Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018400897.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4061.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5510
ACGTcount: A:0.30, C:0.10, G:0.11, T:0.30
Warning! 1092 characters in sequence are not A, C, G, or T
Found at i:523 original size:171 final size:170
Alignment explanation
Indices: 86--1734 Score: 1550
Period size: 171 Copynumber: 9.7 Consensus size: 170
76 TGGCTTATTA
* * * * * *
86 TCTACGTCGAGAAACGTGAAGAAAAAAAGAATTCATTGGTAAGAAAAGTCCCTTTATAGTCATCC
1 TCTACCTCGAGAAACATGAAG-AAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCC
* * * * **
151 ATTCCTTGAAAAGCCTTCTTACTCACTTTAAAAGG-TTCTATAATCTCATAATTGATTTTAAGCC
65 ATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGCTT-TATAATCTCAAAATTGATTTTAAGTT
* *
215 GAATTATTTT-CATATTTTAGGATAAAACAGACTA-AATTGAATG
129 GAATT-TTTTACAT-TTTT-GGTTAAAACAGATTATAATTGAATG
* **
258 TCTACCTCGAGAAACATGAA-AAAAAAACATTCATTGGCAA-AAAAGTCCATTTATAGTCACTTA
1 TCTACCTCGAGAAACATGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCA
* ** * * *
321 TTGCTTCAAAAGCCTTATTACTCGTTTTAAATGACCTTGTAATCTCAAAATTGATTTTAAGTTGA
66 TTCCTTCAAAAGCCTTATTACTCACTTTAAATGGCTTTATAATCTCAAAATTGATTTTAAGTTGA
* * *
386 ATGTTTTT-CAGGTTTTGGTGAAAACAAATTATAATTGAATG
131 AT-TTTTTACA-TTTTTGGTTAAAACAGATTATAATTGAATG
* ** * *
427 TCAACCTCGAGAAACGCGAAGAAAAAAACATTCATTGGCAAGAAAAGTCCATTTATAATCACCCA
1 TCTACCTCGAGAAACATGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCA
** ** * * *
492 TTTTTTCAAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTCGA
66 TTCCTTCAAAAGCCTTATTACTCACTTTAAATGGCTTTATAATCTCAAAATTGATTTTAAGTTGA
* * * *
557 ATTTCTTTATAGTTTTT-GTTAAAACAAACTA-AATTAAATG
131 ATTT-TTTACA-TTTTTGGTTAAAACAGATTATAATTGAATG
* * * * * * * * *
597 TCAACTTTG-GAAAACATGAACAAAAAAGTATTCATTGGCAAGAAAAATTCATTTATGGTCACCT
1 TCTACCTCGAG-AAACATGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCC
* * * * *
661 ATTCCTTCCAAAA-CCTTATTACTTACTTTAAATGGCTTTATAATCTCATAATTAATTTTAGGCT
65 ATTCCTT-CAAAAGCCTTATTACTCACTTTAAATGGCTTTATAATCTCAAAATTGATTTTAAGTT
* * * * *
725 GAATTTTCTTACAATTGTT-ATTAGAACAGTTTATAATTAAATG
129 GAATTTT-TTAC-ATTTTTGGTTAAAACAGATTATAATTGAATG
* * * * * * *
768 TCTACCTTG-GAAAACATAAAGAAAAAAGAATTCATTGACAA-AAGAAGTCTATTTACAGTCACG
1 TCTACCTCGAG-AAACATGAAGAAAAAAGCATTCATTGGCAAGAA-AAGTCCATTTATAGTCACC
* * * *
831 CATTCCTT-AAAGGCCTTATTACAT-GCTTTCAACGGCTTTATAATCTCAAAATTGATTTTAAGT
64 CATTCCTTCAAAAGCCTTATTAC-TCACTTTAAATGGCTTTATAATCTCAAAATTGATTTTAAGT
* * *
894 TGAATATTTTTACAGTTTTGGTTAAATCAAATTATAATTGAATG
128 TGAAT-TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
* * * **
938 TCTACCTCGAGAAATATGAA-AAAAAAGCATTCATTGGCAAGAAAAGTCCTTTTATAGTTACTTA
1 TCTACCTCGAGAAACATGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCA
** * * * * * *
1002 TTTTTTGAAAAGCCTTATTACTCACTTTAAATGGTTTTATTAGC-CAAAAATTGATTTTATGTTC
66 TTCCTTCAAAAGCCTTATTACTCACTTTAAATGGCTTTATAATCTC-AAAATTGATTTTAAGTTG
* *
1066 AATTGTTTTTACCTTTTTCGTT-AAACAGATTATAATTGAATG
130 AA-T-TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
* ** * * **
1108 TCTACCTTGAGAAATGTGAAGAAAAATGCATTTATTGATG-AA-AAAAGTTAATTTATAGTCACC
1 TCTACCTCGAGAAACATGAAGAAAAAAGCATTCATTG--GCAAGAAAAGTCCATTTATAGTCACC
* * * * * *
1171 CATTTCTTCTAAAGCTTTATTACTTACCTCAAAT-GCTTTTATAATCT-AATAATTGATTTTAAG
64 CATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGC-TTTATAATCTCAA-AATTGATTTTAAG
*
1234 TTGAATTTTTTTACATTTTTGGCTT-AAACAGAATATAATTGAATG
127 TTGAA-TTTTTTACATTTTTGG-TTAAAACAGATTATAATTGAATG
* * * * * * * * * *
1279 TCTACCTCAAGAAACCTAAAGTAACAAATCATTTATTAGTAAGAAATGTTCATTTATAGTCACCC
1 TCTACCTCGAGAAACATGAAG-AAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCC
* *
1344 ATTCCTTCAAAACCCTTATTACTCGCTTTAAATGG-TTTCATAATCTCAAAATTGATTTTAAGTT
65 ATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGCTTT-ATAATCTCAAAATTGATTTTAAGTT
* **
1408 AAATATTTTTACATTTTTTATTAAAACAGATTATAATTGAATG
129 GAAT-TTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
* * *
1451 TCTACCTTGAGAAATATGAA-AAAAAATGCATTCATTGGCAAGAAAAGTCCATTTACAGTCACCC
1 TCTACCTCGAGAAACATGAAGAAAAAA-GCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCC
* * * * *
1515 ATTCCTTCAAAAGCCTTATTACACACTTTAAATGGTTTTATTATCTCAAAATTGATTTTATGTTC
65 ATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGCTTTATAATCTCAAAATTGATTTTAAGTTG
* * *
1580 AATTTTTTTTACATTTTTGATTAAAACAGACTATGATTGAATG
130 AA--TTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
* * * * * * * *
1623 TCTA-CTCCAAGAAACGTGAAGAGAAAGGCATTTATTGACAAGAAAAGTCTATTTATACTCACCC
1 TCTACCT-CGAGAAACATGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCC
* * *
1687 ATTCCTTCAGAAGCCTTATTACTCGCTTTAAATGGTTTTATAATCTCA
65 ATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGCTTTATAATCTCA
1735 NNNNNNNNNN
Statistics
Matches: 1216, Mismatches: 216, Indels: 90
0.80 0.14 0.06
Matches are distributed among these distances:
168 11 0.01
169 156 0.13
170 362 0.30
171 397 0.33
172 281 0.23
173 9 0.01
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (170 bp):
TCTACCTCGAGAAACATGAAGAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCA
TTCCTTCAAAAGCCTTATTACTCACTTTAAATGGCTTTATAATCTCAAAATTGATTTTAAGTTGA
ATTTTTTACATTTTTGGTTAAAACAGATTATAATTGAATG
Found at i:878 original size:340 final size:340
Alignment explanation
Indices: 94--1734 Score: 1500
Period size: 340 Copynumber: 4.8 Consensus size: 340
84 TATCTACGTC
* * ** * * * *
94 GAGAAACGTGAAGAAAAAAAGAATTCATTGGTAAGAAAAGTCCCTTTATAGTCATCCATTCCTTG
1 GAGAAACATAAAG-AAAAAAGAATTCATTGACAAGAAAAGTCCATTTACAGTCACCCATTCCTTC
* * *
159 AAAAGCCTTCTTAC-TCACTTTAAAAGG-TTCTATAATCTCATAATTGATTTTAAGCCGAATTAT
65 AAAAGCCTTATTACAT-ACTTTAAATGGCTT-TATAATCTCATAATTGATTTTAAGTCGAATT-T
* * * *
222 TTTCATATTTTAGGATAAAACAGACTA-AATTGAATGTCTACCTCGAGAAACATGAAAAAAAAAC
127 TTT-ACATTTT-GGTTAAAACAAACTATAATTGAATGTCTACCTCGAGAAACATGAAAAAAAAGC
* * **
286 ATTCATTGGCAA-AAAAGTCCATTTATAGTCACTTATTGCTTCAAAAGCCTTATTACTCGTTTTA
190 ATTCATTGGCAAGAAAAGTCCATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTA
* * * * ** ** * *
350 AATGACCTTGTAATCTCAAAATTGATTTTAAGTTGAATGTTTTT-CAGGTTTTGGTGAAAACAAA
255 AATGGCTTTATAATCTCAAAATTGATTTTAAGTTGAATATTTTTACAATTTTTCATTAAAACAGA
* *
414 TTATAATTGAATGTCAACCTC
320 TTATAATTGAATGTCTACCTT
*** * * * **
435 GAGAAACGCGAAGAAAAAA-ACATTCATTGGCAAGAAAAGTCCATTTATAATCACCCATTTTTTC
1 GAGAAACATAAAGAAAAAAGA-ATTCATTGACAAGAAAAGTCCATTTACAGTCACCCATTCCTTC
* * *
499 AAAAGCCTTATTACTTGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTCGAATTTCTT
65 AAAAGCCTTATTACATACTTTAAATGGCTTTATAATCTCATAATTGATTTTAAGTCGAATTT-TT
* * * * * * *
564 TATAGTTTTTGTTAAAACAAACTA-AATTAAATGTCAACTTTG-GAAAACATGAACAAAAAAGTA
129 TACA-TTTTGGTTAAAACAAACTATAATTGAATGTCTACCTCGAG-AAACATGAA-AAAAAAGCA
* * * *
627 TTCATTGGCAAGAAAAATTCATTTATGGTCACCTATTCCTTCCAAAA-CCTTATTACTTACTTTA
191 TTCATTGGCAAGAAAAGTCCATTTATAGTCACCTATTCCTT-CAAAAGCCTTATTACTCACTTTA
* * * * * *
691 AATGGCTTTATAATCTCATAATTAATTTTAGGCTGAAT-TTTCTTACAATTGTT-ATTAGAACAG
255 AATGGCTTTATAATCTCAAAATTGATTTTAAGTTGAATATTT-TTACAATTTTTCATTAAAACAG
* *
754 TTTATAATTAAATGTCTACCTT
319 ATTATAATTGAATGTCTACCTT
* *
776 G-GAAAACATAAAGAAAAAAGAATTCATTGACAA-AAGAAGTCTATTTACAGTCACGCATTCCTT
1 GAG-AAACATAAAGAAAAAAGAATTCATTGACAAGAA-AAGTCCATTTACAGTCACCCATTCCTT
* * * * * *
839 -AAAGGCCTTATTACATGCTTTCAACGGCTTTATAATCTCAAAATTGATTTTAAGTTGAATATTT
64 CAAAAGCCTTATTACATACTTTAAATGGCTTTATAATCTCATAATTGATTTTAAGTCGAAT-TTT
* * *
903 TTACAGTTTTGGTTAAATCAAATTATAATTGAATGTCTACCTCGAGAAATATGAAAAAAAAGCAT
128 TTACA-TTTTGGTTAAAACAAACTATAATTGAATGTCTACCTCGAGAAACATGAAAAAAAAGCAT
* * * ** *
968 TCATTGGCAAGAAAAGTCCTTTTATAGTTACTTATTTTTTGAAAAGCCTTATTACTCACTTTAAA
192 TCATTGGCAAGAAAAGTCCATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAA
* * * * * * * *
1033 TGGTTTTATTAGC-CAAAAATTGATTTTATGTTCAATTGTTTTTAC-CTTTTTCGTT-AAACAGA
257 TGGCTTTATAATCTC-AAAATTGATTTTAAGTTGAA-TATTTTTACAATTTTTCATTAAAACAGA
1095 TTATAATTGAATGTCTACCTT
320 TTATAATTGAATGTCTACCTT
** * * * * * ** * *
1116 GAGAAATGTGAAGAAAAATGCATTTATTGATGAA-AAAAGTTAATTTATAGTCACCCATTTCTTC
1 GAGAAACATAAAGAAAAAAGAATTCATTGA-CAAGAAAAGTCCATTTACAGTCACCCATTCCTTC
* * * * * * *
1180 TAAAGCTTTATTACTTACCTCAAAT-GCTTTTATAATCTAATAATTGATTTTAAGTTGAATTTTT
65 AAAAGCCTTATTACATACTTTAAATGGC-TTTATAATCTCATAATTGATTTTAAGTCGAA-TTTT
* *
1244 TTACATTTTTGGCTT-AAACAGAA-TATAATTGAATGTCTACCTCAAGAAACCT-AAAGTAACAA
128 TTACA-TTTTGG-TTAAAACA-AACTATAATTGAATGTCTACCTCGAGAAACATGAAA--AA-AA
* * * * * * * * *
1306 ATCATTTATTAGTAAGAAATGTTCATTTATAGTCACCCATTCCTTCAAAACCCTTATTACTCGCT
187 AGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACT
* *
1371 TTAAATGG-TTTCATAATCTCAAAATTGATTTTAAGTTAAATATTTTTAC-ATTTTTTATTAAAA
252 TTAAATGGCTTT-ATAATCTCAAAATTGATTTTAAGTTGAATATTTTTACAATTTTTCATTAAAA
1434 CAGATTATAATTGAATGTCTACCTT
316 CAGATTATAATTGAATGTCTACCTT
* * * *
1459 GAGAAATATGAAA-AAAAATGCATTCATTGGCAAGAAAAGTCCATTTACAGTCACCCATTCCTTC
1 GAGAAACAT-AAAGAAAAAAGAATTCATTGACAAGAAAAGTCCATTTACAGTCACCCATTCCTTC
* * * * *
1523 AAAAGCCTTATTACACACTTTAAATGGTTTTATTATCTCAAAATTGATTTTATGTTC-AATTTTT
65 AAAAGCCTTATTACATACTTTAAATGGCTTTATAATCTCATAATTGATTTTAAG-TCGAA--TTT
* * * * * * *
1587 TTTACATTTTTGATTAAAACAGACTATGATTGAATGTCTA-CTCCAAGAAACGTGAAGAGAAAGG
127 TTTACA-TTTTGGTTAAAACAAACTATAATTGAATGTCTACCT-CGAGAAACATGAA-AAAAAAG
* * * * * * *
1651 CATTTATTGACAAGAAAAGTCTATTTATACTCACCCATTCCTTCAGAAGCCTTATTACTCGCTTT
189 CATTCATTGGCAAGAAAAGTCCATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTT
*
1716 AAATGGTTTTATAATCTCA
254 AAATGGCTTTATAATCTCA
1735 NNNNNNNNNN
Statistics
Matches: 1068, Mismatches: 186, Indels: 90
0.79 0.14 0.07
Matches are distributed among these distances:
338 1 0.00
339 45 0.04
340 362 0.34
341 281 0.26
342 42 0.04
343 280 0.26
344 54 0.05
345 2 0.00
346 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (340 bp):
GAGAAACATAAAGAAAAAAGAATTCATTGACAAGAAAAGTCCATTTACAGTCACCCATTCCTTCA
AAAGCCTTATTACATACTTTAAATGGCTTTATAATCTCATAATTGATTTTAAGTCGAATTTTTTA
CATTTTGGTTAAAACAAACTATAATTGAATGTCTACCTCGAGAAACATGAAAAAAAAGCATTCAT
TGGCAAGAAAAGTCCATTTATAGTCACCTATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGC
TTTATAATCTCAAAATTGATTTTAAGTTGAATATTTTTACAATTTTTCATTAAAACAGATTATAA
TTGAATGTCTACCTT
Found at i:4506 original size:171 final size:168
Alignment explanation
Indices: 4188--5065 Score: 529
Period size: 171 Copynumber: 5.2 Consensus size: 168
4178 NNNNNNNNNN
* * * * *
4188 TCTTACCAATGAATGCCTTTTCTTCATG-TTTCTCAAGGTAGACATTCAATTATAATTTATTTTA
1 TCTTGCCAATGAATTCTTTTTCTTCATGTTTTC-CAAGGTAGACATTCAATTATAATATGTTTTA
* * * *
4252 ACCAAAACTGTAAAAATATTTAACTTAAAATCAATTTTGAGATTATAAAGCCATTGAAAGCGTGT
65 ACCAAAAATGTAAAAA-A-TTAACTTAAAATCAATTATGAGATTATAAAACCATTGAAAGCGAGT
* * *
4317 AATAAGGCCTTTGAAGGAATGCGTAACTATAAATAGACTTTT
128 AATAACGACTTTGAAGGAATGCGTAACTACAAATAGA-TTTT
* * * * *
4359 T-TTGCCAATGAATTGGTTTTTTTTTCATGTTTTCCAAGGCAGACATTCAATTATAATCTGTTCT
1 TCTTGCCAATGAATT--CTTTTTCTTCATGTTTTCCAAGGTAGACATTCAATTATAATATGTTTT
** * * * * *
4423 AATAAAAAATATAAAAAATTAAGCCTAAAATCAATTATGGGATTATAAAACCATTTAAAGTGAGT
64 AACCAAAAATGTAAAAAATTAA-CTTAAAATCAATTATGAGATTATAAAACCATTGAAAGCGAGT
* * * * *
4488 AAT-ACGATTTTGGAAGGAATGTGTGATTACAAATGGATTTT
128 AATAACGACTTT-GAAGGAATGCGTAACTACAAATAGATTTT
* * * *
4529 TCTTGCCAATGAATTCTTTTTGTTCATGTTTCCCAAGGTTGACATTCAATT-TAGTATGTTTTAA
1 TCTTGCCAATGAATTCTTTTTCTTCATGTTTTCCAAGGTAGACATTCAATTATAATATGTTTTAA
*********** * *
4593 CCAAAAATGTAAAGAAATTCAACTTAAAATCAATTATGANNNNNNNNNNTCATTTAAAGCAAGTA
66 CCAAAAATGTAAA-AAATT-AACTTAAAATCAATTATGAGATTATAAAACCATTGAAAGCGAGTA
* * * * * * * *
4658 ATAA-GGCTTTTGAAAGAATGGGTGATTATAAATGGACTTT
129 ATAACGAC-TTTGAAGGAATGCGTAACTACAAATAGATTTT
** * * ** * *
4698 TCTTATCAATGAATGCCTTTTTCTTCACG-TTTCTTGAGGTGGACATTCAATTATAATTTGTTTT
1 TCTTGCCAATGAAT-TCTTTTTCTTCATGTTTTC-CAAGGTAGACATTCAATTATAATATGTTTT
* * * * * ** * *
4762 CACCAAAACTATAAAAACATTCAACTTAAAATCAATTTTGAGATTACAAAGTCATTTAAAACGAG
64 AACCAAAAATGTAAAAA-ATT-AACTTAAAATCAATTATGAGATTATAAAACCATTGAAAGCGAG
* * ********** *
4827 TAATAA-GGCTTTTGAAGCAATNNNNNNNNNNAAATAGACTTT
127 TAATAACGAC-TTTGAAGGAATGCGTAACTACAAATAGATTTT
* * * *
4869 TCTTGCCAATGAAGGTCTTTTTCTTCATG-TTTCTCGAGGTAGACATTCAATT-TAGTTTGTTTT
1 TCTTGCCAATGAA-TTCTTTTTCTTCATGTTTTC-CAAGGTAGACATTCAATTATAATATGTTTT
* * ** * * *
4932 ATCCAAAAGTAAG-AAAACAATTCGGCTTAAAATCAATTATGAGATTATAAAGCCATTTAAAGCA
64 AACCAAAA--ATGTAAAA-AATT-AACTTAAAATCAATTATGAGATTATAAAACCATTGAAAGCG
* * * * * ** *
4996 AGTAATAA-GGCTTTTCAAGGAATGGGTCACTATAAAGGGACTTT
125 AGTAATAACGAC-TTTGAAGGAATGCGTAACTACAAATAGATTTT
*
5040 TCTTACCAATGAATTCTTTTT-TTCAT
1 TCTTGCCAATGAATTCTTTTTCTTCAT
5066 CACGTTTCTC
Statistics
Matches: 553, Mismatches: 136, Indels: 38
0.76 0.19 0.05
Matches are distributed among these distances:
168 20 0.04
169 112 0.20
170 82 0.15
171 285 0.52
172 50 0.09
173 4 0.01
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.36
Consensus pattern (168 bp):
TCTTGCCAATGAATTCTTTTTCTTCATGTTTTCCAAGGTAGACATTCAATTATAATATGTTTTAA
CCAAAAATGTAAAAAATTAACTTAAAATCAATTATGAGATTATAAAACCATTGAAAGCGAGTAAT
AACGACTTTGAAGGAATGCGTAACTACAAATAGATTTT
Found at i:5509 original size:172 final size:172
Alignment explanation
Indices: 5115--5510 Score: 472
Period size: 172 Copynumber: 2.3 Consensus size: 172
5105 AATTCAACTA
* * * * *
5115 AAAATCAATTATGAGATTATAAAATCATGTAAAGCGAGTAATAAGTCTTTTGAAGAAATGGGTGA
1 AAAATCAATTTTGAGATAATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATGGGTGA
* *
5180 CTATAAATAGACTTTTCTTGCCAATGACTACCTTTCTCTTCATGTTTCTTGAAGTAGACATTCAA
66 CTATAAATAGACTTTTCTTGCCAATGAATACATTTCTCTTCATGTTTCTTGAAGTAGACATTCAA
5245 TTATAATCTATTTTAACCAAAAATGTAAAAAGAATTGAACAT
131 TTATAATCTATTTTAACCAAAAATGTAAAAAGAATTGAACAT
* ********** * *
5287 AAAATGAATTTTGAGATAATAAAACCATTTAAAGNNNNNNNNNNGGCTTTTGAAGGAATTGGTGA
1 AAAATCAATTTTGAGATAATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATGGGTGA
* * * * * * *
5352 TTATAAATGGACTTTTCTTGCTAATGAATGCATTTTTCTTCATGTTTCTCT-AGGTAGATATTCA
66 CTATAAATAGACTTTTCTTGCCAATGAATACATTTCTCTTCATGTTTCT-TGAAGTAGACATTCA
* * * *
5416 ATTATAGTCTGTTTTAACCAGAAATGTAAAAA-ATATTGAAGAT
130 ATTATAATCTATTTTAACCAAAAATGTAAAAAGA-ATTGAACAT
*
5459 AAAATCAATTTTGAGATAATAAAACCATTTAAAGTGAGTAATAAGGCTTTTG
1 AAAATCAATTTTGAGATAATAAAACCATTTAAAGCGAGTAATAAGGCTTTTG
Statistics
Matches: 180, Mismatches: 42, Indels: 4
0.80 0.19 0.02
Matches are distributed among these distances:
171 1 0.01
172 178 0.99
173 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.35
Consensus pattern (172 bp):
AAAATCAATTTTGAGATAATAAAACCATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATGGGTGA
CTATAAATAGACTTTTCTTGCCAATGAATACATTTCTCTTCATGTTTCTTGAAGTAGACATTCAA
TTATAATCTATTTTAACCAAAAATGTAAAAAGAATTGAACAT
Done.