Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018400903.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4067.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2465
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Found at i:570 original size:171 final size:171
Alignment explanation
Indices: 3--2419 Score: 2234
Period size: 171 Copynumber: 14.2 Consensus size: 171
1 TA
* *
3 AAAAAAATTCAACTT-AAAGTCAATTATGAGATTATAAAACCATTTAAAGCGATTAATAAGGCTT
1 AAAAAAATTCAACTTCAAA-TCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTT
* * *
67 TTGAAAGTATAGGTGATTATAAATGGACTTTTCTT-CCTAATGAATAT-TGTTTTCTTCATGTTT
65 TTGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCC-AATGAATATCT-TTTTCTTCATGTTT
* * * * * *
130 CACGAGGTAGATATTCAATTATTATCTGTTTCAAT-AAAAATAA
128 CTCAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
* * * * * **
173 AAAAAAATT-AACTT-AAAGTAAATTATAATATTATAAAACCATTTAAAGTGAGTCCTAAGGCTT
1 AAAAAAATTCAACTTCAAA-TCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTT
* * * **
236 TTGAAGGTATAGGTGACTATAAATGGACTTTTCTTGTCAAGGAATGGCTTTTTCTTCATGTTTCT
65 TTGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCATGTTTCT
* * * * *
301 CGATGTAGACATTCAATCATAATTTGTTTTAACAAAAAATA-
130 CAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
342 AAAAAAATTCAACTT-AAAGTCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTT
1 AAAAAAATTCAACTTCAAA-TCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTT
* * * * * * * *
406 TCGAAGGCATAGGTCACAATAACTGGAGTTTTCTTGCCAAAGAATATCTTTTCCTGCATGTTTCT
65 TTGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCATGTTTCT
*
471 CAAGGTAGACTTTCAATTATAATCTGTTTTAATAAAAAATAT
130 CAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
* * * * *
513 AAAAAAATTCAACTTCAAATCAAGTATGAGATTATAAAAATAATTAAAGCAAGTAATATGGCTTT
1 AAAAAAATTCAACTTCAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTT
* * * * * * ** *
578 CGAAGGGATGGGTGAGTATAAATAGACTTTTC-TGAGCAATGAATGGCTTTTTCTTCATATTTCT
66 TGAAGGCATAGGTGACTATAAATGGACTTTTCTTG-CCAATGAATATCTTTTTCTTCATGTTTCT
* * * * **
642 CATGGTAGACATTCAATTATAATTTTTTTTGACCAAAAAT-T
130 CAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
* * * * * *
683 AAAAAAAGAAT-AACTTGAAGTCAATTATGAGATTATAAAGCAATTTAAAGCGAGTAATAAGGGT
1 -AAAAAA-ATTCAACTTCAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCT
* ** * * *
747 TTTGAAGGTATATATGACTATAAATGGA-TTTTTTCTGCCAATGAATAACTTTTTCTTCAAGTTT
64 TTTGAAGGCATAGGTGACTATAAATGGACTTTTCT-TGCCAATGAATATCTTTTTCTTCATGTTT
* * * * * *
811 CTCGACGTAAACATTCAATTATAATATATTTTAATAGAAAATAT
128 CTCAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
** *
855 -AAAAAATT-AACCACAAATCAATTATGAGATTATAAAACCATTTAAAGCG-GATAATAAGGCTT
1 AAAAAAATTCAACTTCAAATCAATTATGAGATTATAAAACTATTTAAAGCGAG-TAATAAGGCTT
* * * *
917 TTGAACGTATAGGTGACTATAAATGGACTTTTTTTGCCAATGAATATCTTTTTCTTTATGTTTCT
65 TTGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCATGTTTCT
** * *
982 TGAGATAGACGTTCAATTATAATCT-TTTGTAATAAAAAAATAT
130 CAAGGTAGACATTCAATTATAATCTGTTT-TAAT-AAAAAATAT
* * * * * * * *
1025 TAAAAAATTCAACTTTAAATCTATTATTAGATTATAAAAATAATTAAAGCAAGTAATAAAGCTTT
1 AAAAAAATTCAACTTCAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTT
** * * * ** * **
1090 CAAAGGTAT-GGCTGAGTATAAATAGACTTTTCTCACGAATGAATGGCTTTTTCTTCATGTTTCT
66 TGAAGGCATAGG-TGACTATAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCATGTTTCT
* *
1154 CAAGGTAAACATTCAATTATAATCTGTTTTGATAAAAAATGA-
130 CAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAAT-AT
* ** * * * *
1196 AAAAAAGAAT-AAC-TCAAAGTCAATTATGAGATTAGGAAGCCATTTAAACCGAGCAATAAGGCT
1 AAAAAA-ATTCAACTTCAAA-TCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCT
* * * * *
1259 TTTGAAGGTATAGGTGACTATAAATAGACTTTTTCACT-CCAATGAATATCTTTTTGTTCACGTT
64 TTTGAAGGCATAGGTGACTATAAATGGAC-TTTTC-TTGCCAATGAATATCTTTTTCTTCATGTT
* * *
1323 T-TCTAAGGTAGACATGCAATTATAATCTGTTTGAATAAAAAATGT
127 TCTC-AAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
*
1368 AAAAATATTCAACTTCAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGTG-TT
1 AAAAAAATTCAACTTCAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAG-GCTT
* * ** ** * *
1432 TTGAAGGCAT-GAGTGAGTATAAGTGGACTTTTCTTATCAATGAATGGCTTTTTTTTTCACGTTT
65 TTGAAGGCATAG-GTGACTATAAATGGACTTTTCTTGCCAATGAATATC-TTTTTCTTCATGTTT
** * *
1496 CTCAAGGCGGACATTCAATTATAATCTATTTTAACAAAAAA-AT
128 CTCAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
*
1539 ------A-TCAACTT-AAAGTCAATTATAAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTT
1 AAAAAAATTCAACTTCAAA-TCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTT
* * * * * *
1596 TTTAAGACAAAGGTAACTATAAATAGACTTTTCTTACCAATGAATATCTTTTTCTTCATGTTT-T
65 TTGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCATGTTTCT
*
1660 CTAAGGTAGACATTCAATTATAATCTGTTTAAATAAAAAATAT
130 C-AAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
* * * * * *
1703 AAAACAATTCAACATAAAATCAAGTACGAGACTATAAAAACTA-TTAAAGC-ATGTAATAAGGCT
1 AAAAAAATTCAACTTCAAATCAATTATGAGATTAT-AAAACTATTTAAAGCGA-GTAATAAGGCT
* * * * * * * * *
1766 TTTGAAGGCAT-GAATGAGTATACATGAACTTTT-TTGAGCAAT-AAAAGACTTTTT-TTTACGT
64 TTTGAAGGCATAG-GTGACTATAAATGGACTTTTCTTG-CCAATGAATA-TCTTTTTCTTCATGT
* * * *
1827 TTCTCGAGGTAGGCATTTAATTATAATCTGTTTTAATCAAAAATGGA-
126 TTCTCAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAAT--AT
* *
1874 AAAAAAATTCAGCTT-AAAGTCAATTATGAGATTATAAAACCATTTAAAGCGAGTAATAAGG-TT
1 AAAAAAATTCAACTTCAAA-TCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTT
* * * * * * **
1937 TTAGAAGCCATAGGTGACTATAAATGGATTTTTTTTGTCAATGAATAACTTTTTCTTTACATTTC
65 TT-GAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCATGTTTC
* * * * *
2002 CCAAGGTAGTCATTCGATTATAATCTGTTTTAGTAAAAAATGT
129 TCAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
* * * *
2045 -AAAAACTTGAACTTCAAATCAATTATGAGATTCTAAAACTATTTAAAGCGAGTAATAAAGCTTT
1 AAAAAAATTCAACTTCAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTT
* * * * * * * *
2109 CGAAGGCGTAGGTGACTATAACTAGACTTTTCTTGTCAATGAATATCTTTTTCTGCACGTTTGTC
66 TGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCATGTTTCTC
* *
2174 AAAGTAAACATTCAATTATAATCTGTTTTAATAAAAAATAT
131 AAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
* * * * * * *
2215 AAAAAAATTCAACTTTAAAATTAATAATGAGAATATAAAAATAATTAAAGCAAGTAATAAGG-TT
1 AAAAAAATTCAAC-TTCAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTT
** * * * *
2279 TTCGAAGGCAT-GAACGAGTATAAATAGACTTGTT-TTGCCAATGAATAACTCTTTCTTTACAT-
65 TT-GAAGGCATAG-GTGACTATAAATGGACTT-TTCTTGCCAATGAATATCTTTTTC-TT-CATG
* * * *
2341 TTCCT-GAGGTAGACATTGAATTATAATATGTTTTAATAAAAAA-AT
125 TTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
* * *
2386 ATAAAAACTTGAACTTCAAATCAATTTTGAGATT
1 A-AAAAAATTCAACTTCAAATCAATTATGAGATT
2420 TGTTGGCTCC
Statistics
Matches: 1833, Mismatches: 338, Indels: 151
0.79 0.15 0.07
Matches are distributed among these distances:
162 2 0.00
163 50 0.03
164 87 0.05
165 2 0.00
168 4 0.00
169 258 0.14
170 383 0.21
171 541 0.30
172 486 0.27
173 18 0.01
174 2 0.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.35
Consensus pattern (171 bp):
AAAAAAATTCAACTTCAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTT
TGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTTCATGTTTCTC
AAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
Found at i:1032 original size:512 final size:507
Alignment explanation
Indices: 4--2419 Score: 2255
Period size: 512 Copynumber: 4.7 Consensus size: 507
1 TAA
* * *
4 AAAAAATTCAACTTAAAGTCAATTATGAGATTATAAAACCATTTAAAGCGATTAATAAGGCTTTT
1 AAAAAATTCAACTTAAA-TCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTC
* * * * * * *
69 GAAAGTATAGGTGATTATAAATGGACTTTTCT-TCCTAATGAATA-TTGTTTTCTTCATGTTTCA
65 GAAGGGATAGGTGACTATAAATAGACTTTTCTGACC-AATGAATAGCT-TTTTCTTCATGTTTCT
* * * * * * *
132 CGAGGTAGATATTCAATTATTA-TCTGTTTCAAT-AAAAATAAAAAAAAATTAACTTAAAGTAAA
128 CAAGGTAGACATTCAATTATAATTTTTTTTGAATAAAAAATAAAAAAAAA-TAACTTAAAGTCAA
* * * * ** *
195 TTATAATATTATAAAACCATTTAAAGTGAGTCCTAAGGCTTTTGAAGGTATAGGTGACTATAAAT
192 TTATGAGATTAT-AAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGTATA-ATGACTATAAAT
* * * ** * * *
260 GGA-CTTTTCTTGTCAAGGAATGGCTTTTTCTTCATGTTTCTCGATGTAGACATTCAATCATAAT
255 GGATTTTTTC-TGCCAATGAATAACTTTTTCTTCAAGTTTCTCGAGGTAGACATTCAATTATAAT
* * * *
324 TTGTTTTAACAAAAAATAAAAAAAATTCAACTT-AAAGTCAATTATGAGATTATAAAACTATTTA
319 ATGTTTTAATAAAAAATATAAAAAATTCAACTTCAAA-TCAATTATGAGATTATAAAACCATTTA
* * * * * *
388 AAGCGAGTAATAAGGCTTTCGAAGGCATAGGTCACAATAACTGGAGTTTTCTTGCCAAAGAATAT
383 AAGCGAGTAATAAGG-TTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATAT
* ** * * *
453 CTTTTCCTGCATGTTTCTCAAGGTAGACTTTCAATTATAATCTGTTTTAATAAAAAATATA
447 CTTTTTCTTTACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATATT
* * * * *
514 AAAAAATTCAACTTCAAATCAAGTATGAGATTATAAAAATAATTAAAGCAAGTAATATGGCTTTC
1 AAAAAATTCAACTT-AAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTC
* * * * *
579 GAAGGGATGGGTGAGTATAAATAGACTTTTCTGAGCAATGAATGGCTTTTTCTTCATATTTCTCA
65 GAAGGGATAGGTGACTATAAATAGACTTTTCTGACCAATGAATAGCTTTTTCTTCATGTTTCTCA
* ** * *
644 TGGTAGACATTCAATTATAATTTTTTTTGACCAAAAATTAAAAAAAGAATAACTTGAAGTCAATT
130 AGGTAGACATTCAATTATAATTTTTTTTGAATAAAAAATAAAAAAA-AATAACTTAAAGTCAATT
*
709 ATGAGATTATAAAGCAATTTAAAGCGAGTAATAAGGGTTTTGAAGGTATATATGACTATAAATGG
194 ATGAGATTATAAA-CAATTTAAAGCGAGTAATAAGGCTTTTGAAGGTATA-ATGACTATAAATGG
* * *
774 ATTTTTTCTGCCAATGAATAACTTTTTCTTCAAGTTTCTCGACGTAAACATTCAATTATAATATA
257 ATTTTTTCTGCCAATGAATAACTTTTTCTTCAAGTTTCTCGAGGTAGACATTCAATTATAATATG
* **
839 TTTTAATAGAAAATATAAAAAATT-AACCACAAATCAATTATGAGATTATAAAACCATTTAAAGC
322 TTTTAATAAAAAATATAAAAAATTCAACTTCAAATCAATTATGAGATTATAAAACCATTTAAAGC
* * *
903 G-GATAATAAGGCTTTTGAACGTATAGGTGACTATAAATGGACTTTTTTTGCCAATGAATATCTT
387 GAG-TAATAAGG-TTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATATCTT
* ** * *
967 TTTCTTTATGTTTCTTGAGATAGACGTTCAATTATAATCT-TTTGTAATAAAAAAATATT
450 TTTCTTTACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTT-TAAT-AAAAAATATT
* * * * * *
1026 AAAAAATTCAACTTTAAATCTATTATTAGATTATAAAAATAATTAAAGCAAGTAATAAAGCTTTC
1 AAAAAATTCAAC-TTAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTC
* * * * * *
1091 AAAGGTAT-GGCTGAGTATAAATAGACTTTTCTCACGAATGAATGGCTTTTTCTTCATGTTTCTC
65 GAAGGGATAGG-TGACTATAAATAGACTTTTCTGACCAATGAATAGCTTTTTCTTCATGTTTCTC
* * * *
1155 AAGGTAAACATTCAATTATAATCTGTTTTG-ATAAAAAATGAAAAAAAGAATAACTCAAAGTCAA
129 AAGGTAGACATTCAATTATAATTTTTTTTGAATAAAAAAT-AAAAAAA-AATAACTTAAAGTCAA
* * * * * *
1219 TTATGAGATTAGGAAGCCATTTAAACCGAGCAATAAGGCTTTTGAAGGTATAGGTGACTATAAAT
192 TTATGAGATTA-TAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGTATA-ATGACTATAAAT
* * * * * * *
1284 AGACTTTTTCACT-CCAATGAATATCTTTTTGTTCACGTTT-TCTAAGGTAGACATGCAATTATA
255 GGA-TTTTT-TCTGCCAATGAATAACTTTTTCTTCAAGTTTCTC-GAGGTAGACATTCAATTATA
* * * *
1347 ATCTGTTTGAATAAAAAATGTAAAAATATTCAACTTCAAATCAATTATGAGATTATAAAACTATT
317 ATATGTTTTAATAAAAAATATAAAAA-ATTCAACTTCAAATCAATTATGAGATTATAAAACCATT
* * **
1412 TAAAGCGAGTAATAAGTGTTTTGAAGGCAT-GAGTGAGTATAAGTGGACTTTTCTTATCAATGAA
381 TAAAGCGAGTAATAAG-GTTTTGAAGGCATAG-GTGACTATAAATGGACTTTTCTTGCCAATGAA
** * ** * *
1476 TGGCTTTTTTTTTCACGTTTCTCAAGGCGGACATTCAATTATAATCTATTTTAACAAAAAA-A-T
444 TATCTTTTTCTTT-ACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATATT
* *
1539 -----A-TCAACTTAAAGTCAATTATAAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTT
1 AAAAAATTCAACTTAAA-TCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTC
* ** * * * *
1598 TAAGACAAAGGTAACTATAAATAGACTTTTCTTACCAATGAATATCTTTTTCTTCATGTTT-TCT
65 GAAGGGATAGGTGACTATAAATAGACTTTTCTGACCAATGAATAGCTTTTTCTTCATGTTTCTC-
* * * * * * *
1662 AAGGTAGACATTCAATTATAA-TCTGTTTAAATAAAAAATATAAAACAATTCAACATAAAATCAA
129 AAGGTAGACATTCAATTATAATTTTTTTTGAATAAAAAATA-AAAAAAAAT-AACTTAAAGTCAA
* * * * * *
1726 GTACGAGACTATAAA-AACTATTAAAGC-ATGTAATAAGGCTTTTGAAGGCATGAATGAGTATAC
192 TTATGAGATTATAAACAA-T-TTAAAGCGA-GTAATAAGGCTTTTGAAGGTAT-AATGACTATAA
* * * * * * * *
1789 ATGAACTTTTT-TGAGCAAT-AAAAGACTTTTT-TTTACGTTTCTCGAGGTAGGCATTTAATTAT
253 ATGGATTTTTTCTG-CCAATGAATA-ACTTTTTCTTCAAGTTTCTCGAGGTAGACATTCAATTAT
* * * *
1851 AATCTGTTTTAATCAAAAATGGAAAAAAAATTCAGCTT-AAAGTCAATTATGAGATTATAAAACC
316 AATATGTTTTAATAAAAAAT--ATAAAAAATTCAACTTCAAA-TCAATTATGAGATTATAAAACC
* * * *
1915 ATTTAAAGCGAGTAATAAGGTTTTAGAAGCCATAGGTGACTATAAATGGATTTTTTTTGTCAATG
378 ATTTAAAGCGAGTAATAAGGTTTT-GAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATG
* * * * * * *
1980 AATAACTTTTTCTTTACATTTCCCAAGGTAGTCATTCGATTATAATCTGTTTTAGTAAAAAAT-G
442 AATATCTTTTTCTTTACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATAT
2044 T
507 T
* * * *
2045 AAAAACTTGAACTTCAAATCAATTATGAGATTCTAAAACTATTTAAAGCGAGTAATAAAGCTTTC
1 AAAAAATTCAACTT-AAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTC
* * * * * *
2110 GAAGGCG-TAGGTGACTATAACTAGACTTTTCTTG-TCAATGAATATCTTTTTCTGCACGTTTGT
65 GAAGG-GATAGGTGACTATAAATAGACTTTTC-TGACCAATGAATAGCTTTTTCTTCATGTTTCT
* * * * * * *
2173 CAAAGTAAACATTCAATTATAATCTGTTTT-AATAAAAAATATAAAAAAATTCAACTTTAAAATT
128 CAAGGTAGACATTCAATTATAATTTTTTTTGAATAAAAAATA-AAAAAAAAT-AAC-TTAAAGTC
* * * * * *
2237 AATAATGAGAATATAAA-AATAATTAAAGCAAGTAATAAGG-TTTTCGAAGGCATGAACGAGTAT
190 AATTATGAGATTATAAACAAT--TTAAAGCGAGTAATAAGGCTTTT-GAAGGTAT-AATGACTAT
* * * * *
2300 AAATAGACTTGTTT-TGCCAATGAATAACTCTTTCTTTACA-TTTC-CTGAGGTAGACATTGAAT
251 AAATGGA-TTTTTTCTGCCAATGAATAACTTTTTCTTCA-AGTTTCTC-GAGGTAGACATTCAAT
* * *
2362 TATAATATGTTTTAATAAAAAAATATAAAAACTTGAACTTCAAATCAATTTTGAGATT
313 TATAATATGTTTTAAT-AAAAAATATAAAAAATTCAACTTCAAATCAATTATGAGATT
2420 TGTTGGCTCC
Statistics
Matches: 1576, Mismatches: 261, Indels: 135
0.80 0.13 0.07
Matches are distributed among these distances:
504 1 0.00
505 91 0.06
506 126 0.08
507 187 0.12
508 4 0.00
510 123 0.08
511 145 0.09
512 522 0.33
513 182 0.12
514 57 0.04
515 104 0.07
516 31 0.02
517 3 0.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.35
Consensus pattern (507 bp):
AAAAAATTCAACTTAAATCAATTATGAGATTATAAAACTATTTAAAGCGAGTAATAAGGCTTTCG
AAGGGATAGGTGACTATAAATAGACTTTTCTGACCAATGAATAGCTTTTTCTTCATGTTTCTCAA
GGTAGACATTCAATTATAATTTTTTTTGAATAAAAAATAAAAAAAAATAACTTAAAGTCAATTAT
GAGATTATAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGGTATAATGACTATAAATGGATTT
TTTCTGCCAATGAATAACTTTTTCTTCAAGTTTCTCGAGGTAGACATTCAATTATAATATGTTTT
AATAAAAAATATAAAAAATTCAACTTCAAATCAATTATGAGATTATAAAACCATTTAAAGCGAGT
AATAAGGTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGAATATCTTTTTCTT
TACGTTTCTCAAGGTAGACATTCAATTATAATCTGTTTTAATAAAAAATATT
Done.