       *                     * *         *     *
        998 CATTCAATTATAGTCTTTTTTAACCAAAAATGTAAAGA-AATTCAAGTAAAAATCAATTATGAGG
          1 CATTCAATTATAGTCTGTTTTAACTAAAAATGTAAA-ACAATTCAACTTAAAATCAATAATGA-C

                    
       1062 TTATAAAA
         64 TTATAAAA

       1070 NNNNNNNNNN


Statistics
Matches: 212,  Mismatches: 23, Indels: 16
        0.84            0.09        0.06

Matches are distributed among these distances:
 168    4  0.02
 169    3  0.01
 170   99  0.47
 171  102  0.48
 172    4  0.02

ACGTcount: A:0.41, C:0.12, G:0.11, T:0.36


Consensus pattern (170 bp):   
CATTCAATTATAGTCTGTTTTAACTAAAAATGTAAAACAATTCAACTTAAAATCAATAATGACTT
ATAAAATCATTTAAAGCAAGTAATAAGGCCTTTGAAGAAATAGAAGACTATAAATGCACTTTTCT
TACCAATCAATGCTTTTTTCTTTACGTTTCTCAAGGTAAA

Done.