Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400943.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4103.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2128
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.16

Warning! 1255 characters in sequence are not A, C, G, or T


Found at i:301 original size:171 final size:161

Alignment explanation


    Indices: 1--320  Score: 328
    Period size: 171  Copynumber: 1.9  Consensus size: 161

                             *                                  *            
          1 AGCCTTATTACTCATTTTAAATAGTTTTCTAATCTAATAATTGATTTTAAGTTATATTTTTTAAA
          1 AGCCTTATTACTCATTTAAAATAGTTTTCTAATCTAATAATTGATTTTAAGTGATATTTTTTAAA

                                        *      *                             
         66 AGTTTTGATTAAAACAAACAACAATTGACTTTTTATCTCAAGAAAATTGAAGACAAAAGCATTCA
         66 AGTTTTGATTAAAACAAACAACAATTGAATTTTTACCTCAAGAAAATTGAAGACAAAAGCATTCA

              * *                                    
        131 TTGATAAGAAAAGTCCATNNNNNNNNNNTCATTCCTTCAAA
        131 TTAAAAAGAAAAGTCCAT----------TCATTCCTTCAAA

                          *                     *             *              
        172 AGCCTTATTACTCGCTTTAAAATA-TTTTCTAATCTCATAATTGATTTTAGGATGA-ATCTTTTT
          1 AGCCTTATTACTC-ATTTAAAATAGTTTTCTAATCTAATAATTGATTTTAAG-TGATAT-TTTTT

              * *                  * *                 *                     
        235 -ACATTTTTGATTAAAACAGAA-TATAATTGAATTTTTACCTCGAGAAACA-TGAAGA-AAAATG
         63 AAAAGTTTTGATTAAAACA-AACAACAATTGAATTTTTACCTCAAGAAA-ATTGAAGACAAAA-G

                                     
        296 CATTCATTAAAAAGAAAAGTCCATT
        125 CATTCATTAAAAAGAAAAGTCCATT

        321 TATAGTCACC


Statistics
Matches: 129,  Mismatches: 14, Indels: 22
        0.78            0.08        0.13

Matches are distributed among these distances:
 161    1  0.01
 170    4  0.03
 171  106  0.82
 172   18  0.14

ACGTcount: A:0.38, C:0.12, G:0.09, T:0.37


Consensus pattern (161 bp):   
AGCCTTATTACTCATTTAAAATAGTTTTCTAATCTAATAATTGATTTTAAGTGATATTTTTTAAA
AGTTTTGATTAAAACAAACAACAATTGAATTTTTACCTCAAGAAAATTGAAGACAAAAGCATTCA
TTAAAAAGAAAAGTCCATTCATTCCTTCAAA
Done.