genome.fa.s37.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397290.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1682.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  649016

Tables:   1   

This is table  1  of  1  ( 109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2248--2284	17	2.2	17	90	0	56	45	5	8	40	1.56
9669--9729	31	1.9	32	90	3	97	34	4	4	55	1.43
13421--13542	60	2.0	60	85	3	165	38	5	34	21	1.77
34677--34729	26	2.0	26	81	0	61	35	9	3	50	1.53
35146--35186	18	2.2	19	86	4	57	43	12	7	36	1.70
70942--71021	40	2.0	40	85	4	108	30	3	2	63	1.25
71039--71078	21	2.0	20	95	5	71	22	0	0	77	0.77
71037--71086	20	2.4	21	86	3	75	30	0	0	70	0.88
80153--80207	28	1.9	28	81	3	65	32	0	1	65	1.03
83178--83244	35	1.9	35	90	0	107	28	34	31	5	1.81
83331--83430	14	6.9	14	65	5	56	32	6	31	31	1.82
83325--83400	15	5.1	15	71	6	57	28	5	34	31	1.80
83331--83429	43	2.3	44	96	1	182	31	6	31	31	1.82
85619--85675	27	2.0	29	83	6	73	56	1	0	42	1.10
95392--95438	17	2.8	17	75	15	53	27	36	17	19	1.93
97928--97954	6	4.5	6	100	0	54	0	33	0	66	0.92
117403--117460	20	3.0	20	75	14	68	46	18	0	34	1.50
125143--125180	19	2.0	19	100	0	76	15	42	10	31	1.81
125691--125743	2	26.5	2	100	0	106	50	0	0	49	1.00
132870--132925	3	18.7	3	85	7	69	0	37	1	60	1.07
133307--133333	10	2.7	10	100	0	54	51	11	37	0	1.37
138527--138839	139	2.2	138	88	2	464	47	9	6	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143458--143498	18	2.3	18	100	0	82	51	12	17	19	1.76
153918--153986	28	2.3	31	82	14	99	17	14	56	11	1.67
156036--156074	17	2.3	16	83	12	51	33	0	2	64	1.08
162924--162992	30	2.3	30	94	0	120	23	27	26	23	2.00
169691--169751	23	2.7	23	82	10	88	55	11	24	8	1.62
178135--178304	33	5.2	33	86	0	214	4	34	13	47	1.64
178135--178321	99	1.9	99	83	2	241	5	34	13	46	1.67
183257--183299	17	2.5	17	79	20	54	2	25	11	60	1.43
184322--184353	2	16.0	2	93	0	55	53	0	0	46	1.00
185814--185844	12	2.6	12	94	0	53	38	6	29	25	1.81
195754--195783	3	10.0	3	100	0	60	0	33	0	66	0.92
203061--203168	54	2.0	54	98	0	207	47	12	17	22	1.82
208115--208233	29	4.1	28	82	6	130	46	9	27	16	1.78
208119--208232	58	2.0	58	85	0	156	44	9	28	17	1.80
215102--215181	40	2.0	40	95	0	142	53	6	16	23	1.65
221921--221955	18	1.9	18	88	11	54	57	0	0	42	0.99
222736--222811	31	2.5	31	80	4	93	56	1	1	40	1.16
232181--232212	3	10.7	3	100	0	64	31	0	0	68	0.90
239167--239221	26	2.1	26	86	10	76	54	7	0	38	1.28
253108--253154	18	2.5	19	80	16	53	68	0	4	27	1.08
253192--253216	12	2.1	12	100	0	50	40	0	0	60	0.97
253157--253209	25	2.1	25	82	0	61	56	1	1	39	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254111--254169	27	2.1	27	84	3	73	44	1	3	50	1.28
271888--271938	26	2.0	26	88	7	77	49	0	1	49	1.12
281327--282022	104	6.7	104	85	0	933	32	11	16	35	1.85
282558--282606	22	2.3	21	80	16	57	34	0	0	65	0.93
282767--282806	15	2.7	15	96	0	71	35	25	7	32	1.84
283218--283283	33	2.0	33	90	0	105	43	12	1	42	1.51
284538--284582	17	2.8	16	80	6	54	48	2	4	44	1.35
286711--286747	13	2.9	12	92	8	56	64	0	0	35	0.94
307606--307631	2	13.0	2	100	0	52	50	0	0	50	1.00
309700--309725	11	2.4	11	100	0	52	65	0	0	34	0.93
309709--309747	16	2.4	17	82	8	53	64	0	0	35	0.94
316279--316318	2	20.0	2	100	0	80	50	0	0	50	1.00
320532--320716	95	1.9	95	84	0	244	23	22	18	36	1.95
326681--326738	30	1.9	30	89	0	89	24	6	41	27	1.80
328569--328605	15	2.5	15	91	4	58	51	10	16	21	1.74
346358--346388	2	15.5	2	100	0	62	51	0	0	48	1.00
350185--350230	2	23.0	2	84	8	58	43	0	6	50	1.28
355749--355826	40	2.0	40	100	0	156	30	12	25	30	1.93
375935--375970	18	1.9	19	88	5	56	27	0	0	72	0.85
380796--380823	7	4.0	7	100	0	56	28	14	28	28	1.95
389097--389124	2	14.0	2	100	0	56	50	0	0	50	1.00
410825--410977	76	2.0	77	93	2	265	31	19	9	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422921--423054	70	1.9	68	86	3	187	36	17	20	25	1.94
428269--428299	3	10.3	3	100	0	62	67	0	32	0	0.91
438983--439018	17	2.1	17	89	0	54	61	0	16	22	1.35
444903--444955	6	8.8	6	91	0	88	16	20	33	28	1.95
444903--444955	18	2.9	18	97	0	97	16	20	33	28	1.95
457378--457522	73	2.0	74	94	1	256	35	13	17	33	1.89
462503--462528	11	2.4	11	100	0	52	34	26	19	19	1.95
463806--463836	2	15.5	2	100	0	62	0	48	0	51	1.00
466585--466622	19	2.1	19	85	5	51	0	21	2	76	0.91
466986--467012	2	13.5	2	100	0	54	51	0	48	0	1.00
468594--468628	2	17.5	2	87	0	52	51	2	0	45	1.16
469660--469745	45	1.9	45	87	0	127	31	17	22	29	1.96
469685--469807	61	2.0	61	82	3	149	30	16	24	28	1.96
469756--469866	45	2.5	45	80	0	123	36	19	16	27	1.93
469748--469915	90	1.9	88	80	4	194	33	15	18	32	1.92
469911--470002	28	3.3	27	83	7	94	36	13	11	38	1.81
495454--495481	4	7.0	4	100	0	56	50	25	0	25	1.50
519012--519036	2	12.5	2	100	0	50	52	0	0	48	1.00
556258--556283	3	8.7	3	100	0	52	30	0	0	69	0.89
557663--557713	17	3.1	17	72	13	52	58	0	3	37	1.16
557650--557715	32	2.1	32	85	5	89	59	0	4	36	1.18
557902--557947	23	2.0	23	91	8	76	19	23	0	56	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562091--562117	6	4.5	6	100	0	54	14	33	18	33	1.92
570913--570937	2	12.5	2	100	0	50	48	0	0	52	1.00
588753--588805	23	2.3	23	86	0	79	16	28	18	35	1.93
589059--589280	81	2.8	80	86	2	293	37	7	12	43	1.70
589593--589681	28	2.9	32	76	20	107	46	3	13	37	1.60
589690--589738	23	2.1	23	92	0	80	26	16	16	40	1.89
593893--593963	23	3.1	23	87	0	88	23	30	15	29	1.95
594002--594044	18	2.4	18	92	3	70	23	25	11	39	1.88
594333--594538	81	2.6	80	87	2	279	37	7	11	43	1.70
595223--595263	8	5.1	8	96	0	64	51	7	0	41	1.30
595227--595263	2	18.5	2	88	0	56	51	5	0	43	1.24
596825--596849	3	8.3	3	100	0	50	32	0	32	36	1.58
597951--597980	2	15.0	2	100	0	60	0	50	0	50	1.00
621659--621687	7	4.1	7	100	0	58	31	27	13	27	1.94
623772--623814	22	2.0	22	85	0	59	44	6	11	37	1.68
624863--624917	22	2.5	23	76	5	60	29	10	25	34	1.90
631467--631619	69	2.2	69	83	1	191	35	17	9	37	1.82
637140--637171	2	16.0	2	100	0	64	50	0	0	50	1.00
639804--639837	2	17.0	2	100	0	68	50	0	0	50	1.00
648958--649000	7	6.1	7	97	0	59	6	13	48	30	1.69
648958--649000	14	3.1	14	93	0	68	6	13	48	30	1.69

Tables:   1

The End!