Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400888.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4054.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1561
ACGTcount: A:0.30, C:0.09, G:0.10, T:0.27

Warning! 368 characters in sequence are not A, C, G, or T


Found at i:801 original size:171 final size:171

Alignment explanation


    Indices: 624--941  Score: 403
    Period size: 171  Copynumber: 1.9  Consensus size: 171

        614 NNNTGGGTGA

                     *      *                               *             *  
        624 CTATAAATAGACTTTTGATGCCAATGAATGACTTTTTCTTCATGCTTTTC-AAGGA-AAACATTC
          1 CTATAAATACACTTTTCATGCCAATGAATGACTTTTTCTTCATG-TTTCCTAA-GACAAACAATC

              *                                     *            *           
        687 GATTC-T-ATCCTGTTTTAACAAAAAATATAAAACA-ATTTAACTTAAAATCAGTTACGAGATTA
         64 -AATCATAAT-CTGTTTTAACAAAAAATATAAAA-ATATTCAACTTAAAATCAATTACGAGATTA

                 *         *                              
        749 CAAAATCATTTAAAGTGAGTAATAAGTTTTTTAAAGGAATAGAAAG
        126 CAAAACCATTTAAAGCGAGTAATAAGTTTTTTAAAGGAATAGAAAG

                       *     *                                      *        
        795 CTATAAATACAGTTTTCTTGCCAATGAATGACTTTTTCTTCATGTTTCCTAAGACAGACAATCAA
          1 CTATAAATACACTTTTCATGCCAATGAATGACTTTTTCTTCATGTTTCCTAAGACAAACAATCAA

                   *         *                            *            **    
        860 TCATAATTTGTTTTAACTAAAAATATAAAAATATTCAACTTAAAATTAATTACGAGATTGTAAAA
         66 TCATAATCTGTTTTAACAAAAAATATAAAAATATTCAACTTAAAATCAATTACGAGATTACAAAA

                             
        925 CCATTTAAAGCGAGTAA
        131 CCATTTAAAGCGAGTAA

        942 AAATACTTTT


Statistics
Matches: 125,  Mismatches: 17, Indels: 10
        0.82            0.11        0.07

Matches are distributed among these distances:
 170   10  0.08
 171  113  0.90
 172    2  0.02

ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35


Consensus pattern (171 bp):   
CTATAAATACACTTTTCATGCCAATGAATGACTTTTTCTTCATGTTTCCTAAGACAAACAATCAA
TCATAATCTGTTTTAACAAAAAATATAAAAATATTCAACTTAAAATCAATTACGAGATTACAAAA
CCATTTAAAGCGAGTAATAAGTTTTTTAAAGGAATAGAAAG

Done.