Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400940.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4100.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 602

Length: 1004
ACGTcount: A:0.25, C:0.09, G:0.10, T:0.27

Warning! 295 characters in sequence are not A, C, G, or T


Found at i:904 original size:172 final size:169

Alignment explanation


    Indices: 656--982  Score: 408
    Period size: 172  Copynumber: 1.9  Consensus size: 169

        646 GAAATGTAAA

                                            *       **                       
        656 GAAAAAAAGCATTCATTGGCAAGAAAAGTCCATTTATAGTTTCCTATTTCTTCAAAAGCCTTATT
          1 GAAAAAAAGCATTCATTGGCAAGAAAAGTCCAGTTATAGTCACCTATTTCTTCAAAAGCCTTATT

            *                                       *       *        *       
        721 GCTCACTTTAAATGGTTTTATAATCTAAAAATTCATTTTAGGTTCAATTTTTTTTACAT-TATTG
         66 ACTCACTTTAAATGGTTTTATAATCTAAAAATTCATTTTAAGTTCAA-ATTTTTTACGTAT-TTG

                     * **                            
        785 GTTAAAACATATTATAATTGAATGTCTAGCTTTAGAAACTT
        129 GTTAAAACAGACAATAATTGAATGTCTAGCTTTAGAAACTT

                           *      *                                 *        
        826 GAAAAACAAGACATTTATTGGCCAGAAAAGTCCAGTTATAGTCACAC-A-TTCATTTAAAAGCCT
          1 GAAAAA-AAG-CATTCATTGGCAAGAAAAGTCCAGTTATAGTCAC-CTATTTC-TTCAAAAGCCT

             *      *                     * *    *          *                
        889 TTTTACTCGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAGTTGAAATTTTTTACGTATT
         62 TATTACTCACTTTAAATGGTTTTATAATCTAAAAATTCATTTTAAGTTCAAATTTTTTACGTATT

                                         
        954 TGGTTAAAACAGACAATAATTGAATGTCT
        127 TGGTTAAAACAGACAATAATTGAATGTCT

        983 GCCTTGAGAA


Statistics
Matches: 133,  Mismatches: 19, Indels: 9
        0.83            0.12        0.06

Matches are distributed among these distances:
 170    6  0.05
 171   42  0.32
 172   84  0.63
 173    1  0.01

ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39


Consensus pattern (169 bp):   
GAAAAAAAGCATTCATTGGCAAGAAAAGTCCAGTTATAGTCACCTATTTCTTCAAAAGCCTTATT
ACTCACTTTAAATGGTTTTATAATCTAAAAATTCATTTTAAGTTCAAATTTTTTACGTATTTGGT
TAAAACAGACAATAATTGAATGTCTAGCTTTAGAAACTT
Done.