Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018400908.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4071.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3023
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.35
Warning! 197 characters in sequence are not A, C, G, or T
Found at i:881 original size:165 final size:152
Alignment explanation
Indices: 660--969 Score: 324
Period size: 165 Copynumber: 1.9 Consensus size: 152
650 NNNCTTTTGA
* *
660 AGGAATGGGTGACTATAAATGGATTTTTTTCTCAATGAATGATTTTTTTTACACATTTCTGAAGG
1 AGGAATGGGTGACTATAAATGGATTTTTTTCTCAATGAATGATTTTTCTTACACATTTCTCAAGG
* * *
725 CAAGTATTCAATTCTAGT-TTGTTCTAA-CA-A-A-AAAAAAATTCAACTTAAAATCAATTATGG
66 CAAGCATTCAATTATAGTCTT-TT-TAACCATAGACAAAAAAATTCAACTTAAAATAAATTATGG
785 GATTATAAAACAATTTAAAGTGAG
129 GATTATAAAACAATTTAAAGTGAG
*
809 NNNNNNNNNNNNNNNAGGAATGGGTGACTATAAATGGACTTTTTTTCTCAATGAATGGTTTTTCT
1 ---------------AGGAATGGGTGACTATAAATGGA-TTTTTTTCTCAATGAATGATTTTTCT
* *
874 TACACATTTCTCAAGGCAAGCATTCGATTATAGTCTTTTTAACCATAGATGCAAAAAAATTTAAC
50 TACACATTTCTCAAGGCAAGCATTCAATTATAGTCTTTTTAACCATAGA--CAAAAAAATTCAAC
*
939 TTAAAATAAATTTTGGGATTATAAAACAATT
113 TTAAAATAAATTATGGGATTATAAAACAATT
970 NNNNNNNNNN
Statistics
Matches: 129, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
164 26 0.20
165 58 0.45
166 3 0.02
167 1 0.01
170 41 0.32
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.35
Consensus pattern (152 bp):
AGGAATGGGTGACTATAAATGGATTTTTTTCTCAATGAATGATTTTTCTTACACATTTCTCAAGG
CAAGCATTCAATTATAGTCTTTTTAACCATAGACAAAAAAATTCAACTTAAAATAAATTATGGGA
TTATAAAACAATTTAAAGTGAG
Found at i:1580 original size:170 final size:170
Alignment explanation
Indices: 824--1965 Score: 657
Period size: 170 Copynumber: 6.7 Consensus size: 170
814 NNNNNNNNNN
* * * * * ** *
824 AGGAATGGGTGACTATAAATGGACTTTTTTTCTCAATGAAT-GGTTTTTCTTACACATTTCTCAA
1 AGGAATGGGTGACTATAAATAGACTTTTCTTCCCAATGAATAGCTTTTT-TTTCATGTTTCTTAA
* * * * * * * *
888 GGCAAGCATTCGATTATAGTCT-TTTTAACCATAGATGCAAAAAAATTTAACTTAAAATAAATTT
65 AGTAAACATTCAATTATAGTCTGTTTTAACCA-AAATGTAAAAAAATTCAACTTAAAATCAATTT
* ********** * *
952 TGGGATTATAAAACAATTNNNNNNNNNNAACAAAGCTTTTAA
129 TGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAA
* ** * * *
994 AGGAATGGGTGACTATAAATGGACTTTTCTTCTTAATAAAT-G-TCTTTGTTTCATGTTTCTCAA
1 AGGAATGGGTGACTATAAATAGACTTTTCTTCCCAATGAATAGCT-TTTTTTTCATGTTTCTTAA
* * * * * * * *
1057 GGT-AACATTTAATTATTGTCTATTTTAACTTAAAATGTACAAATAATTTAACTTTAAATCAATT
65 AGTAAACATTCAATTATAGTCTGTTTTAAC-CAAAATGTA-AAAAAATTCAACTTAAAATCAATT
* ** *
1121 ATGAGATTATAAAACAATTTAAAGTTAGTAATAAGG-TTGTTGA
128 TTGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTT-TTAA
* * * * * * * * *
1164 AGAAATGAGTGATTATAAATGGACTTTTTTTCTCAATGAGTAG-TTTTTTTTGCACGTTTCTCAA
1 AGGAATGGGTGACTATAAATAGACTTTTCTTCCCAATGAATAGCTTTTTTTT-CATGTTTCTTAA
* ********** ** *
1228 GGNNNNNNNNNNATTATAGTCTGTTTTAATAAAAAATGT-ACAAAATCTCAACTTAAAAAT-AAT
65 AGTAAACATTCAATTATAGTCTGTTTTAA-CCAAAATGTAAAAAAAT-TCAACTT-AAAATCAAT
* * ** * * *
1291 TATGAGATTATAAAATAATTTAAAATGAGTCACAAGG-TTTTTA
127 TTTGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAA
** * * * * ** **
1334 AGGAATTAGTGACTATAAATGGACTTTTTTTCTCAATGAGT-GAATTTTTTT-ATGTGTT-TCCG
1 AGGAATGGGTGACTATAAATAGACTTTTCTTCCCAATGAATAGCTTTTTTTTCATGT-TTCT-TA
* * * *
1396 AGGGAAGGCATTCAATTATAGTCTGTTTTAACCATAAATGTAAAAAAATTCAACTAAAAATCAAT
64 AAGTAA-ACATTCAATTATAGTCTGTTTTAACCA-AAATGTAAAAAAATTCAACTTAAAATCAAT
**********
1461 TTTG-GATTATAAAACAATTTAAAGCGAGNNNNNNNNNNTTTAA
127 TTTGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAA
*
1504 AGGAATGGGTGACTATAAA-AGGACTTTTCTTCCCAATAAATAGCTTTTTTTTCATGTTTCTTAA
1 AGGAATGGGTGACTATAAATA-GACTTTTCTTCCCAATGAATAGCTTTTTTTTCATGTTTCTTAA
* ********** * *
1568 AGTAAACATTCAATTATTGTCTGTTTTAACCNNNNNNNNNNAAAATTTAACTTAAAATCAATTAT
65 AGTAAACATTCAATTATAGTCTGTTTTAACCAAAATGTAAAAAAATTCAACTTAAAATCAATTTT
* * * *
1633 GAGATTAAAAAATAATTCAAAGCGAGTAATAAGGCTTTTGA
130 GAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAA
* * * * * *
1674 AGGAATGGGTGGCTATAAATAGACCTTTCTTCTCAATGAATAGC-TTTTTTCCATGTTTCTCAAG
1 AGGAATGGGTGACTATAAATAGACTTTTCTTCCCAATGAATAGCTTTTTTTTCATGTTTCTTAAA
* *** * * *
1738 GCAGGTATTCAATTATAGTTTGTTTTAATCAAAATTTAAAAAGAAATT-AACTTAAAATCAATTT
66 GTAAACATTCAATTATAGTCTGTTTTAACCAAAATGT-AAAA-AAATTCAACTTAAAATCAATTT
* * * * *
1802 TGAGATTCTAAAACAATTTAGAGCAAGTACTGAGGCTTTTAA
129 TGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAA
* ** * *
1844 AGGAATGAGTGACTATAAATAGACTTTTCTTGGCAATGAATA-ATTTGTTTTTCACGTTTCTTCA
1 AGGAATGGGTGACTATAAATAGACTTTTCTTCCCAATGAATAGCTTT-TTTTTCATGTTTCTT-A
* * * *
1908 TA-TAAACATTCGATTATAGTCTGTTTTAGCAAAAAATGTAAAAAAATTCAACTTAAAA
64 AAGTAAACATTCAATTATAGTCTGTTTTAAC-CAAAATGTAAAAAAATTCAACTTAAAA
1966 NNNNNNNNNN
Statistics
Matches: 744, Mismatches: 196, Indels: 63
0.74 0.20 0.06
Matches are distributed among these distances:
168 18 0.02
169 125 0.17
170 434 0.58
171 129 0.17
172 38 0.05
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.36
Consensus pattern (170 bp):
AGGAATGGGTGACTATAAATAGACTTTTCTTCCCAATGAATAGCTTTTTTTTCATGTTTCTTAAA
GTAAACATTCAATTATAGTCTGTTTTAACCAAAATGTAAAAAAATTCAACTTAAAATCAATTTTG
AGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTAA
Found at i:1592 original size:340 final size:341
Alignment explanation
Indices: 980--1965 Score: 771
Period size: 340 Copynumber: 2.9 Consensus size: 341
970 NNNNNNNNNN
* * * * * * * **
980 AACAAAGCTTTTAAAGGAATGGGTGACTATAAATGGACTTTTCTTCTTAATAAATGTCTTTGTTT
1 AACAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACCTTTCTTCTCAATGAATAACTTT-TTT
* * * * * * *
1045 -CATGTTTCTCAAGGTAA--CATTTAATTATTGTCTATTTTAACTTAAAATGTACAAATAATTTA
65 ACATGTTTCTCAAGG-AAGGCATTCAATTATAGTCTGTTTTAAC-CAAAATGTAAAAAGAAATTA
** * ** * * * *
1107 ACTTTAAATCAATTATGAGATTATAAAACAATTTAAAGTTAGTAATAAGG-TTGTTGAAGAAATG
128 ACTAAAAATCAATTTTGAGATTATAAAACAATTTAAAGCAAGTACTGAGGCTT-TTAAAGGAATG
* * * * * * * *****
1171 AGTGATTATAAATGGACTTTTTTTCTCAATGAGTAGTTT-TTTTTGCACGTTTC-TCAAGGNNNN
192 AGTGACTATAAATAGACTTTTCTTCCCAATAAATAATTTGTTTTT-CACGTTTCTTCAA-ATAAA
****** * *
1234 NNNNNNATTATAGTCTGTTTTAATAAAAAATGTACAAAATCTCAACTTAAAAAT-AATTATGAGA
255 CATTCAATTATAGTCTGTTTTAACAAAAAATGTAAAAAAT-TCAACTTAAAAATCAATTATGAGA
* * *
1298 TTATAAAATAATTTAAAATGAGT
319 TTAAAAAATAATTCAAAACGAGT
* * * * * * * *
1321 CACAAGG-TTTTTAAGGAATTAGTGACTATAAATGGACTTTTTTTCTCAATGAGTGAATTTTTTT
1 AACAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACCTTTCTTCTCAATGAAT-AACTTTTTT
** *
1385 ATGTGTTTC-CGAGGGAAGGCATTCAATTATAGTCTGTTTTAACCATAAATGT-AAAA-AAATTC
65 ACATGTTTCTC-AAGGAAGGCATTCAATTATAGTCTGTTTTAACCA-AAATGTAAAAAGAAATT-
* **********
1447 AACTAAAAATCAATTTTG-GATTATAAAACAATTTAAAGCGAGNNNNNNNNNNTTTAAAGGAATG
127 AACTAAAAATCAATTTTGAGATTATAAAACAATTTAAAGCAAGTACTGAGGCTTTTAAAGGAATG
* * *
1511 GGTGACTATAAA-AGGACTTTTCTTCCCAATAAATAGCTTT-TTTTTCATGTTTCTT-AAAGTAA
192 AGTGACTATAAATA-GACTTTTCTTCCCAATAAATA-ATTTGTTTTTCACGTTTCTTCAAA-TAA
* *********** *
1573 ACATTCAATTATTGTCTGTTTTAACCNNNNNNNNNNAAAATTTAACTT-AAAATCAATTATGAGA
254 ACATTCAATTATAGTCTGTTTTAACAAAAAATGTAAAAAATTCAACTTAAAAATCAATTATGAGA
*
1637 TTAAAAAATAATTCAAAGCGAGT
319 TTAAAAAATAATTCAAAACGAGT
* * * * *
1660 AATAAGGCTTTTGAAGGAATGGGTGGCTATAAATAGACCTTTCTTCTCAATGAATAGCTTTTTTC
1 AACAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACCTTTCTTCTCAATGAATAACTTTTTTA
* * * * *
1725 CATGTTTCTCAAGGCAGGTATTCAATTATAGTTTGTTTTAATCAAAATTTAAAAAGAAATTAACT
66 CATGTTTCTCAAGGAAGGCATTCAATTATAGTCTGTTTTAACCAAAATGTAAAAAGAAATTAACT
* * *
1790 TAAAATCAATTTTGAGATTCTAAAACAATTTAGAGCAAGTACTGAGGCTTTTAAAGGAATGAGTG
131 AAAAATCAATTTTGAGATTATAAAACAATTTAAAGCAAGTACTGAGGCTTTTAAAGGAATGAGTG
** * * *
1855 ACTATAAATAGACTTTTCTTGGCAATGAATAATTTGTTTTTCACGTTTCTTCATATAAACATTCG
196 ACTATAAATAGACTTTTCTTCCCAATAAATAATTTGTTTTTCACGTTTCTTCAAATAAACATTCA
*
1920 ATTATAGTCTGTTTTAGCAAAAAATGTAAAAAAATTCAACTTAAAA
261 ATTATAGTCTGTTTTAACAAAAAATGT-AAAAAATTCAACTTAAAA
1966 NNNNNNNNNN
Statistics
Matches: 490, Mismatches: 132, Indels: 45
0.73 0.20 0.07
Matches are distributed among these distances:
338 10 0.02
339 106 0.22
340 284 0.58
341 60 0.12
342 30 0.06
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.37
Consensus pattern (341 bp):
AACAAGGCTTTTGAAGGAATGAGTGACTATAAATAGACCTTTCTTCTCAATGAATAACTTTTTTA
CATGTTTCTCAAGGAAGGCATTCAATTATAGTCTGTTTTAACCAAAATGTAAAAAGAAATTAACT
AAAAATCAATTTTGAGATTATAAAACAATTTAAAGCAAGTACTGAGGCTTTTAAAGGAATGAGTG
ACTATAAATAGACTTTTCTTCCCAATAAATAATTTGTTTTTCACGTTTCTTCAAATAAACATTCA
ATTATAGTCTGTTTTAACAAAAAATGTAAAAAATTCAACTTAAAAATCAATTATGAGATTAAAAA
ATAATTCAAAACGAGT
Found at i:2285 original size:171 final size:169
Alignment explanation
Indices: 2098--3019 Score: 722
Period size: 171 Copynumber: 5.5 Consensus size: 169
2088 NNNNNNNNNC
* * * *
2098 TCAATTATGAGATTATAAAATAATTTAAAGCAAGTAATAAGGCTTTTCAATGAATGGGTGACCAT
1 TCAATTATGAGATTATAAAATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTAT
* * * ** *
2163 AAATAGATTTTTCTTCTCAATCAATAGCCTTTTTTGCATGTTTTTCAAGGTAGGCATTCGA-TTA
66 AAATGGATTTTT-TTCTCAATGAATAGCCTTTTTTACACATTTTTCAAGGCAGGCATTC-ACTTA
2227 TAGTCTGTTTTAATAAAAAATATGAAAAAATTCAACTTAAAA
129 TAGTCTGTTTTAATAAAAAA-ATGAAAAAATTCAACTTAAAA
* ********** *
2269 TCAATTATAAGATTATAAAATAATTNNNNNNNNNNAATAAGGCTTTTGAAGGAATAGGTGACTAT
1 TCAATTATGAGATTATAAAATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTAT
* * * * *
2334 AAATGGACTTTTTTTCTCAATGAGTAG-CTTTTTGTGCA-TTTTTCTCAAGGCATGCATTCAATT
66 AAATGGA-TTTTTTTCTCAATGAATAGCCTTTTT-TACACATTTT-TCAAGGCAGGCATTCACTT
* *
2397 ATAATCTG-TTT--TAACAAAA--AAAAAATTCAACTTAAAA
128 ATAGTCTGTTTTAATAAAAAAATGAAAAAATTCAACTTAAAA
* * *
2434 TCAATTATGGGATTATAAAA-AATTTAAAGCGAGTAATAAGGCTTTTGAAGCAATGGGAGACTAT
1 TCAATTATGAGATTATAAAATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTAT
* * * ** * *
2498 AAATGGATTTTTTTTCTCAATGAATAGCTTTTTTTACACATTTCTCTAGGCATACAATCAGTTAT
66 AAATGGA-TTTTTTTCTCAATGAATAGCCTTTTTTACACATTTTTCAAGGCAGGCATTCACTTAT
* * * **
2563 AGTCTGTTGTAATAAAAAATATAAAAAAATTTATTTTAAAA
130 AGTCTGTTTTAATAAAAAA-ATGAAAAAATTCAACTTAAAA
********** *
2604 TCAATTATGAGATTATAAAATAATTTNNNNNNNNNNATAAGGCTTTTGAAGGAATAGGTGACTAT
1 TCAATTATGAGATTATAAAATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTAT
** * *
2669 AAATGGATTTTCTTTCTCAATGAAT-GATTTTTTTTACACATTTTTGAAGGCAGGCATTCACTTC
66 AAATGGATTTT-TTTCTCAATGAATAG-CCTTTTTTACACATTTTTCAAGGCAGGCATTCACTTA
* * *
2733 TAGACTGTTTTAA-CAAAAAATGAAAAACAAATCAACTTAAAA
129 TAGTCTGTTTTAATAAAAAAATG-AAAA-AATTCAACTTAAAA
* * * * * * * *
2775 TCAATTAAGAAATTATAAAACAATTTAAAGTGCGTAATAAAGCTTTTGAAAGAGTGGGTGACTAT
1 TCAATTATGAGATTATAAAATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTAT
* * * * * * * **********
2840 AAATGAACTTTTTTCCTCAATCAATTG-TTTTTTTACACATTTCTCGAGGCNNNNNNNNNNTTAT
66 AAATGGA-TTTTTTTCTCAATGAATAGCCTTTTTTACACATTTTTCAAGGCAGGCATTCACTTAT
** * *
2904 AGTCT-TTTTAA-CCATAAATGCAAAAAAATTCAGCTTAAAA
130 AGTCTGTTTTAATAAAAAAATG--AAAAAATTCAACTTAAAA
* * * * * *
2944 TAAATTTTGAGATTATAAAACAATTT-AAGTGAGTAACAAGGCTTTTAAAGGAATGGGTGACTAT
1 TCAATTATGAGATTATAAAATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTAT
*
3008 AAATGGACTTTT
66 AAATGGATTTTT
3020 CTTA
Statistics
Matches: 595, Mismatches: 136, Indels: 44
0.77 0.18 0.06
Matches are distributed among these distances:
164 81 0.14
165 46 0.08
167 11 0.02
168 45 0.08
169 49 0.08
170 94 0.16
171 259 0.44
172 10 0.02
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.35
Consensus pattern (169 bp):
TCAATTATGAGATTATAAAATAATTTAAAGCGAGTAATAAGGCTTTTGAAGGAATGGGTGACTAT
AAATGGATTTTTTTCTCAATGAATAGCCTTTTTTACACATTTTTCAAGGCAGGCATTCACTTATA
GTCTGTTTTAATAAAAAAATGAAAAAATTCAACTTAAAA
Found at i:2689 original size:335 final size:329
Alignment explanation
Indices: 2098--2889 Score: 821
Period size: 335 Copynumber: 2.3 Consensus size: 329
2088 NNNNNNNNNC
* * * *
2098 TCAATTATGAGATTATAAAATAATTTAAAGCAAGTAATAAGGCTTTTCAATGAATGGGTGACCAT
1 TCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAA-GAATGGGTGACTAT
* * * * ** * * * *
2163 AAATAGATTTTTCTTCTCAATCAATAGCCTTTTTTGCATGTTTTTCAAGGTAGGCATTCGATTAT
65 AAATGGATTTTTTTTCTCAATCAATAGCTTTTTTTACACATTTCTCAAGGCAGACAATCGATTAT
* *
2228 AGTCTGTTTTAATAAAAAATATGAAAAAATTCAACTTAAAATCAATTATAAGATTATAAAATAAT
130 AGTCTGTTGTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATAAGATTATAAAATAAT
* *
2293 TNNNNNNNNNNAATAAGGCTTTTGAAGGAATAGGTGACTATAAATGGACTTTTTTTCTCAATGAG
195 T---------TAATAAGGCTTTTGAAGGAATAGGTGACTATAAATGGACTTTTTTTCTCAATGAA
* * *
2358 T-AGCTTTTTGTGCA-TTTTTCTCAAGGCATGCATTCAATTATA-ATCTGTTTTAAC-AAA-AAA
251 TGA-CTTTTTGTACACATTTT-TCAAGGCAGGCATTCAATTATAGA-CTGTTTTAACAAAAGAAA
*
2418 AA-AATTCAACTTAAAA
313 AACAAATCAACTTAAAA
* *
2434 TCAATTATGGGATTATAAAA-AATTTAAAGCGAGTAATAAGGCTTTTGAAGCAATGGGAGACTAT
1 TCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAG-AATGGGTGACTAT
* * *
2498 AAATGGATTTTTTTTCTCAATGAATAGCTTTTTTTACACATTTCTCTAGGCATACAATC-AGTTA
65 AAATGGATTTTTTTTCTCAATCAATAGCTTTTTTTACACATTTCTCAAGGCAGACAATCGA-TTA
* ** *
2562 TAGTCTGTTGTAATAAAAAATATAAAAAAATTTATTTTAAAATCAATTATGAGATTATAAAATAA
129 TAGTCTGTTGTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATAAGATTATAAAATAA
*
2627 TTTNNNNNNNNNNATAAGGCTTTTGAAGGAATAGGTGACTATAAATGGA-TTTTCTTTCTCAATG
194 TTT---------AATAAGGCTTTTGAAGGAATAGGTGACTATAAATGGACTTTT-TTTCTCAATG
* * * * *
2691 AATGATTTTTTTTACACATTTTTGAAGGCAGGCATTCACTTCTAGACTGTTTTAACAAAAAATGA
249 AATGACTTTTTGTACACATTTTTCAAGGCAGGCATTCAATTATAGACTGTTTTAAC--AAAA-GA
2756 AAAACAAATCAACTTAAAA
311 AAAACAAATCAACTTAAAA
* * * * * *
2775 TCAATTAAGAAATTATAAAACAATTTAAAGTGCGTAATAAAGCTTTTGAAAGAGTGGGTGACTAT
1 TCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTG-AAGAATGGGTGACTAT
* * * * *
2840 AAATGAACTTTTTTCCTCAATCAATTG-TTTTTTTACACATTTCTCGAGGC
65 AAATGGATTTTTTTTCTCAATCAATAGCTTTTTTTACACATTTCTCAAGGC
2890 NNNNNNNNNN
Statistics
Matches: 383, Mismatches: 50, Indels: 41
0.81 0.11 0.09
Matches are distributed among these distances:
334 6 0.02
335 232 0.61
336 25 0.07
338 3 0.01
340 5 0.01
341 52 0.14
342 57 0.15
343 3 0.01
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.36
Consensus pattern (329 bp):
TCAATTATGAGATTATAAAACAATTTAAAGCGAGTAATAAGGCTTTTGAAGAATGGGTGACTATA
AATGGATTTTTTTTCTCAATCAATAGCTTTTTTTACACATTTCTCAAGGCAGACAATCGATTATA
GTCTGTTGTAATAAAAAATATAAAAAAATTCAACTTAAAATCAATTATAAGATTATAAAATAATT
TAATAAGGCTTTTGAAGGAATAGGTGACTATAAATGGACTTTTTTTCTCAATGAATGACTTTTTG
TACACATTTTTCAAGGCAGGCATTCAATTATAGACTGTTTTAACAAAAGAAAAACAAATCAACTT
AAAA
Done.