Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400958.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4119.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 949

Length: 1583
ACGTcount: A:0.24, C:0.07, G:0.09, T:0.24

Warning! 580 characters in sequence are not A, C, G, or T


Found at i:1434 original size:171 final size:161

Alignment explanation


    Indices: 1230--1561  Score: 285
    Period size: 171  Copynumber: 2.0  Consensus size: 161

       1220 NNNNNNNNNN

                                  * *              *   *        *          * 
       1230 TGAGATTATAAAACTATTTAAAGCGAATAATAAGCCTTTTGAAGGAATGGGTTACT-ATAAATCG
          1 TGAGATTATAAAACTATTTAAACCCAATAATAAGCCTTTCGAAAGAATGGGTGACTGA-AAATAG

                                   *           *    * *     *            *   
       1294 ACTTTTT-TTCTCAA-GCAATGGTTTTTTCTACACGTTTTTTGAGATATACATTCAATTATTGTC
         65 A-TTTTTCTTCTCAATG-AATGGCTTTTTCTACACCTTTTATCAGATAGACATTCAATTATAGTC

                            *                           
       1357 TGGTTTAAAGAAAAATGTAAAAAAATTCAACNNNNNNNNNNTTA
        128 TGGTTTAAAGAAAAATATAAAAAAATTCAAC----------TTA

                                       *       **                            
       1401 TGAGATTATAAAA-TCATTTAAACCCAGTAATAAGGGTTTCGAAAGAATGGGTGACTGAAAATAG
          1 TGAGATTATAAAACT-ATTTAAACCCAATAATAAGCCTTTCGAAAGAATGGGTGACTGAAAATAG

                       *                 **            *   * *  *            
       1465 ATTTTTCTTCTTAATGAATGGCTTTTTCTTTACCTTTTATCAGGTAGGCTTTTAATTATAGTCTG
         65 ATTTTTCTTCTCAATGAATGGCTTTTTCTACACCTTTTATCAGATAGACATTCAATTATAGTCTG

            *    *                          
       1530 TTTTAGAGAAAAATATAAAAAAATTCAACTTA
        130 GTTTAAAGAAAAATATAAAAAAATTCAACTTA

       1562 AAATCAATTA


Statistics
Matches: 132,  Mismatches: 25, Indels: 18
        0.75            0.14        0.10

Matches are distributed among these distances:
 161    3  0.02
 170    6  0.05
 171  121  0.92
 172    2  0.02

ACGTcount: A:0.35, C:0.11, G:0.14, T:0.37


Consensus pattern (161 bp):   
TGAGATTATAAAACTATTTAAACCCAATAATAAGCCTTTCGAAAGAATGGGTGACTGAAAATAGA
TTTTTCTTCTCAATGAATGGCTTTTTCTACACCTTTTATCAGATAGACATTCAATTATAGTCTGG
TTTAAAGAAAAATATAAAAAAATTCAACTTA
Done.