Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400937.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4099.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1713
ACGTcount: A:0.24, C:0.10, G:0.09, T:0.29

Warning! 492 characters in sequence are not A, C, G, or T


Found at i:1609 original size:170 final size:171

Alignment explanation


    Indices: 1334--1696  Score: 428
    Period size: 170  Copynumber: 2.1  Consensus size: 171

       1324 TTTTTTTCTC

                            *   *          *                 *   *   *      *
       1334 AAAACAGACTATAATTTAATTCCTTCCTTGGCAAACATGTAGAAAAAGCTATTCATTTGGAAGAT
          1 AAAACAGACTATAATTGAATGCCTTCCTTGGAAAACATGTAGAAAAAGCCATTAATTAGGAAGAA

                             **             **                         * *   
       1399 AAGTCTATCTATAGTCTTTCATTCCTTCAAAATTCTTATTACTCACTTTAAATGGTTTTGTTA-T
         66 AAGTCTATCTATAGTCTCCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATT

                            *   *                   * 
       1463 GTCAAAATTGATTTTATGTTCAATTTTTTTT-ATTTTTAGTT
        131 GT-AAAATTGATTTTAAGTTAAATTTTTTTTAATTTTTAGCT

                    *                                                        
       1504 AAAACAGATTATAATTGAATGCCTGT-CTTGGAAAACATGTAGAAAAAGCCATTAATTAGGAAGA
          1 AAAACAGACTATAATTGAATGCCT-TCCTTGGAAAACATGTAGAAAAAGCCATTAATTAGGAAGA

                      *   *          *    *               *                  
       1568 AAAGT-TCATTTATGGTCTCCCATTTCTTCGAAAGCCTTATTACTCGCTTTAAATGGTTTTATAA
         65 AAAGTCT-ATCTATAGTCTCCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAA

                 *                                  *   
       1632 TTGTATAATTGATTTTAAGTTAAATTTTTTTTACATTTTTGGCT
        129 TTGTAAAATTGATTTTAAGTTAAATTTTTTTTA-ATTTTTAGCT

                   *  *          
       1676 AAAACAGGCTCTAATTGAATG
          1 AAAACAGACTATAATTGAATG

       1697 TTTAACTCAA


Statistics
Matches: 161,  Mismatches: 27, Indels: 8
        0.82            0.14        0.04

Matches are distributed among these distances:
 169    1  0.01
 170  130  0.81
 171    4  0.02
 172   26  0.16

ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41


Consensus pattern (171 bp):   
AAAACAGACTATAATTGAATGCCTTCCTTGGAAAACATGTAGAAAAAGCCATTAATTAGGAAGAA
AAGTCTATCTATAGTCTCCCATTCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATT
GTAAAATTGATTTTAAGTTAAATTTTTTTTAATTTTTAGCT
Done.