Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400879.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4046.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.29, C:0.10, G:0.09, T:0.29

Warning! 258 characters in sequence are not A, C, G, or T


Found at i:295 original size:171 final size:161

Alignment explanation


    Indices: 48--361  Score: 367
    Period size: 171  Copynumber: 1.9  Consensus size: 161

         38 CATTAAAACA

                   *                *                            *      *****
         48 GATTATAGTTGAATGTCTACCTTGTGAAACATGAAGAAAAAGATATCCATTGGCAAGAAANNNNN
          1 GATTATAATTGAATGTCTACCTTGGGAAACATGAAGAAAAAGATATCCATTGGAAAGAAAAGTCC

            *****                                                   *   *    
        113 NNNNNTAGTAAACCATGCCTTCGAAAGCCTTATTACTCGCGTTAAATATTTTTATACCCTCATAA
         66 ATTTATAGTAAACCATGCCTTCGAAAGCCTTATTACTCGCGTTAAATATTTTTATAACCTAATAA

                                           
        178 TTGATTTAAATTTGAATTTTTTTATATTTTT
        131 TTGATTTAAATTTGAATTTTTTTATATTTTT

                                        *                                    
        209 NNNNNNNNNNGATTATAATTGAATGTCTGCCTTGGGAAACATGAAGAAAAAGATATCCATTGGAA
          1 ----------GATTATAATTGAATGTCTACCTTGGGAAACATGAAGAAAAAGATATCCATTGGAA

                                             *                *              
        274 AGAAAAGTCCATTTATAGTAAACCATGCCTTCGGAAGCCTTATTACTCGCTTTAAATATTTTTAT
         56 AGAAAAGTCCATTTATAGTAAACCATGCCTTCGAAAGCCTTATTACTCGCGTTAAATATTTTTAT

                             *     
        339 AACCTAATAATTGATTTTAATTT
        121 AACCTAATAATTGATTTAAATTT

        362 NNNNNNNNNN


Statistics
Matches: 124,  Mismatches: 19, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
 171  124  1.00

ACGTcount: A:0.33, C:0.13, G:0.13, T:0.34


Consensus pattern (161 bp):   
GATTATAATTGAATGTCTACCTTGGGAAACATGAAGAAAAAGATATCCATTGGAAAGAAAAGTCC
ATTTATAGTAAACCATGCCTTCGAAAGCCTTATTACTCGCGTTAAATATTTTTATAACCTAATAA
TTGATTTAAATTTGAATTTTTTTATATTTTT
Done.