Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400912.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4075.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2166
ACGTcount: A:0.24, C:0.09, G:0.08, T:0.25

Warning! 734 characters in sequence are not A, C, G, or T


Found at i:1871 original size:172 final size:171

Alignment explanation


    Indices: 1496--1875  Score: 458
    Period size: 172  Copynumber: 2.2  Consensus size: 171

       1486 NNNNNNNNNN

                                                         *         *         
       1496 ACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGTTATTTTTTATATTTTTAGT
          1 ACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGATATTTTTTACATTTTTAGT

                    *        *   *                   *                       
       1561 TAAAACATGCAATAATTGAATGTCTACCTCAGGAAACGTGAGGAAACAAGCATTCATTGACAACA
         66 TAAAACATACAATAATTAAATATCTACCTCAGGAAACGTGAAGAAACAAGCATTCATTGACAACA

                      *        **            **      
       1626 AAAGTCCATTTAAAGTCACTTATTCCTTCAAAAGGCTTATT
        131 AAAGTCCATTCAAAGTCACCAATTCCTTCAAAACACTTATT

                            **********                                       
       1667 ACTCGCTTTAAATAGTNNNNNNNNNNCATAATTGATTTTAAGTTGA-ATTTTTTTACATTTTTTA
          1 ACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGATA-TTTTTTACA-TTTTTA

            *      *    *                   *                     *          
       1731 TTTAAAAGATACTATAATTAAATATCTACCT-TGAGAAACGTGAAGAAACAAGCTTTCATTGACA
         64 GTTAAAACATACAATAATTAAATATCTACCTCAG-GAAACGTGAAGAAACAAGCATTCATTGACA

             *             **                           
       1795 AGAAAAGTCCATTCAGTGTCACCAATTCCTTCAAAACACTTATT
        128 ACAAAAGTCCATTCAAAGTCACCAATTCCTTCAAAACACTTATT

                                                 
       1839 ACTCGCTTTAAATAGTTTTATAATCTCATAATTGATT
          1 ACTCGCTTTAAATAGTTTTATAATCTCATAATTGATT

       1876 NNNNNNNNNN


Statistics
Matches: 167,  Mismatches: 39, Indels: 5
        0.79            0.18        0.02

Matches are distributed among these distances:
 170    1  0.01
 171   44  0.26
 172  122  0.73

ACGTcount: A:0.35, C:0.14, G:0.11, T:0.37


Consensus pattern (171 bp):   
ACTCGCTTTAAATAGTTTTATAATCTCATAATTGATTTTAAGTTGATATTTTTTACATTTTTAGT
TAAAACATACAATAATTAAATATCTACCTCAGGAAACGTGAAGAAACAAGCATTCATTGACAACA
AAAGTCCATTCAAAGTCACCAATTCCTTCAAAACACTTATT
Done.