Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400899.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4063.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 973

Length: 1623
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.33

Warning! 123 characters in sequence are not A, C, G, or T


Found at i:1117 original size:171 final size:160

Alignment explanation


    Indices: 928--1247  Score: 302
    Period size: 170  Copynumber: 1.9  Consensus size: 160

        918 NNNNNNNATG

                                      *       *       *     *                
        928 AGATTATAAAACCATTTAAAG-AGAGTAATAAGGTTTTTGAAGGAA-AGGAAGACTATAAATCAA
          1 AGATTATAAAACCATTTAAAGTA-AGCAATAAGGCTTTTGAAAGAATACG-AGACTATAAATCAA

                                 *                  * *  **     *       *    
        991 CTTTTCTTCCCAAATAAATGAGTTTTTCTACATGTTTCTCGAGGCCTACATTTAATTATAGTCTG
         64 CTTTTCTTCCC-AATAAATGACTTTTTCTACATGTTTCTCAACGCAGACATTCAATTATAATCTG

                   *      *                            
       1056 TTTTAACTAAAAATGTAAAAAATTCNNNNNNNNNNCAATTATA
        128 TTTTAACCAAAAATATAAAAAATTC----------CAATTATA

                       *                                     *        * **   
       1099 AGATTATAAAATCATTTAAAGTAAGCAATAAGGCTTTTGAAAGAATACGTGACTATAAGTGGACT
          1 AGATTATAAAACCATTTAAAGTAAGCAATAAGGCTTTTGAAAGAATACGAGACTATAAATCAACT

                  *          *        *              *                       
       1164 TTTCTTGCCAATAAATGTCTTTTTCTTCATGTTTCTCAACGTAGACATTCAATTATAATCTGTTT
         66 TTTCTTCCCAATAAATGACTTTTTCTACATGTTTCTCAACGCAGACATTCAATTATAATCTGTTT

                   *           
       1229 TAACCAATAATATAAAAAA
        131 TAACCAAAAATATAAAAAA

       1248 ATTGAACTTA


Statistics
Matches: 124,  Mismatches: 23, Indels: 5
        0.82            0.15        0.03

Matches are distributed among these distances:
 170   62  0.50
 171   59  0.48
 172    3  0.02

ACGTcount: A:0.38, C:0.12, G:0.12, T:0.34


Consensus pattern (160 bp):   
AGATTATAAAACCATTTAAAGTAAGCAATAAGGCTTTTGAAAGAATACGAGACTATAAATCAACT
TTTCTTCCCAATAAATGACTTTTTCTACATGTTTCTCAACGCAGACATTCAATTATAATCTGTTT
TAACCAAAAATATAAAAAATTCCAATTATA
Done.