Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397620.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_348.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4182
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.32

Warning! 634 characters in sequence are not A, C, G, or T


Found at i:959 original size:11 final size:12

Alignment explanation


    Indices: 943--971  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        933 AAAATTTCAA

                        
        943 TGGAAA-TCCGT
          1 TGGAAATTCCGT

                        
        954 TGGAAATTCCGT
          1 TGGAAATTCCGT

                  
        966 TGGAAA
          1 TGGAAA

        972 ATTTGGTGGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  11    6  0.35
  12   11  0.65

ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28


Consensus pattern (12 bp):   
TGGAAATTCCGT
Done.