Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018400906.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_407.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18546
ACGTcount: A:0.22, C:0.07, G:0.08, T:0.21
Warning! 7670 characters in sequence are not A, C, G, or T
Found at i:6050 original size:175 final size:175
Alignment explanation
Indices: 5803--6137 Score: 437
Period size: 176 Copynumber: 1.9 Consensus size: 175
5793 TTAAGTTGAG
* * * *
5803 TTTTTTTATATTTTTGGCTAAACAGACTATAATTGAATGTTTACCTCGAGAAATGTAAAGACAAA
1 TTTTTTTACATTTTTGGCAAAACAGACTATAATTGAATATTTACCTCAAGAAATGTAAAGACAAA
** *
5868 AGCATTC-ATTGGCAAGAAAAGTCCATTTATAGT-TTTCTATTTATTGAAAAG-CTTTATTACTC
66 AGCATTCAATTGGCAAGAAAAGTCCATTTATAGTCACTC-ATTTATTCAAAAGTC-TTATTACTC
*
5930 ACTTTAAATGGCTTCATGATCTCAAAATTGATCTTAAGTTCAATTTC
129 ACTTTAAATGGCTTCATAATCTCAAAATTGATCTTAAGTTCAATTTC
* *
5977 TTTTTTTACATTTTTGGTCAAAACAGATTATAATTTAATATTTAGCC-CAAGAAATGTAAAGA-A
1 TTTTTTTACATTTTTGG-CAAAACAGACTATAATTGAATATTTA-CCTCAAGAAATGTAAAGACA
* *
6040 AAAGGCATTCAATTGGTAAGAAAAGTCCATTTATAGTCACTCATTTCTTCAAAAGTCTTATTACT
64 AAA-GCATTCAATTGGCAAGAAAAGTCCATTTATAGTCACTCATTTATTCAAAAGTCTTATTACT
** * * *
6105 TTCTTTAAATGGTTTTATAATCTCATAATTGAT
128 CACTTTAAATGGCTTCATAATCTCAAAATTGAT
6138 TTNNNNNNNN
Statistics
Matches: 138, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
174 20 0.14
175 42 0.30
176 73 0.53
177 3 0.02
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (175 bp):
TTTTTTTACATTTTTGGCAAAACAGACTATAATTGAATATTTACCTCAAGAAATGTAAAGACAAA
AGCATTCAATTGGCAAGAAAAGTCCATTTATAGTCACTCATTTATTCAAAAGTCTTATTACTCAC
TTTAAATGGCTTCATAATCTCAAAATTGATCTTAAGTTCAATTTC
Found at i:13231 original size:173 final size:168
Alignment explanation
Indices: 12904--13394 Score: 446
Period size: 172 Copynumber: 2.9 Consensus size: 168
12894 ATATGAGACT
* * * *
12904 ATAAATGGACATTTCTTACCAATGAATGCTTTTTCACTTACATTTCTTAAGGTAGACATTTAATT
1 ATAAAT-GACTTTTCTTACCAATGAATCCTTTTT--CTTACATTTCTCAAGGTAGACATTAAATT
* * * * *
12969 ATAGTCTGTTTTAATGAAAGATGTAAAAAAAATCAACTTCAAATCAATTACGAGATTATAAAACT
63 ATAGTCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACT
********** ** *
13034 ATTTAAAGNNNNNNNNNNGGCTTTTGAA-AAA-AATGGGTGGCA
128 ATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATAA--AAT-ACA
* *
13076 ATAAATAGACTTTTCTTCCCAATGAATACCTTTTTCTTCACATTTCTCAAGGTAGACATTAAAAT
1 ATAAAT-GACTTTTCTTACCAATGAAT-CCTTTTTCTT-ACATTTCTCAAGGTAGACATTAAATT
* * * *
13141 ATAATCTGTTTTGATCAAAAATGTTAAAAAAATTAAACTTAAAATCAATTTTGAGATTATAAAAC
63 ATAGTCTGTTTTAATCAAAAATG-TAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
* * *
13206 TTTTTAAAGTGAGTAATAAGGCTTTTGAAGAAATAAAATACT
127 TATTTAAAGCGAGTAATAAGGCTTTTGAAGAAATAAAATACA
* * * * *
13248 GTAAATGAACTTTTGTTGCCAATGAATGCTTTTTTTCTTTACGTTTCTCAAGGTAGACATTAAAT
1 ATAAATG-ACTTTTCTTACCAATGAAT-C-CTTTTTC-TTACATTTCTCAAGGTAGACATTAAAT
* * * ** * *
13313 TATAGTCTATTTTAATTAAAACTACAAAAAAATTCAAGTTAAAATCAATTATGAGAATATAAAAC
62 TATAGTCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAAC
*
13378 TATTTAGAGCGAGTAAT
127 TATTTAAAGCGAGTAAT
13395 NNNNNNNNNN
Statistics
Matches: 259, Mismatches: 52, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
171 4 0.02
172 140 0.54
173 108 0.42
174 5 0.02
175 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.35
Consensus pattern (168 bp):
ATAAATGACTTTTCTTACCAATGAATCCTTTTTCTTACATTTCTCAAGGTAGACATTAAATTATA
GTCTGTTTTAATCAAAAATGTAAAAAAATTCAACTTAAAATCAATTATGAGATTATAAAACTATT
TAAAGCGAGTAATAAGGCTTTTGAAGAAATAAAATACA
Found at i:15717 original size:170 final size:159
Alignment explanation
Indices: 15410--15721 Score: 349
Period size: 170 Copynumber: 1.9 Consensus size: 159
15400 AAATTAATTT
* * * * * *
15410 TGAGGTTATAAAACTATTTAAAGAGAGTAATAAATCTTTTAAAGGAATGGGTGACTATAAATGGT
1 TGAGATTATAAAACCATGTAAAGAGAGTAATAAAGCTTTTAAAGGAATGGGTGACTAGAAATGGA
* *
15475 CTTTCTTGCCAATGAATGCTTTGCTCTTTACATTTCTCAGGATAGACATTCAATTATAGTCTGTT
66 CTTTCTTACCAATGAATGCTTTGCTCTTCACATTTCTCAGGATAGACATTCAATTATAGTCTGTT
15540 TTAACTAAAAATGTAAAAAATTCAACTNNNNNNNNNNTA
131 TTAACTAAAAATGTAAAAAATTCAACT----------TA
* *
15579 TGAGATTATAAAACCATGTAAAGCGAGTAATAAAGCTTTTGAAGGAATGGGTGACTAGAAATGGA
1 TGAGATTATAAAACCATGTAAAGAGAGTAATAAAGCTTTTAAAGGAATGGGTGACTAGAAATGGA
* * ** **
15644 CTTTTTTTACCAATGAATGTCTTT-TTCTTCATGTTTCTCTAGG-TAGATGTTCAATTATAGTCT
66 C-TTTCTTACCAATGAATG-CTTTGCTCTTCACATTTCTC-AGGATAGACATTCAATTATAGTCT
15707 GTTTTAACTAAAAAT
128 GTTTTAACTAAAAAT
15722 ACAAAAGAAA
Statistics
Matches: 124, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
169 58 0.47
170 59 0.48
171 7 0.06
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.36
Consensus pattern (159 bp):
TGAGATTATAAAACCATGTAAAGAGAGTAATAAAGCTTTTAAAGGAATGGGTGACTAGAAATGGA
CTTTCTTACCAATGAATGCTTTGCTCTTCACATTTCTCAGGATAGACATTCAATTATAGTCTGTT
TTAACTAAAAATGTAAAAAATTCAACTTA
Found at i:17208 original size:513 final size:512
Alignment explanation
Indices: 16414--17382 Score: 1243
Period size: 513 Copynumber: 1.9 Consensus size: 512
16404 NNNNNNNNNN
* *
16414 AATCTCATAATTGATTTTAGGTTCAATTTTTTTTACATTTTTGGTTAAAACAGACCATAATTGAA
1 AATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGGTTAAAACAGACCATAATTGAA
* ** * * * * * *
16479 TGTCTACCTTGAGAAACATAAAGGAAAACACATTCATTGGTAAAAAAAGTCTATTTATAGTCACT
66 TGTCTACATCAAGAAACAGAAAGGAAAAAACATTCATGGGCAAAAAAAGTCCATTTATAGTCACC
* ** ** * *
16544 CATCCTTTTAAAAGCCTTATTACTCACTTTCGATTGTTTTATAATCTCATATTTGAATTTAAGTT
131 CATCCTTTCAAAAGCCTTATTACTCACTTTAAACAGTTTTATAATCTCATAATTGAATTTAAGCT
* * * * * *
16609 GAATTTTTTTACATTTTTGATTCAAATAGATTATAATTGAATGTCAACCTTGAGAAACATGAAGA
196 CAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATATCAA-CTTCAGAAACATGAAGA
* * * * * *
16674 AAAAGGTATTCATTGGCAAG-AAAGTCTATTTATCGTCACCCATTCCTTTAAAAGAGTTATTACT
260 AAAAGGCATTCATTAGCAAGAAAAGTCCA-TTATAGTCACCCATTCCTTCAAAAGACTTATTACT
* *
16738 CACTTTAAATAGTTTTATAACCTCAAAATTAATTTTAAGTAGAAGTTTTTTACATTTTTAATTAG
324 CACTTTAAATAGTTTTATAACCTCAAAATTAATTTTAAGTACAAGTTTTTTACATTTTTAATTAA
* * * * *
16803 AA-CAATTTATAATTGAATGTCTACCTTGAGAAACGTAAAGAACAA-GACATTCATTGGCAGGAA
389 AACCAA-TTATAATTAAATGTCTACATCGAGAAACATAAAGAA-AATGACATTCATTGGCAAGAA
16866 AAGTTCATTTATAGTCACCCATTCTTTTAAAAGCTTTATTACTCACTTTCAATGATTTTAT
452 AAGTTCATTTATAGTCACCCATTCTTTTAAAAGCTTTATTACTCACTTTCAATGATTTTAT
* * * **
16927 AATCTCAAAATTTATTTTAAGTTTAATTTTTTTTACATTTTTGGTTAAAACTGATTATAATTGAA
1 AATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGGTTAAAACAGACCATAATTGAA
* * *
16992 TGTCTACATCAAGAAACAGGAA-GAAAAAAGCATTCATGGGCAAGAAAAGTCCATTTGTAGTCAC
66 TGTCTACATCAAGAAACAGAAAGGAAAAAA-CATTCATGGGCAAAAAAAGTCCATTTATAGTCAC
* *
17056 CCATTCC-TTCAAAAGCTTTATTACTCACTTTAAACAGTTTTATAATCTCATAATT-AATTTTAG
130 CCA-TCCTTTCAAAAGCCTTATTACTCACTTTAAACAGTTTTATAATCTCATAATTGAA-TTTAA
* *
17119 GCTCAATTTGTTTTACATTTTTGGTTAAAACAGACTATAATTGAATATCTA-TGTCATGAAACAT
193 GCTCAATTT-TTTTACATTTTTGATTAAAACAGACTATAATTGAATATCAACT-TCA-GAAACAT
* * *
17183 GAAG-AAAATGCATTCATTAGCAAGAAAAGTCCATTATAGTTACCCATTCCTTCAAAAGCCTTAT
255 GAAGAAAAAGGCATTCATTAGCAAGAAAAGTCCATTATAGTCACCCATTCCTTCAAAAGACTTAT
* * * * * * **
17247 TACTCACTTTCAATGGTTTTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTACATTTTTTG
320 TACTCACTTTAAATAGTTTTATAACCTCAAAATTAATTTTAAGTACAAGTTTTTTACATTTTTAA
*
17312 TTAAAACCAATTATAATTAAATGTCTACATCGAGAAACATAAAGAAAATGGCATTCATTGGCAAG
385 TTAAAACCAATTATAATTAAATGTCTACATCGAGAAACATAAAGAAAATGACATTCATTGGCAAG
17377 AAAAGT
450 AAAAGT
17383 CCNNNNNNNN
Statistics
Matches: 386, Mismatches: 61, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
512 11 0.03
513 316 0.82
514 59 0.15
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (512 bp):
AATCTCAAAATTGATTTTAAGTTCAATTTTTTTTACATTTTTGGTTAAAACAGACCATAATTGAA
TGTCTACATCAAGAAACAGAAAGGAAAAAACATTCATGGGCAAAAAAAGTCCATTTATAGTCACC
CATCCTTTCAAAAGCCTTATTACTCACTTTAAACAGTTTTATAATCTCATAATTGAATTTAAGCT
CAATTTTTTTACATTTTTGATTAAAACAGACTATAATTGAATATCAACTTCAGAAACATGAAGAA
AAAGGCATTCATTAGCAAGAAAAGTCCATTATAGTCACCCATTCCTTCAAAAGACTTATTACTCA
CTTTAAATAGTTTTATAACCTCAAAATTAATTTTAAGTACAAGTTTTTTACATTTTTAATTAAAA
CCAATTATAATTAAATGTCTACATCGAGAAACATAAAGAAAATGACATTCATTGGCAAGAAAAGT
TCATTTATAGTCACCCATTCTTTTAAAAGCTTTATTACTCACTTTCAATGATTTTAT
Found at i:17380 original size:341 final size:338
Alignment explanation
Indices: 16414--17384 Score: 1200
Period size: 341 Copynumber: 2.8 Consensus size: 338
16404 NNNNNNNNNN
* *
16414 AATCTCATAATTGATTTTAGGTTCAATTTTTTTTACATTTTTGGTTAAAACAGACCATAATTGAA
1 AATCTCATAATTAATTTTAGG-TCAA-TTTTTTTACATTTTTGGTTAAAACAGACTATAATTGAA
* * * * *
16479 TGTCTACCTTGAGAAACATAAAGGAAAACACATTCATTGGTAAAAAAAGTCTATTTATAGTCACT
64 TGTCTA-CTTGAGAAACATAAA-GAAAA-GCATTCATTGGCAAGAAAAGTCCATTTATAGTCACC
* * * * *
16544 CA-TCCTTTTAAAAGCCTTATTACTCACTTTCGATTGTTTTATAATCTCATATTTGAATTTAAGT
126 CATTCC-TTTAAAAGCCTTATTACTCACTTTCAATGGTTTTATAATCTCAAAATTGATTTTAAGT
* * * * *
16608 TGAATTTTTTTACA-TTTTTGATTCAAA-TAGATTATAATTGAATGTCAACCTTGAGAAACATGA
190 TCAATTTTTTTACATTTTTTG-TTAAAACTA-ATTATAATTGAATGTCTACATCGAGAAACATGA
* * * *
16671 AGAAAAAGGTATTCATTGGCAAG-AAAGTCTATTTATCGTCACCCATTCCTTTAAAAGAGTTATT
253 AGAAAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGAGTTATT
*
16735 ACTCACTTTAAATAGTTTTAT
318 ACTCACTTTAAACAGTTTTAT
* * * * * ** * *
16756 AACCTCAAAATTAATTTTAAGTAGAAGTTTTTTACATTTTTAATTAGAACA-ATTTATAATTGAA
1 AATCTCATAATTAATTTTAGGT-CAATTTTTTTACATTTTTGGTTAAAACAGA-CTATAATTGAA
* * *
16820 TGTCTACCTTGAGAAACGTAAAGAACAAGACATTCATTGGCAGGAAAAGTTCATTTATAGTCACC
64 TGTCTA-CTTGAGAAACATAAAGAA-AAG-CATTCATTGGCAAGAAAAGTCCATTTATAGTCACC
* * * *
16885 CATTCTTTTAAAAGCTTTATTACTCACTTTCAATGATTTTATAATCTCAAAATTTATTTTAAGTT
126 CATTCCTTTAAAAGCCTTATTACTCACTTTCAATGGTTTTATAATCTCAAAATTGATTTTAAGTT
* * * * *
16950 TAATTTTTTTTACATTTTTGGTTAAAACTGATTATAATTGAATGTCTACATCAAGAAACAGGAAG
191 CAA-TTTTTTTACATTTTTTGTTAAAACTAATTATAATTGAATGTCTACATCGAGAAACATGAAG
* * * **
17015 AAAAAAGCATTCATGGGCAAGAAAAGTCCATTTGTAGTCACCCATTCCTTCAAAAGCTTTATTAC
255 AAAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGAGTTATTAC
17080 TCACTTTAAACAGTTTTAT
320 TCACTTTAAACAGTTTTAT
17099 AATCTCATAATTAATTTTAGGCTCAATTTGTTTTACATTTTTGGTTAAAACAGACTATAATTGAA
1 AATCTCATAATTAATTTTAGG-TCAATTT-TTTTACATTTTTGGTTAAAACAGACTATAATTGAA
* * * * *
17164 TATCTA-TGTCATGAAACATGAAGAAAATGCATTCATTAGCAAGAAAAGTCCA-TTATAGTTACC
64 TGTCTACT-TGA-GAAACATAAAGAAAA-GCATTCATTGGCAAGAAAAGTCCATTTATAGTCACC
*
17227 CATTCCTTCAAAAGCCTTATTACTCACTTTCAATGGTTTTATAATCTCAAAATTGATTTTAAGTT
126 CATTCCTTTAAAAGCCTTATTACTCACTTTCAATGGTTTTATAATCTCAAAATTGATTTTAAGTT
* * *
17292 CAATTTTTTTACATTTTTTGTTAAAACCAATTATAATTAAATGTCTACATCGAGAAACATAAAGA
191 CAATTTTTTTACATTTTTTGTTAAAACTAATTATAATTGAATGTCTACATCGAGAAACATGAAGA
*
17357 AAATGGCATTCATTGGCAAGAAAAGTCC
256 AAAAGGCATTCATTGGCAAGAAAAGTCC
17385 NNNNNNNNNN
Statistics
Matches: 534, Mismatches: 80, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
340 4 0.01
341 218 0.41
342 157 0.29
343 107 0.20
344 47 0.09
345 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (338 bp):
AATCTCATAATTAATTTTAGGTCAATTTTTTTACATTTTTGGTTAAAACAGACTATAATTGAATG
TCTACTTGAGAAACATAAAGAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTC
CTTTAAAAGCCTTATTACTCACTTTCAATGGTTTTATAATCTCAAAATTGATTTTAAGTTCAATT
TTTTTACATTTTTTGTTAAAACTAATTATAATTGAATGTCTACATCGAGAAACATGAAGAAAAAG
GCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGAGTTATTACTCACTT
TAAACAGTTTTAT
Found at i:17384 original size:170 final size:170
Alignment explanation
Indices: 16414--17384 Score: 1101
Period size: 170 Copynumber: 5.7 Consensus size: 170
16404 NNNNNNNNNN
* * **
16414 AATCTCATAATTGATTTTAGGTTCAATTTTTTTTACATTTTTGGTTAAAACAGACCATAATTGAA
1 AATCTCAAAATTGATTTTAAGTTCAA-TTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAA
* ** * * * *
16479 TGTCTACCTTGAGAAACATAAAGGAAAACACATTCATTGGTAAAAAAAGTCTATTTATAGTCACT
65 TGTCTACCTCGAGAAACATAAA-GAAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACC
* *
16544 CA-TCCTTTTAAAAGCCTTATTACTCACTTTCGATTGTTTTAT
129 CATTCC-TTTAAAAGCCTTATTACTCACTTTCAATAGTTTTAT
* * * * * * *
16586 AATCTCATATTTGAATTTAAGTTGAATTTTTTTACATTTTTGATTCAAATAGATTATAATTGAAT
1 AATCTCAAAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAAT
* * * * * *
16651 GTCAACCTTGAGAAACATGAAGAAAAAGGTATTCATTGGCAAG-AAAGTCTATTTATCGTCACCC
66 GTCTACCTCGAGAAACATAAAG-AAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCC
** *
16715 ATTCCTTTAAAAGAGTTATTACTCACTTTAAATAGTTTTAT
130 ATTCCTTTAAAAGCCTTATTACTCACTTTCAATAGTTTTAT
* * ** * ** *
16756 AACCTCAAAATTAATTTTAAGTAGAAGTTTTTTACATTTTTAATTAGAACA-ATTTATAATTGAA
1 AATCTCAAAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAGA-TTATAATTGAA
* * * * *
16820 TGTCTACCTTGAGAAACGTAAAGAACAAGACATTCATTGGCAGGAAAAGTTCATTTATAGTCACC
65 TGTCTACCTCGAGAAACATAAAGAA-AAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACC
* *
16885 CATTCTTTTAAAAGCTTTATTACTCACTTTCAAT-GATTTTAT
129 CATTCCTTTAAAAGCCTTATTACTCACTTTCAATAG-TTTTAT
* * *
16927 AATCTCAAAATTTATTTTAAGTTTAATTTTTTTTACATTTTTGGTTAAAACTGATTATAATTGAA
1 AATCTCAAAATTGATTTTAAGTTCAA-TTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAA
* * ** * * *
16992 TGTCTACATCAAGAAACAGGAAGAAAAAAGCATTCATGGGCAAGAAAAGTCCATTTGTAGTCACC
65 TGTCTACCTCGAGAAACATAAAG-AAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACC
* * * *
17057 CATTCCTTCAAAAGCTTTATTACTCACTTTAAACAGTTTTAT
129 CATTCCTTTAAAAGCCTTATTACTCACTTTCAATAGTTTTAT
* * * * *
17099 AATCTCATAATTAATTTTAGGCTCAATTTGTTTTACATTTTTGGTTAAAACAGACTATAATTGAA
1 AATCTCAAAATTGATTTTAAGTTCAATTT-TTTTACATTTTTGGTTAAAACAGATTATAATTGAA
* ** * * * *
17164 TATCTATGTC-ATGAAACATGAAGAAAATGCATTCATTAGCAAGAAAAGTCCA-TTATAGTTACC
65 TGTCTACCTCGA-GAAACATAAAGAAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACC
* *
17227 CATTCCTTCAAAAGCCTTATTACTCACTTTCAATGGTTTTAT
129 CATTCCTTTAAAAGCCTTATTACTCACTTTCAATAGTTTTAT
* *
17269 AATCTCAAAATTGATTTTAAGTTCAATTTTTTTACATTTTTTGTTAAAACCA-ATTATAATTAAA
1 AATCTCAAAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAA-CAGATTATAATTGAA
*
17333 TGTCTACATCGAGAAACATAAAGAAAATGGCATTCATTGGCAAGAAAAGTCC
65 TGTCTACCTCGAGAAACATAAAGAAAA-GGCATTCATTGGCAAGAAAAGTCC
17385 NNNNNNNNNN
Statistics
Matches: 679, Mismatches: 105, Indels: 32
0.83 0.13 0.04
Matches are distributed among these distances:
169 53 0.08
170 236 0.35
171 176 0.26
172 210 0.31
173 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (170 bp):
AATCTCAAAATTGATTTTAAGTTCAATTTTTTTACATTTTTGGTTAAAACAGATTATAATTGAAT
GTCTACCTCGAGAAACATAAAGAAAAGGCATTCATTGGCAAGAAAAGTCCATTTATAGTCACCCA
TTCCTTTAAAAGCCTTATTACTCACTTTCAATAGTTTTAT
Done.