Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018400959.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_412.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 86336
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.24
Warning! 30320 characters in sequence are not A, C, G, or T
Found at i:2009 original size:171 final size:171
Alignment explanation
Indices: 1697--2012 Score: 377
Period size: 171 Copynumber: 1.8 Consensus size: 171
1687 NNNNNNNNNN
* * *
1697 CAATTATAATTTATTTTAATAAAAAATATAAAAAAATTCAAATTAAAATCAACTTTGAGGTTATA
1 CAATTACAATTTATTTTAATAAAAAATATAAAAAAATTCAAATTAAAATCAACTTTGAGATTACA
* **********
1762 AAATCATTTAAAGCGAGTAATAAAGTTTTCGAAGGCATGGGTNNNNNNNNNNGGACTTTTCTTGC
66 AAACCATTTAAAGCGAGTAATAAAGTTTTCGAAGGCATGGGTACTATAAATGGGACTTTTCTTGC
*
1827 CAATGGATATCTTTTTCTCCACGTTTCTCAAGGTAGACACT
131 CAATAGATATCTTTTTCTCCACGTTTCTCAAGGTAGACACT
* * * * *
1868 CAATTACAATTTGTTTTAGTAAGAGATATAAAAAAATTCAACTTAAAATCAA-TTATGAGATTAC
1 CAATTACAATTTATTTTAATAAAAAATATAAAAAAATTCAAATTAAAATCAACTT-TGAGATTAC
* *
1932 ACAACCATTTAAAGCGATTAAT-AAGATTTTCGAAGGCATGGGTGACTATAAATGGGA-TTTTCT
65 AAAACCATTTAAAGCGAGTAATAAAG-TTTTCGAAGGCATGGGT-ACTATAAATGGGACTTTTCT
*
1995 TGTCAATAGATATCTTTT
128 TGCCAATAGATATCTTTT
2013 GCTTCATGTT
Statistics
Matches: 119, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
170 5 0.04
171 111 0.93
172 3 0.03
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.34
Consensus pattern (171 bp):
CAATTACAATTTATTTTAATAAAAAATATAAAAAAATTCAAATTAAAATCAACTTTGAGATTACA
AAACCATTTAAAGCGAGTAATAAAGTTTTCGAAGGCATGGGTACTATAAATGGGACTTTTCTTGC
CAATAGATATCTTTTTCTCCACGTTTCTCAAGGTAGACACT
Found at i:5348 original size:171 final size:169
Alignment explanation
Indices: 4928--6288 Score: 723
Period size: 171 Copynumber: 8.0 Consensus size: 169
4918 NNNNNNNNNN
* * * * * * *
4928 TGCCAATGGATATCTTTTTCTCCTCGTTTCTTAAGGCAGACAATCAATTATAATTTGTGATAACA
1 TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGT-TTAATA
* * ********* * * *
4993 AAAAACATAAAAAAATTCAA-ATAAAANNNNNNNNNNAGGTTATAAAATCATTTAAAGCGAGTAG
65 AAAAATATAAAAAAATTCAACTTAAAA-CCAATTCTGAGATTA-AAAACCATTTAAAGCGAGTAA
* * *
5057 TAAGGTTTTCGAAGACATGGGTGACTATAAATGGACTTTTCT
128 TAAAGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCT
* * * * * * * * *******
5099 TGCCAGTGGGTATCTTTTTCTCCACATTTCTCGACGTAGACATTCAATTATAATATGNNNNNNNN
1 TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTG-TTTAATA
** *
5164 NNAAATATAAAAAAATTCAACTTAAAACCAATTCTGAGATTACACAACCATTTAAAGCGAGTAAT
65 AAAAATATAAAAAAATTCAACTTAAAACCAATTCTGAGATTA-AAAACCATTTAAAGCGAGTAAT
* * * *
5229 AAAGTTTTCAAAGGCCTGGGTGTCTATAAATGGACTTTTCT
129 AAAGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCT
* * * *
5270 TACCAATGGATATCTTTTGCTTCATGTTTCAT-TAGGCAGACATTCAATTATAATCTGTTATAAT
1 TGCCAATGGATATCTTTTTCTTCACGTTTC-TCAAGGCAGACATTCAATTATAATCTGTT-TAAT
* * ************ * ** * *
5334 AAAAAATCTAAAAAACTTCAACTTAANNNNNNNNNNNNNG-TTATGAAGTCATTTAATGCGATTA
64 AAAAAATATAAAAAAATTCAACTTAA-AACCAATTCTGAGATTA-AAAACCATTTAAAGCGAGTA
* ** * * * *
5398 ATAAGGAATTCAAAAGTATGGGTGACTATGAATGGACTTTTCT
127 ATAAAGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCT
* * ** ** *
5441 TGCCAATGGATATATTTTTCTTCACGTTTTTTGAGATAGACATTCAATTGTAATCTGTTTTAATA
1 TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTG-TTTAATA
* * * * * ********** *
5506 AAAAATATTATAAAATTTAAATTAAAATCANNNNNNNNNNTATAAAATCATTTAAAGCGAGTAAT
65 AAAAATATAAAAAAATTCAACTTAAAACCAATTCTGAGATTA-AAAACCATTTAAAGCGAGTAAT
* * *
5571 -AAGCCTTTTGAAGGCATGGGCGACTATAAATAGACTTTTCT
129 AAAG-CTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCT
* * * * *********
5612 TACCAATGGATTTCTTTTTCTTCACGTTTCTCAAGGCAAACAATCAATTATNNNNNNNNNNAATA
1 TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTAT-AATCTGTTTAATA
* * * * *
5677 AAAAATGTAAAAAAGTTCAACTTAAAACTAATTATGAGATTAAAAGACCATTCAAAGCGAGTAAT
65 AAAAATATAAAAAAATTCAACTTAAAACCAATTCTGAGATTAAAA-ACCATTTAAAGCGAGTAAT
* * * * *
5742 AAGGCTTCCGGAGGCATGGGTGACTATAAAAGGACTTTTCA
129 AAAGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCT
* * * * ** * *
5783 TGCCAATGAATATCTTTTTCTTCAAGTTTCTCGAGGTAGTTATTCAATTATAATATATTTTAAT-
1 TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCT-GTTTAATA
** * * * * * *
5847 AAAAAT-GCAAAAAGTTCAACTTAAAACTAATTAT-ACGATTAAAAAACCATTTAAGGAGCGTAA
65 AAAAATATAAAAAAATTCAACTTAAAACCAATTCTGA-GATT-AAAAACCATTTAAAGCGAGTAA
* * *
5910 T-AAGCCTTTTGAAGGTATGTGTGACTATAAATGGACTTTTCT
128 TAAAG-CTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCT
* * * ********** *
5952 TGCGAATGGATATCTTTTTCTTCATGTTTCTCAAGGAANNNNNNNNNNTATAATATGTGTTAATA
1 TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGT-TTAATA
* * * *
6017 AAAAATATAAAAAAATTTGAA-TTAAAATCAATTAC-GAGGTTATAAAATCATTTAAAGCGAGTA
65 AAAAATATAAAAAAA-TTCAACTTAAAACCAATT-CTGAGATTA-AAAACCATTTAAAGCGAGTA
* * *
6080 AT-AAGCCTTTCGAAGGCGTGGGTGACTATCAGTGGAC-TTTCTT
127 ATAAAG-CTTTCGAAGGCATGGGTGACTATAAATGGACTTTTC-T
* * ***********
6123 TGCCAACGGATATCATTTTCTTTNNNNNNNNNNAGGCAGACATTCAATTATAATCTGTGTTAATA
1 TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGT-TTAATA
* * * **
6188 AAAAATGTAAAAAATTTCAACTTAAAACTAATTAC-GAGATTAAAAATCTTTTTAAAGCGAGTAA
65 AAAAATATAAAAAAATTCAACTTAAAACCAATT-CTGAGATTAAAAA-CCATTTAAAGCGAGTAA
* *
6252 TAAGGCTTTCAAAGGCATGGGTGACTATAAATGGACT
128 TAAAGCTTTCGAAGGCATGGGTGACTATAAATGGACT
6289 NNNNNNNNNN
Statistics
Matches: 882, Mismatches: 280, Indels: 55
0.72 0.23 0.05
Matches are distributed among these distances:
168 4 0.00
169 121 0.14
170 42 0.05
171 697 0.79
172 18 0.02
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.32
Consensus pattern (169 bp):
TGCCAATGGATATCTTTTTCTTCACGTTTCTCAAGGCAGACATTCAATTATAATCTGTTTAATAA
AAAATATAAAAAAATTCAACTTAAAACCAATTCTGAGATTAAAAACCATTTAAAGCGAGTAATAA
AGCTTTCGAAGGCATGGGTGACTATAAATGGACTTTTCT
Found at i:8490 original size:171 final size:170
Alignment explanation
Indices: 8123--8530 Score: 448
Period size: 170 Copynumber: 2.4 Consensus size: 170
8113 NNNNNNNNNN
* * *
8123 GGACTTTTCTTGCCAATGGATATCTTTTGCTTCATGTTTCATTAGGCAGACATTCAATTATAATC
1 GGACTTTTCTTGCCAATGGATATCTTTTGCTTCACGTTTCATGAGGCAGACATTCAATTACAATC
* * * * *
8188 TACTATAATAAAAAATCTAAAAAATATCAACTGAAAATCAACTATGAGGTTATAAAATCATTAAA
66 TACTATAATAAAAAATATAAAAAATATCAACTGAAAATCAACTATAAGATTACAAAACCATTAAA
* * * *
8253 GCGAGCAATAAGGTTTTCAAAGGCTTGGTTGACTATAAAT
131 GCGAACAATAAAGTTTTCAAAGGCATGGGTGACTATAAAT
* * *
8293 GGACTTTTCTTGCCAATGGATATCTTTTTC-TCTACGTTTC-TCGAGGTAGACATTCAATTACAG
1 GGACTTTTCTTGCCAATGGATATCTTTTGCTTC-ACGTTTCAT-GAGGCAGACATTCAATTACAA
** * * * * *
8356 TCTGTTTTGATAAAAAATATAAAAAA-ATTCAACTTAAAATCAATTATAAGATTACACAACCATT
64 TCTACTATAATAAAAAATATAAAAAATA-TCAACTGAAAATCAACTATAAGATTACAAAACCA-T
* *
8420 TAAAGC-AACTAATAAAGTTTTCGAAGGCATGGGTGACTGTAAAT
127 TAAAGCGAAC-AATAAAGTTTTCAAAGGCATGGGTGACTATAAAT
* ** * * *
8464 GTG-CTTTTCTTGCCAATAGATATCTTTTGCTTCATATTTCGTGAGACCAGACATTCAATTATAA
1 G-GACTTTTCTTGCCAATGGATATCTTTTGCTTCACGTTTCATGAG-GCAGACATTCAATTACAA
8528 TCT
64 TCT
8531 GTTTTAATAN
Statistics
Matches: 197, Mismatches: 32, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
169 4 0.02
170 102 0.52
171 70 0.36
172 21 0.11
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (170 bp):
GGACTTTTCTTGCCAATGGATATCTTTTGCTTCACGTTTCATGAGGCAGACATTCAATTACAATC
TACTATAATAAAAAATATAAAAAATATCAACTGAAAATCAACTATAAGATTACAAAACCATTAAA
GCGAACAATAAAGTTTTCAAAGGCATGGGTGACTATAAAT
Found at i:9196 original size:169 final size:169
Alignment explanation
Indices: 8882--9494 Score: 581
Period size: 171 Copynumber: 3.6 Consensus size: 169
8872 NNNNNNNNNN
* * *
8882 GGATTTCTTTTTCTTCACGTTTCTCAAGGCAGACAATCAATTATAATCTGTTTTTATAAAAAATG
1 GGATATCTTTTTCTTCACGTTTCTCAAGGCAGACAATCAATTATAATCTGTGTTAATAAAAAATG
* * * * * * *****
8947 TAAAAACGTTCAACCTAAAATTAATTATGAGATTAAAAAACCATTTAAAGCGAGTAATAANNNNN
66 -AAAAAAGTTCAACTTAAAACTAATTATGAGATTAAAAAATCATTTAAAGAGCGTAATAAGCCTT
*****
9012 NNNNNGGCATGGGTGACTATAAAAAGACTTTTCATGCCAAT
130 TCGAAGGCATGGGTGACTAT-AAAAGACTTTTCATGCCAAT
* * * * * * *
9053 GAATATCTTTTTCTTCATGTTTCTCAAGGTAGTCATTCAATTATAATCTATTTTAAT-AAAAATG
1 GGATATCTTTTTCTTCACGTTTCTCAAGGCAGACAATCAATTATAATCTGTGTTAATAAAAAATG
* *
9117 CAAAAAGTTCAACTTAAAACTAATTAT-ACCATTAAAAAATCATTTAAAGAGCGTAATAAGCCTT
66 AAAAAAGTTCAACTTAAAACTAATTATGA-GATTAAAAAATCATTTAAAGAGCGTAATAAGCCTT
* ** * * *
9181 TTGAAGGTTTGGGTGACTATAAATGAACTTTTCTTGCGAAT
130 TCGAAGGCATGGGTGACTATAAAAG-ACTTTTCATGCCAAT
* * * *
9222 GGATATCTTTTTCTTTACGTTTCTCAAGGAAAACAATCAATTATAATATGTGTTAATAAAAAATA
1 GGATATCTTTTTCTTCACGTTTCTCAAGGCAGACAATCAATTATAATCTGTGTTAATAAAAAAT-
* * ** * *
9287 TAAAACAATTTGTA-TTAAAA-TCAATTATGAGGTTATAAAATCATTTAAAGAGAC-TAATAAGC
65 GAAAA-AAGTTCAACTTAAAACT-AATTATGAGATTAAAAAATCATTTAAAGAG-CGTAATAAGC
* ** *
9349 CTTTCGAAGGCGTGGGTGACTATCAATGGACTTTTCATGCCAAC
127 CTTTCGAAGGCATGGGTGACTAT-AAAAGACTTTTCATGCCAAT
* * * ** * *
9393 GGACATCATTTTCTTTACGTTGT-TTGAGGCAGACATTCAATTACAATCTGTGTTAATAAAAAAT
1 GGATATCTTTTTCTTCACGTT-TCTCAAGGCAGACAATCAATTATAATCTGTGTTAATAAAAAAT
*
9457 GTAAAAAAGTTCAACTTAAAACTAATTACGAGATTAAA
65 G-AAAAAAGTTCAACTTAAAACTAATTATGAGATTAAA
9495 NNNNNNNNNN
Statistics
Matches: 356, Mismatches: 73, Indels: 26
0.78 0.16 0.06
Matches are distributed among these distances:
168 5 0.01
169 122 0.34
170 19 0.05
171 198 0.56
172 12 0.03
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.34
Consensus pattern (169 bp):
GGATATCTTTTTCTTCACGTTTCTCAAGGCAGACAATCAATTATAATCTGTGTTAATAAAAAATG
AAAAAAGTTCAACTTAAAACTAATTATGAGATTAAAAAATCATTTAAAGAGCGTAATAAGCCTTT
CGAAGGCATGGGTGACTATAAAAGACTTTTCATGCCAAT
Found at i:11333 original size:171 final size:171
Alignment explanation
Indices: 11029--11676 Score: 425
Period size: 171 Copynumber: 3.8 Consensus size: 171
11019 ATAAAATCAC
* * * *
11029 TTAAAGCGAGTAATAAGGCTTTCGAAGGAATGGGCGACTATAAATGGACTTTTCTTACTACTGTA
1 TTAAAGCGAGTAATAAGGCTTTCGAAGGAATGGGCGACTATAAATAGACTTTTCTTACCAATGGA
* * *** * *
11094 TATCTTTTTCTTTATGTTTCTCGAGGCAGGTATTTAATTATAATCTGTTTTAATAAAAATAATAA
66 TATCTTTTTCTTCACGTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAATAAAAATAATAA
11159 AAAAATTCAACCTAAAACAAAATATGAGTTTACAAAACTAT
131 AAAAATTCAACCTAAAACAAAATATGAGTTTACAAAACTAT
* * * * *
11200 TTAAAGTGAGTAATAAGGTTTTCGAAGGCAT-GGCTTAGTATAAATAGACTTTTCTTACCAATGG
1 TTAAAGCGAGTAATAAGGCTTTCGAAGGAATGGGC-GACTATAAATAGACTTTTCTTACCAATGG
* * * *
11264 ATATCTTTTTCTTCACGTTTCTCTAGGCAAACGTTCAATTATAATTTATTTTAATTAAAAAT-GT
65 ATATCTTTTTCTTCACGTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAA-TAAAAATAAT
* * * **********
11328 AAAAAACTTCAACTTAAAATC-AATTATGTAG-NNNNNNNNNNAT
129 AAAAAAATTCAACCTAAAA-CAAAATATG-AGTTTACAAAACTAT
* * * * * *
11371 TTAATGCGAGTAATAAGGCTTTCAAAGGTATGGGTGA-TCAAAAAT-GAACTTTTCTTGCCAATG
1 TTAAAGCGAGTAATAAGGCTTTCGAAGGAATGGGCGACT-ATAAATAG-ACTTTTCTTACCAATG
* * * * * * *
11434 GATATCTTTTTCTTCATGTTTTTCGAGGTAAGCATTCAGTTATAATTTGTTTTAATCAAAAAT-A
64 GATATCTTTTTCTTCACGTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAAT-AAAAATAA
*** * ** * * * *
11498 TTGTAAAATTTAAGTTAAAATC-AATTATGAGGTTATAAAA-TAAG
128 TAAAAAAATTCAACCTAAAA-CAAAATATGAGTTTACAAAACT-AT
* * ********** * * *
11542 TTAGAGCGAGTAATAAGACTTTCNNNNNNNNNNGTGACTATAAATGGACTTTTCTTACCAACGGA
1 TTAAAGCGAGTAATAAGGCTTTCGAAGGAATGGGCGACTATAAATAGACTTTTCTTACCAATGGA
* * * * * * * *
11607 TATCTTTTTTTTCATGTTTCTCGAGGTATATATTTAATTATAATATATTTTATTAAAAA-ATATA
66 TATCTTTTTCTTCACGTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAATAAAAATA-ATA
11671 AAAAAA
130 AAAAAA
11677 CTCAGCTNNN
Statistics
Matches: 367, Mismatches: 96, Indels: 28
0.75 0.20 0.06
Matches are distributed among these distances:
170 13 0.04
171 340 0.93
172 14 0.04
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.37
Consensus pattern (171 bp):
TTAAAGCGAGTAATAAGGCTTTCGAAGGAATGGGCGACTATAAATAGACTTTTCTTACCAATGGA
TATCTTTTTCTTCACGTTTCTCGAGGCAAACATTCAATTATAATCTATTTTAATAAAAATAATAA
AAAAATTCAACCTAAAACAAAATATGAGTTTACAAAACTAT
Found at i:13536 original size:172 final size:169
Alignment explanation
Indices: 13052--14570 Score: 579
Period size: 171 Copynumber: 9.0 Consensus size: 169
13042 NNNNNNNNNN
* * *
13052 ACTTAAAACTAATTATGAGATTAAAAAACCATTTCAAGCGAGTAATAAGGCTTTTGAAGGCATGA
1 ACTTAAAACTAATTATGAGATTAAAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGG
* * * * * * * *
13117 GTGACTGTAAAAGGACTTTTCTTGCCAATGGATATCTTTTTGTACAAATTTCCCGATGCAGAC-T
66 GTGACTATAAAAGGACTTTTCTTG-CAATGAATATCTTTTTCTTCAAGTTTCTCGAGGCAGTCAT
* *
13181 ATCAATTATAATCTATTTTAATAAAAAATTTTAAAAAATTTA
130 -TCAATTATAATCTGTTTTAATAAAAAA-TATAAAAAATTTA
* * * * * * *
13223 ATTTAAAACTAATTATGAGATTACACAACCATTTAAAGCAAGTAGTAAGGTTTTCGAAGGCACGG
1 ACTTAAAACTAATTATGAGATTAAAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGG
* * ********* * * * * *
13288 GTGACTATAAATGGACTTCTCTTGCNNNNNNNNNNCATTTTCTTTACGTTTTTTGAGGCAGAT-A
66 GTGACTATAAAAGGACTTTTCTTGC-AATGAATATCTTTTTCTTCAAGTTTCTCGAGGCAG-TCA
13352 TTCAATTATAATCTGTTTTAATAAAAAATATAAAAAATTTCA
129 TTCAATTATAATCTGTTTTAATAAAAAATATAAAAAATTT-A
* * *
13394 ACTTAAAAATAATTATGAGATTAAAAAATCATTTAAAGGCGAGTAAAAAGGCTTTCGAAGGCATG
1 ACTTAAAACTAATTATGAGATTAAAAAACCATTTAAA-GCGAGTAATAAGGCTTTCGAAGGCATG
* * * *
13459 GGTGACTATAAAAGAACTTTTCATGTCAATGAATATCTTTTTCTTCATGTTTCTCGAGGTAGTCA
65 GGTGACTATAAAAGGACTTTTCTTG-CAATGAATATCTTTTTCTTCAAGTTTCTCGAGGCAGTCA
* *
13524 TTCAACTATAATCTGTTTTAAT-AAAAATGT--AAAA---A
129 TTCAATTATAATCTGTTTTAATAAAAAATATAAAAAATTTA
* **************************** * *
13559 AGTT-----T-ANNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAATAAGTCTTTTGAAGGCATGG
1 ACTTAAAACTAATTATGAGATTAAAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGG
* * * ** *
13618 GTGACTATAAATGGACTTTTCTTGCCAAT-AGATATCTCTTTCTTCACA-TTTCTCAAGAAAAAT
66 GTGACTATAAAAGGACTTTTCTTG-CAATGA-ATATCTTTTTCTTCA-AGTTTCTCGAG-GCAGT
* * * *
13681 -AATCAACTATAATCTGTGTTAATAGAAAATATAAAAAAATTTA
127 CATTCAATTATAATCTGTTTTAATAAAAAATAT-AAAAAATTTA
* * * ******************
13724 AATTAAAA-TCAATTATGAGGTTATAAAATNNNNNNNNNNNNNNNNNAAGGCTTTCGAAGGCATG
1 ACTTAAAACT-AATTATGAGATTAAAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
* * * * * * *
13788 AGTGATTATAAATGGACTTTTCTTGCCAATGGATATATTTTTCTTCATGTTTCTC-AGGTAGAT-
65 GGTGACTATAAAAGGACTTTTCTTG-CAATGAATATCTTTTTCTTCAAGTTTCTCGAGGCAG-TC
* * * ** ****
13851 ATTCAACTACAATCTATTTTAACCAAAAATATAAAAAANNNNN
128 ATTCAATTATAATCTGTTTTAATAAAAAATATAAAAAA-TTTA
***** * * ** * * *******
13894 NNNNNAAA-TCAATTATGAGGTTATAAAAGAATTTAAGGCGAGTAATAAGGCTTTTGANNNNNNN
1 ACTTAAAACT-AATTATGAGATTAAAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATG
*** * * * * ** * * * * * *
13958 NNNGACTATAAATGGACTTCTCTTATCAATGGATAT-AATTTCTTTACGTTTTTTGAGGTAGACA
65 GGTGACTATAAAAGGACTTTTCTT-GCAATGAATATCTTTTTCTTCAAGTTTCTCGAGGCAGTCA
* * * * *
14022 ATCAATTATGATCTATTTTAATAAAAAATGT-TAAAATGTTCA
129 TTCAATTATAATCTGTTTTAATAAAAAATATAAAAAAT-TT-A
* * * **********
14064 ACTTAAAACTAATTATGTGATGAACAAACCATTTAAAGCGAGTAATAAGGCTTTNNNNNNNNNNG
1 ACTTAAAACTAATTATGAGATTAAAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGG
* * * * * *
14129 GTGACTATAAAAGGACTTTTCTTGCCAAT-AGATATCGTTTTGTACAAGTTTCCCGATGCAGACA
66 GTGACTATAAAAGGACTTTTCTTG-CAATGA-ATATCTTTTTCTTCAAGTTTCTCGAGGCAGTCA
* * * **
14193 TTCAATTATAATATATTTTAATAAAAAATTTAAAGAAATACA
129 TTCAATTATAATCTGTTTTAATAAAAAATATAAA-AAATTTA
* * * **********
14235 ACTTAAAACTAATTATGAGATTACACAACTATTTAAAGCGANNNNNNNNNNTTTCGAAGGCATGG
1 ACTTAAAACTAATTATGAGATTAAAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGG
* * * * * * * * * *
14300 GTGACTATAAATGGACTTCTATTGCCAATGGATATCATGTTCTTTACGTTT-TTGAGGCAGACAT
66 GTGACTATAAAAGGACTTTTCTTG-CAATGAATATCTTTTTCTTCAAGTTTCTCGAGGCAGTCAT
*
14364 TCAATTATAATCTATTTTAATAAAAAATATAAAAAATTTCA
130 TCAATTATAATCTGTTTTAATAAAAAATATAAAAAATTT-A
* * * * *
14405 ATTTAAAAATAATTATGAGATTAAAAAATCATTTAAACCGAGTAATAAGGTTTTCGAAGGCATGG
1 ACTTAAAACTAATTATGAGATTAAAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGG
* * * ** * * * **
14470 GTGACTATCAATGAACTTTTCTTGCCAGGGGATATCTTTTTCTTGATA-TTTCTCGAGGTAAACA
66 GTGACTATAAAAGGACTTTTCTTG-CAATGAATATCTTTTTCTTCA-AGTTTCTCGAGGCAGTCA
*
14534 TTCAATTATAATATGTTTTAATAAAAAATATAAAAAA
129 TTCAATTATAATCTGTTTTAATAAAAAATATAAAAAA
14571 ATTCAACNNN
Statistics
Matches: 976, Mismatches: 330, Indels: 84
0.70 0.24 0.06
Matches are distributed among these distances:
157 1 0.00
158 90 0.09
159 9 0.01
160 1 0.00
162 4 0.00
165 8 0.01
169 32 0.03
170 336 0.34
171 403 0.41
172 87 0.09
173 5 0.01
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.33
Consensus pattern (169 bp):
ACTTAAAACTAATTATGAGATTAAAAAACCATTTAAAGCGAGTAATAAGGCTTTCGAAGGCATGG
GTGACTATAAAAGGACTTTTCTTGCAATGAATATCTTTTTCTTCAAGTTTCTCGAGGCAGTCATT
CAATTATAATCTGTTTTAATAAAAAATATAAAAAATTTA
Found at i:14422 original size:170 final size:170
Alignment explanation
Indices: 13961--14577 Score: 445
Period size: 170 Copynumber: 3.6 Consensus size: 170
13951 NNNNNNNNNN
* * ** * * * * * * * *
13961 GACTATAAATGGACTTCTCTTATCAATGGATATAAT-TTCTTTACGTTTTTTGAGGTAGACAATC
1 GACTATAAATGAACTTCTATTGCCAAGGGATATCATGTTCTTGACATTTCTCGAGGCAGACATTC
* * * ** * * * *
14025 AATTATGATCTATTTTAATAAAAAATGTTAAAATGTTCAACTTAAAACTAATTATGTGATGAACA
66 AATTATAATATATTTTAATAAAAAAT-ATAAAAAATTCAACTTAAAAATAATTATGAGATTAAAA
* * * **********
14090 AACCATTTAAAGCGAGTAATAAGGCTTTNNNNNNNNNNGGT
130 AATCATTTAAACCGAGTAATAAGGTTTTCGAAGGCATGGGT
* * * * ** * *
14131 GACTATAAAAGGACTTTTCTTGCCAATAGATATC--GTT-TTGTACAAGTTTCCCGATGCAGACA
1 GACTATAAATGAACTTCTATTGCCAAGGGATATCATGTTCTTG-AC-A-TTTCTCGAGGCAGACA
* * *
14193 TTCAATTATAATATATTTTAATAAAAAATTTAAAGAAATACAACTTAAAACTAATTATGAGATTA
63 TTCAATTATAATATATTTTAATAAAAAATATAAA-AAATTCAACTTAAAAATAATTATGAGATTA
* * * **********
14258 CACAA-CTATTTAAAGCGANNNNNNNNNNTTTCGAAGGCATGGGT
127 AAAAATC-ATTTAAACCGAGTAATAAGGTTTTCGAAGGCATGGGT
* * * * *
14302 GACTATAAATGGACTTCTATTGCCAATGGATATCATGTTCTTTACGTTT-TTGAGGCAGACATTC
1 GACTATAAATGAACTTCTATTGCCAAGGGATATCATGTTCTTGACATTTCTCGAGGCAGACATTC
* *
14366 AATTATAATCTATTTTAATAAAAAATATAAAAAATTTCAATTTAAAAATAATTATGAGATTAAAA
66 AATTATAATATATTTTAATAAAAAATATAAAAAA-TTCAACTTAAAAATAATTATGAGATTAAAA
14431 AATCATTTAAACCGAGTAATAAGGTTTTCGAAGGCATGGGT
130 AATCATTTAAACCGAGTAATAAGGTTTTCGAAGGCATGGGT
* * * * * * * * *
14472 GACTATCAATGAACTTTTCTTGCCAGGGGATATCTTTTTCTTGATATTTCTCGAGGTAAACATTC
1 GACTATAAATGAACTTCTATTGCCAAGGGATATCATGTTCTTGACATTTCTCGAGGCAGACATTC
*
14537 AATTATAATATGTTTTAATAAAAAATATAAAAAAATTCAAC
66 AATTATAATATATTTTAATAAAAAATAT-AAAAAATTCAAC
14578 NNNNNNNNNN
Statistics
Matches: 346, Mismatches: 88, Indels: 25
0.75 0.19 0.05
Matches are distributed among these distances:
168 2 0.01
169 7 0.02
170 166 0.48
171 158 0.46
172 6 0.02
173 5 0.01
174 2 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.34
Consensus pattern (170 bp):
GACTATAAATGAACTTCTATTGCCAAGGGATATCATGTTCTTGACATTTCTCGAGGCAGACATTC
AATTATAATATATTTTAATAAAAAATATAAAAAATTCAACTTAAAAATAATTATGAGATTAAAAA
ATCATTTAAACCGAGTAATAAGGTTTTCGAAGGCATGGGT
Found at i:14490 original size:341 final size:331
Alignment explanation
Indices: 13961--14577 Score: 691
Period size: 341 Copynumber: 1.8 Consensus size: 331
13951 NNNNNNNNNN
* * *
13961 GACTATAAATGGACTTCTCTTATCAATGGATATAATTTCTTTACGTTTTTTGAGGTAGACAATCA
1 GACTATAAATGGACTTCTATTACCAATGGATATAATTTCTTTACGTTTTTTGAGGCAGACAATCA
* * * * * *
14026 ATTATGATCTATTTTAATAAAAAATGTTAAAATGTTCAACTTAAAACTAATTATGTGATGAACAA
66 ATTATAATCTATTTTAATAAAAAATATAAAAATGTTCAACTTAAAAATAATTATGAGATGAAAAA
* ********** *
14091 ACCATTTAAAGCGAGTAATAAGGCTTTNNNNNNNNNNGGTGACTATAAAAGGACTTTTCTTGCCA
131 ACCATTTAAACCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAAAGAACTTTTCTTGCCA
* * * *
14156 ATAGATATCGTTTTGTACA-AGTTTCCCGATGCAGACATTCAATTATAATATATTTTAATAAAAA
196 AGAGATATCGTTTTCTACATA-TTTCCCGAGGCAAACATTCAATTATAATATATTTTAATAAAAA
* *
14220 ATTTAAAGAAATACAACTTAAAACTAATTATGAGATTACACAACTATTTAAAGCGANNNNNNNNN
260 ATATAAAAAAATACAACTTAAAACTAATTATGAGATTACACAACTATTTAAAGCGA---------
14285 NTTTCGAAGGCATGGGT
316 -TTTCGAAGGCATGGGT
* * *
14302 GACTATAAATGGACTTCTATTGCCAATGGATATCATGTTCTTTACG-TTTTTGAGGCAGACATTC
1 GACTATAAATGGACTTCTATTACCAATGGATATAAT-TTCTTTACGTTTTTTGAGGCAGACAATC
* *
14366 AATTATAATCTATTTTAATAAAAAATATAAAAAAT-TTCAATTTAAAAATAATTATGAGATTAAA
65 AATTATAATCTATTTTAATAAAAAATAT-AAAAATGTTCAACTTAAAAATAATTATGAGATGAAA
* * * *
14430 AAATCATTTAAACCGAGTAATAAGGTTTTCGAAGGCATGGGTGACTATCAATGAACTTTTCTTGC
129 AAACCATTTAAACCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAAAGAACTTTTCTTGC
* * * ** * * *
14495 CAGGGGATATCTTTTTCTTGATATTTCTCGAGGTAAACATTCAATTATAATATGTTTTAATAAAA
194 CAAGAGATATCGTTTTCTACATATTTCCCGAGGCAAACATTCAATTATAATATATTTTAATAAAA
*
14560 AATATAAAAAAATTCAAC
259 AATATAAAAAAATACAAC
14578 NNNNNNNNNN
Statistics
Matches: 228, Mismatches: 45, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
341 213 0.93
342 15 0.07
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.34
Consensus pattern (331 bp):
GACTATAAATGGACTTCTATTACCAATGGATATAATTTCTTTACGTTTTTTGAGGCAGACAATCA
ATTATAATCTATTTTAATAAAAAATATAAAAATGTTCAACTTAAAAATAATTATGAGATGAAAAA
ACCATTTAAACCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAAAGAACTTTTCTTGCCA
AGAGATATCGTTTTCTACATATTTCCCGAGGCAAACATTCAATTATAATATATTTTAATAAAAAA
TATAAAAAAATACAACTTAAAACTAATTATGAGATTACACAACTATTTAAAGCGATTTCGAAGGC
ATGGGT
Found at i:15690 original size:170 final size:160
Alignment explanation
Indices: 15499--15812 Score: 321
Period size: 170 Copynumber: 1.9 Consensus size: 160
15489 TTTCTTTACA
* * * *
15499 TTTCTCGAGATAGATATTCAATTAT-AA-TATTTTTTAATAAAAATATAAAAACATTCAACTTAA
1 TTTCTCGAGATAGACATTCAATTATGAATTACTTTAT-A-AAAAATATAAAAAAATTCAACTTAA
* *
15562 AA-CTAATTATAAGATTATAAAATTATTTAAAGCA-AGTAATAAGGCTTTCAAAGGCATGGGTTA
64 AATC-AATTATAAGATTATAAAATCATTTAAA-CATAGTAATAAGGCTTTCAAAGGCATGGGTGA
*
15625 CAATATATGGACTTTTCTTGTCAATGGATATCTNNNNNNNNNNG
127 CAATAAATGGACTTTTCTTGTCAATGGATATCT----------G
* * * *
15669 TTTCTTGAGGTAGACATTCAATTATGACTTACTTTATAAAAAATATAAAAAAATTGAACTTAAAA
1 TTTCTCGAGATAGACATTCAATTATGAATTACTTTATAAAAAATATAAAAAAATTCAACTTAAAA
* * * * * *
15734 TCAATTATGAGGTTATAAAATCATTTAAACATAGTAATAGGGTTTTCAAAGGTATGGGTGACTAT
66 TCAATTATAAGATTATAAAATCATTTAAACATAGTAATAAGGCTTTCAAAGGCATGGGTGACAAT
15799 AAATGGACTTTTCT
131 AAATGGACTTTTCT
15813 NNNNNNNNNN
Statistics
Matches: 123, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
169 2 0.02
170 112 0.91
171 3 0.02
172 6 0.05
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.35
Consensus pattern (160 bp):
TTTCTCGAGATAGACATTCAATTATGAATTACTTTATAAAAAATATAAAAAAATTCAACTTAAAA
TCAATTATAAGATTATAAAATCATTTAAACATAGTAATAAGGCTTTCAAAGGCATGGGTGACAAT
AAATGGACTTTTCTTGTCAATGGATATCTG
Found at i:16868 original size:170 final size:160
Alignment explanation
Indices: 16578--16887 Score: 302
Period size: 170 Copynumber: 1.9 Consensus size: 160
16568 ACTAATTATG
* *
16578 AGATTAAAAAAATCATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATAGGTGAGTATAAAAGGAC
1 AGATTAAAAAAATCATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATAGGTGACTATAAAAGCAC
* * * ** * *
16643 TTTTAATGCCAATAAATATCTTTTCCTTCATGTTTCTAGACGTAGTCATTCAATTATAATCTGTT
66 TTTTAATCCCAATAAATATCTTTTCCTTCACGTTTCTAGAC-AAAACAATCAATTATAATCTGTG
16708 TTAATAAAAATGCAAAAAAGTTCAACTTAAA
130 TTAATAAAAATGCAAAAAAGTTCAACTTAAA
* * * *
16739 NNNNNNNNNNAGATTAAAAAACT-ATTTAAAGCGAGTAAT-AAGCCTTTTGAAGGTATGGGTGAC
1 ----------AGATTAAAAAAATCATTTAAAGCGAGTAATAAAG-CTTTCGAAGGCATAGGTGAC
* ** ** *
16802 TATAAATGCACTTTTCTTCCCAATGGATATCTTTTTCTTCACGTTTCTCAAGA-AAAACAATCAA
55 TATAAAAGCACTTTTAATCCCAATAAATATCTTTTCCTTCACGTTTCT--AGACAAAACAATCAA
16866 TTATAATCTGTGTTAATAAAAA
118 TTATAATCTGTGTTAATAAAAA
16888 ATATAAACAA
Statistics
Matches: 117, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
169 3 0.03
170 99 0.85
171 12 0.10
172 3 0.03
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.33
Consensus pattern (160 bp):
AGATTAAAAAAATCATTTAAAGCGAGTAATAAAGCTTTCGAAGGCATAGGTGACTATAAAAGCAC
TTTTAATCCCAATAAATATCTTTTCCTTCACGTTTCTAGACAAAACAATCAATTATAATCTGTGT
TAATAAAAATGCAAAAAAGTTCAACTTAAA
Found at i:16975 original size:171 final size:171
Alignment explanation
Indices: 16537--17183 Score: 522
Period size: 171 Copynumber: 3.8 Consensus size: 171
16527 NNNNNNNNNN
* * * *
16537 TAATAAAAAATATAAAAAAGTTCAACTTAAAACTAATTATGAGATTAAAAAAATCATTTAAAGCG
1 TAATAAAAAATATAAAAAAGTTCAAATTAAAACCAATTATGAGATTAAAAAACTTATTTAAAGCG
* * * ** **
16602 AGTAATAAAG-CTTTCG-AAGGCATAGGTGAGTATAAAAGGACTTTTAATGCCAATAAATATCTT
66 AGTAAT-AAGCCTTT-GAAAGGCATGGGTGACTAT-AAATGACTTTTCTTGCCAATGGATATCTT
* * * ** * * *
16665 TTCCTTCATGTTTCT--AGACGTAGTCATTCAATTATAATCTGTTT
128 TTTCTTCACGTTTCTCAAGA--AAAACAATCAATTACAATCTGTGT
** * **********
16709 TAAT-AAAAATGCAAAAAAGTTCAACTTAAANNNNNNNNNNAGATTAAAAAAC-TATTTAAAGCG
1 TAATAAAAAATATAAAAAAGTTCAAATTAAAACCAATTATGAGATTAAAAAACTTATTTAAAGCG
* *
16772 AGTAATAAGCCTTTTG-AAGGTATGGGTGACTATAAATGCACTTTTCTTCCCAATGGATATCTTT
66 AGTAATAAGCC-TTTGAAAGGCATGGGTGACTATAAATG-ACTTTTCTTGCCAATGGATATCTTT
*
16836 TTCTTCACGTTTCTCAAGAAAAACAATCAATTATAATCTGTGT
129 TTCTTCACGTTTCTCAAGAAAAACAATCAATTACAATCTGTGT
** **********
16879 TAATAAAAAATATAAACAAA-TTCAAATTAAAATTAATTATNNNNNNNNNNAA-TTATTTAAAGC
1 TAATAAAAAATATAAA-AAAGTTCAAATTAAAACCAATTATGAGATTAAAAAACTTATTTAAAGC
* * * * * *
16942 GAGTAATAAGCCTTTGAAAGGCCTAGGTGACTATCAATGGACTTTTCCTGGCAATGGATATCATT
65 GAGTAATAAGCCTTTGAAAGGCATGGGTGACTATAAAT-GACTTTTCTTGCCAATGGATATCTTT
* * * ** ** * *
17007 TTCTTTATGTTTTTTGAGGCAAACATTCAATTACAATCTGTTT
129 TTCTTCACGTTTCTCAAGAAAAACAATCAATTACAATCTGTGT
* **
17050 TAATAAAAAATGTAAAAAAGTTCAGCTTAAAACCAATTATGAGATTAAAAAACTT-TTTAAAGCG
1 TAATAAAAAATATAAAAAAGTTCAAATTAAAACCAATTATGAGATTAAAAAACTTATTTAAAGCG
** *
17114 AGTAATAAGGTTTTGAAAGGCATGGGTGACTATAAATAGACTTTTCTTGTCAATGGATATCTTTT
66 AGTAATAAGCCTTTGAAAGGCATGGGTGACTATAAAT-GACTTTTCTTGCCAATGGATATCTTTT
17179 TCTTC
130 TCTTC
17184 NNNNNNNNNN
Statistics
Matches: 369, Mismatches: 94, Indels: 25
0.76 0.19 0.05
Matches are distributed among these distances:
169 7 0.02
170 94 0.25
171 255 0.69
172 13 0.04
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.33
Consensus pattern (171 bp):
TAATAAAAAATATAAAAAAGTTCAAATTAAAACCAATTATGAGATTAAAAAACTTATTTAAAGCG
AGTAATAAGCCTTTGAAAGGCATGGGTGACTATAAATGACTTTTCTTGCCAATGGATATCTTTTT
CTTCACGTTTCTCAAGAAAAACAATCAATTACAATCTGTGT
Found at i:17940 original size:171 final size:170
Alignment explanation
Indices: 17337--18703 Score: 852
Period size: 171 Copynumber: 8.0 Consensus size: 170
17327 NNNNNNNNNN
** ** * * *
17337 ATATAAAAAAATTCAAATTAAAATTAATTATGAGGTTATAAAATCATTTAAAGCTACTAATAAGG
1 ATATAAAAAAATTCAAACCAAAAACAATTATGAGGTTATGAAATCATTTAAAGCGAGTAATAAGG
* * * * * *
17402 CTTTTGAAGACATGGATGACTATAAATGGACTTTTATTGCCAATGGATATCTTTTCCTTCACGTT
66 CTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCTTGCCAATGGATATCTTTTTCTTCACGTT
*
17467 TCTCGAGGTAAACATT-ATATTATAATCTGTTTTAATAAAAA
131 TCTCGAGG-CAACATTCA-ATTATAATCTGTTTTAATAAAAA
* * ********** * * *
17508 CATAT-AAAAAATTC-AACTTAAAATCAATTATGNNNNNNNNNNAGCATTTAAGGGGAGTAATAA
1 -ATATAAAAAAATTCAAAC-CAAAAACAATTATGAGGTTATGAAATCATTTAAAGCGAGTAATAA
* * * * * * * * *
17571 GGCTTTCAAAGGCATGGGTGGCTATAAATGGACTTCTCTTTCTAATGGATATCATTTTCTTTACA
64 GGCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCTTGCCAATGGATATCTTTTTCTTCACG
* * * **********
17636 TTTTTTGAGGCAGACATTTAATTATAATCTGTNNNNNNNNNNA
129 TTTCTCGAGGCA-ACATTCAATTATAATCTGTTTTAATAAAAA
* * * * ** * *
17679 ATATAAAAAAAATC-AACTTAAAAATAATTATGAGCTTAACAAACCATTTATAGCGAGTAATAAG
1 ATATAAAAAAATTCAAAC-CAAAAACAATTATGAGGTTATGAAATCATTTAAAGCGAGTAATAAG
********** * *
17743 GCTTTCGAAGNNNNNNNNNNCTATAAATAGACTTTTCTTGCCAATGGATTTCTTTTTCTTCATGT
65 GCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCTTGCCAATGGATATCTTTTTCTTCACGT
* *
17808 TT-TCCAAGGCAGACATTCAATTATAATCTGGTTTAATAAAAA
130 TTCT-CGAGGCA-ACATTCAATTATAATCTGTTTTAATAAAAA
********** * * *
17850 ATATAAAAAAATNNNNNNNNNNATCAATTATGAGGTTATGAAATCATTTAATGAGAGTAATAAGG
1 ATATAAAAAAATTCAAACCAAAAACAATTATGAGGTTATGAAATCATTTAAAGCGAGTAATAAGG
* * *
17915 CTTTC-ATAGGCATGGGGGACTATAAATAGACTTTTCTTGCCAATGGATATTTTTTTCTTTACGT
66 CTTTCGA-AGGCATGGGTGACTATAAATAGACTTTTCTTGCCAATGGATATCTTTTTCTTCACGT
** * *
17979 TTCTCGAGTTAGACATTCAA-TATAATAT-TTCTTAGT-AAAA
130 TTCTCGAGGCA-ACATTCAATTATAATCTGTT-TTAATAAAAA
** ********** * *
18019 ATATAAAAAAAATTCAAATTAAAANNNNNNNNNNGGTTATAAAATCACTTAAAGCGAGTAATAAG
1 ATAT-AAAAAAATTCAAACCAAAAACAATTATGAGGTTATGAAATCATTTAAAGCGAGTAATAAG
* * * * * * **
18084 GCCTTCGAAGGAATGGGTGACTATAAATGGACTTTTCTTACTACTGGATATCTTTTTCTTCATAT
65 GCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCTTGCCAATGGATATCTTTTTCTTCACGT
18149 TTCTCGAGGCAAGCATTCAATTATAATCTGTTTTAAT-AAAA
130 TTCTCGAGGCAA-CATTCAATTATAATCTGTTTTAATAAAAA
* * * * *
18190 ATAATAAAAAAATTC-ATCCAAAAACAAAATATGAGTTTA-CAAAACAATTTAAAGCGAGTAATA
1 AT-ATAAAAAAATTCAAACCAAAAAC-AATTATGAGGTTATGAAATC-ATTTAAAGCGAGTAATA
* * * *
18253 AGGCTTTCGAAGGCATGGGTTAATATAAATAGACTTTTCTTACCAATGGATATCTTTTTATTCAC
63 AGGCTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCTTGCCAATGGATATCTTTTTCTTCAC
*
18318 GTTTCTCGAGGAAAACATTCAATTATAATCTGTTTTAATAAAAA
128 GTTTCTCGAGG-CAACATTCAATTATAATCTGTTTTAATAAAAA
* * ********** *
18362 ATGTAAAAAACTTCAANNNNNNNNNNATTATGAGGTTATGAAATCATTTAATGCGAGTAATAAGG
1 ATATAAAAAAATTCAAACCAAAAACAATTATGAGGTTATGAAATCATTTAAAGCGAGTAATAAGG
* * * * * * *
18427 CTTTCAAAGGTATGGATGACCATAAATGGACTTTCCTTGCCAATAGATATCTTTTTCTTCACGTT
66 CTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCTTGCCAATGGATATCTTTTTCTTCACGTT
* * * *
18492 TTTCAAGGTAAGCATTCAATTATAATCTATTTTAATAAAAA
131 TCTCGAGGCAA-CATTCAATTATAATCTGTTTTAATAAAAA
* * ****************** * *
18533 ATATTATANNNNNNNNNNNNNNNNNNATTATGAGGTTATAAAATCATTTAAAGCGAGTAATAAGA
1 ATATAAAAAAATTCAAACCAAAAACAATTATGAGGTTATGAAATCATTTAAAGCGAGTAATAAGG
* * * * *
18598 CTTTCGAAGGCATGAGTAATTATAAATGGACTTTTCTTGCCAATGGATATCATTTTT-TTCATGT
66 CTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCTTGCCAATGGATATC-TTTTTCTTCACGT
* * *
18662 TTCTCGAGGTAGATATTCAATTATAATCTATTTTAATAAAAA
130 TTCTCGAGGCA-ACATTCAATTATAATCTGTTTTAATAAAAA
18704 NNNNNNNNNN
Statistics
Matches: 912, Mismatches: 259, Indels: 49
0.75 0.21 0.04
Matches are distributed among these distances:
169 10 0.01
170 135 0.15
171 738 0.81
172 29 0.03
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.34
Consensus pattern (170 bp):
ATATAAAAAAATTCAAACCAAAAACAATTATGAGGTTATGAAATCATTTAAAGCGAGTAATAAGG
CTTTCGAAGGCATGGGTGACTATAAATAGACTTTTCTTGCCAATGGATATCTTTTTCTTCACGTT
TCTCGAGGCAACATTCAATTATAATCTGTTTTAATAAAAA
Found at i:20141 original size:171 final size:170
Alignment explanation
Indices: 19690--20158 Score: 494
Period size: 171 Copynumber: 2.7 Consensus size: 170
19680 NNNNNNNNNN
* * ** *
19690 CTATAAATGGACTTTTCTTACCAATGGATATCTTTTTCTTTACGTTTCTTGA-GATAGATATTCA
1 CTATAAATGGACTTTTCTTTCCAATGGATATCTTTTTCTTAACGTTTCTCAATG-TAGACATTCA
* * * * * *
19754 ATTATAATATTTTTTAATAAAAATATTAAAACATTCAAATTAAAATCAATTATGAGGTTATAAAA
65 ATTATAATCTGTTTTAATAAAAATATAAAAAAATTCAAATTAAAATCAATTATAAAGTTATAAAA
19819 TCATTTGAAGTGAGTAATAAGCCTTCCGAAGGCATGAGTGA
130 TCATTTGAAGTGAGTAATAAGCCTTCCGAAGGCATGAGTGA
* * *
19860 CTATAAATGGACTTTTCTTTTCAATGGATATCTTTTTCTTAATGTTTCTCAATGCAGACATTCAA
1 CTATAAATGGACTTTTCTTTCCAATGGATATCTTTTTCTTAACGTTTCTCAATGTAGACATTCAA
* * * * * *
19925 TCATAATCTGTTTTATTAAAAAATGTAAAGAAATTCAACTTAAAATCAATTATAAAGTTATTAAA
66 TTATAATCTGTTTTAAT-AAAAATATAAAAAAATTCAAATTAAAATCAATTATAAAGTTATAAAA
* * * * *
19990 TCATTT-AATTTGAGTAATAAGGCTTTCGAAGGTATGGGTGA
130 TCATTTGAA-GTGAGTAATAAGCCTTCCGAAGGCATGAGTGA
* * **********
20031 CTATAAATGGTCTTTT-TTTGCCAATGGATATCTTTTTCTTCACGNNNNNNNNNNTAGACATTCA
1 CTATAAATGGACTTTTCTTT-CCAATGGATATCTTTTTCTTAACGTTTCTCAATGTAGACATTCA
* * * * *
20095 CTTATAATCTGTTTTAATAAAAATATAAAAAAAATTTAAGTTAAAATCAATTATGATGTTATAA
65 ATTATAATCTGTTTTAATAAAAATAT-AAAAAAATTCAAATTAAAATCAATTATAAAGTTATAA
20159 NNNNNNNNNN
Statistics
Matches: 244, Mismatches: 50, Indels: 9
0.81 0.17 0.03
Matches are distributed among these distances:
170 80 0.33
171 164 0.67
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.39
Consensus pattern (170 bp):
CTATAAATGGACTTTTCTTTCCAATGGATATCTTTTTCTTAACGTTTCTCAATGTAGACATTCAA
TTATAATCTGTTTTAATAAAAATATAAAAAAATTCAAATTAAAATCAATTATAAAGTTATAAAAT
CATTTGAAGTGAGTAATAAGCCTTCCGAAGGCATGAGTGA
Found at i:20762 original size:18 final size:17
Alignment explanation
Indices: 20724--20757 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
20714 TTAGAAAATC
20724 AAAATTAAAACCAATTAT
1 AAAATTAAAA-CAATTAT
20742 AAAATTAAAA-AATTAT
1 AAAATTAAAACAATTAT
20758 TTAAAGCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
18 10 0.62
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAATTAAAACAATTAT
Found at i:22035 original size:170 final size:170
Alignment explanation
Indices: 21191--22413 Score: 670
Period size: 171 Copynumber: 7.2 Consensus size: 170
21181 NNNNNNNNNN
* * **
21191 CGAAGGTATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATCTTTTT-TTCACGTTTCCC
1 CGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATGTTTTTCTTCACGTTTCTT
* * * * * ******** *
21255 AAAGCAAACATTCAATTATAATCTGTTTTAANNNNNNNNNNA-AAAAAATTCAACTTAAAATCAA
66 GAGGTAAGCATTCAATTATAATATGTTTTAA--TAAAAAATATAAAAAATTCAAATTAAAATCAA
* * * * *
21319 TTTTGAGGTTATGAAATCATTTAATGAGAGTAATAAGGCTTT
129 TTATGAGGTTATAAAATCATTTAAAGCGAGTAATAAGGTTTT
* * * * *
21361 CGAAGGCATGGGTGACTATAAATGGACTTTTCGTGCTAATGAATATCTTTTTCTTCATGTATT-T
1 CGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATGTTTTTCTTCACGT-TTCT
* * * ******** * *
21425 CGAGGT-AGACATTCAATTATAATTTATTTTAANNNNNNNNNNA-AAAAAATTTAAATTAAATTC
65 TGAGGTAAG-CATTCAATTATAATATGTTTTAA--TAAAAAATATAAAAAATTCAAATTAAAATC
* * *
21488 AACTATGAGGGTATAAAATCATTTAAAGTGAGTAATAAGGTTTT
127 AATTATGAGGTTATAAAATCATTTAAAGCGAGTAATAAGGTTTT
** ********************** *
21532 TAAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAANNNNNNNNNNNNNNNNNNNNNNTCTC
1 CGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATGTTTTTCTTCACGTTTCTT
* * * * * *
21597 GAGGTAAACATTCAATTACAATCTGTTTTAGTAAAAAATATAAAAAAATTCAACTT--AACCAAT
66 GAGGTAAGCATTCAATTATAATATGTTTTAATAAAAAATAT-AAAAAATTCAAATTAAAATCAAT
* * * * *
21660 TATGAGATTACACAACCATTTAAAGCG-GTTAATAAAG-TTT
130 TATGAGGTTATAAAATCATTTAAAGCGAG-TAATAAGGTTTT
* ********** * * * * *
21700 CGAAGGCATGGGTGACTATAAATGGGCTNNNNNNNNNNATAGATATCTTTTGCTTCATGTTTCGT
1 CGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATGTTTTTCTTCACGTTTCTT
*** * * * *
21765 GAGACCAGACATTCAACTATAATCTGTTTTAATAAAAAAAAGTAAAAAACTTCAACTTAAAATCA
66 GAGGTAAG-CATTCAATTATAATATGTTTTAATAAAAAATA-TAAAAAA-TTCAAATTAAAATCA
************** * **
21830 ATTATGNNNNNNNNNNNNNNTTTAATGCGAGTAATAAGGAATT
128 ATTATGAGGTTATAAAATCATTTAAAGCGAGTAATAAGGTTTT
* * *
21873 C-AATGGTATGGGTGGCTATAAATGGACTTTT-TTGCCAATGGATATGTTTTTCTTCACGTTTTT
1 CGAA-GGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATGTTTTTCTTCACGTTTCT
* * * * *
21936 TGAGATAAGCATTCAATTAAAATTTGTTTTAATAAAAAATAGTATAAAATTTAAATTAAAATCAA
65 TGAGGTAAGCATTCAATTATAATATGTTTTAATAAAAAATA-TAAAAAATTCAAATTAAAATCAA
* * * *
22001 TTATAAGGTTATAAAATCTTTTAAAGTGAGTAATAAGGCTTT
129 TTATGAGGTTATAAAATCATTTAAAGCGAGTAATAAGGTTTT
** * * * *
22043 CGAAGATATGGGTGACAATAAATGAACTTTTCTTGCCAATGGATATGTTTTTCTTTATGTTTCTT
1 CGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATGTTTTTCTTCACGTTTCTT
* * * ** ********* *
22108 AAGGTAAACAATCAATTATAATATGTGATAATAAAAAANNNNNNNNNNTTCAAATAAAAATCAAT
66 GAGGTAAGCATTCAATTATAATATGTTTTAATAAAAAA-TATAAAAAATTCAAATTAAAATCAAT
*
22173 TATGAGGTTTTAAAATCATTTAAAGCGAGTAATAAGGTTTT
130 TATGAGGTTATAAAATCATTTAAAGCGAGTAATAAGGTTTT
* * * * * * *
22214 CGAATGCATGGGTGCCTATAAATGGACTTTTCTTGCCAGTGAATATCTTTTTCTCCACATTTCTT
1 CGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATGTTTTTCTTCACGTTTCTT
* * * * * *
22279 GAGGT-AGACATTGAATTATAATATATTTTAATTAAAAATATAAAAAAATTCAACTTAAAACCAG
66 GAGGTAAG-CATTCAATTATAATATGTTTTAATAAAAAATAT-AAAAAATTCAAATTAAAATCAA
* * * * *
22343 TTATGAGATTACACAACCATTTAAAGCGAGTAATAAAGTTTT
129 TTATGAGGTTATAAAATCATTTAAAGCGAGTAATAAGGTTTT
22385 CGAAGGCATGGGTGACTATAAATGGACTT
1 CGAAGGCATGGGTGACTATAAATGGACTT
22414 NNNNNNNNNN
Statistics
Matches: 777, Mismatches: 255, Indels: 41
0.72 0.24 0.04
Matches are distributed among these distances:
168 36 0.05
169 67 0.09
170 121 0.16
171 471 0.61
172 57 0.07
173 25 0.03
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.33
Consensus pattern (170 bp):
CGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGATATGTTTTTCTTCACGTTTCTT
GAGGTAAGCATTCAATTATAATATGTTTTAATAAAAAATATAAAAAATTCAAATTAAAATCAATT
ATGAGGTTATAAAATCATTTAAAGCGAGTAATAAGGTTTT
Found at i:23208 original size:170 final size:171
Alignment explanation
Indices: 22828--23303 Score: 393
Period size: 170 Copynumber: 2.8 Consensus size: 171
22818 TTATAAAATC
* * * * * * * *
22828 ATTTAAAGCGAGTAATAGGGCTTTCGAAGGCATGGGCGACTATAAATGGACTTTTCTTGTCAATG
1 ATTTAAAGAGCGTAATAAGCCTTTCAAAGGCATGGGTGACTATAAATGGACTTTTCATGCCAATG
** * * *
22893 GTTTTCTTTTTCTTCACGTTTCTCAACGCAGACAATCAATTATAATCTGTTTTAATAAAAAATAT
66 AATATCTTTTTCTTCACATTTCTCAACGCAGACAATCAATTATAATCTGTTTTAATAAAAAATAC
* * * *
22958 AGAAAAGTTCAACTAAAAACTAATTATGAGATTAGAAAACT
131 AAAAAACTTCAACTAAAAACTAATTATAAGATTAAAAAACT
********** * *
22999 ATNNNNNNNNNNTAATAAGGCTTTCGAAGGCAT-GGTGACTATAGAA-GGACTTTTCATGCCAAT
1 ATTTAAAGAGCGTAATAAGCCTTTCAAAGGCATGGGTGACTATA-AATGGACTTTTCATGCCAAT
* ** * * * * *
23062 GAATATCTTTTTCTTTACATTTCTTGAGGTAGTCATTCAATTATAATCTGTTTTAAT-AAAAATG
65 GAATATCTTTTTCTTCACATTTCTCAACGCAGACAATCAATTATAATCTGTTTTAATAAAAAATA
* *
23126 CAAAAAACTTCAACTTAAAACTAATTATAATATTAAAAAACT
130 CAAAAAACTTCAACTAAAAACTAATTATAAGATTAAAAAACT
* **********
23168 ATTTAAAGAGCGTAATAAGCCTTTTAAAGGCATGGGTGACTATAAATGGACNNNNNNNNNNAAT-
1 ATTTAAAGAGCGTAATAAGCCTTTCAAAGGCATGGGTGACTATAAATGGACTTTTCATGCCAATG
* * * * * *
23232 AGATATCTTTTTCTTCACATTTCTCAAGGAAAACAATAAATTATAATATGTGTTAATAAAAAATA
66 A-ATATCTTTTTCTTCACATTTCTCAACGCAGACAATCAATTATAATCTGTTTTAATAAAAAATA
*
23297 TAAAAAA
130 CAAAAAA
23304 ATTTAAATTA
Statistics
Matches: 232, Mismatches: 68, Indels: 10
0.75 0.22 0.03
Matches are distributed among these distances:
169 64 0.28
170 132 0.57
171 36 0.16
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.33
Consensus pattern (171 bp):
ATTTAAAGAGCGTAATAAGCCTTTCAAAGGCATGGGTGACTATAAATGGACTTTTCATGCCAATG
AATATCTTTTTCTTCACATTTCTCAACGCAGACAATCAATTATAATCTGTTTTAATAAAAAATAC
AAAAAACTTCAACTAAAAACTAATTATAAGATTAAAAAACT
Found at i:24838 original size:171 final size:173
Alignment explanation
Indices: 24471--24856 Score: 431
Period size: 171 Copynumber: 2.2 Consensus size: 173
24461 NNNNNNNNNN
* * ** **
24471 GAAGGCATGGGCGACTATAAATAGACTTTTCTTGCCAATGGATTTCTTTTTCTTTTTCTTCATGT
1 GAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGAAATCTTTTTC---TTCCACATGT
* * * * **
24536 TTCTTGAGGTAGACATTTAATTATAATTTATTTAATAAAAAATATAAAAAAATTTAAATTAAATT
63 TTCTTGAGGTAGACATTCAATTACAATCTATTTAATAAAAAATATAAAAAAATTCAAATTAAAAC
* * * * *
24601 GAACTATAAGGTTATAAAATCATTTAAAGCGAGTAAAAAGTTTGTC
128 CAACTAGAAGATTACAAAACCATTTAAAGCGAGTAAAAAGTTTGTC
** *
24647 GAAGGCATCAGTGGCTATAAATGGACTTTTCTTGCCAATGGAAATCTTTTTC-TCCACAT-TTT-
1 GAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGAAATCTTTTTCTTCCACATGTTTC
* * * *
24709 TTGAGGTAGACATTCAATTGCAATCTATTTTAGTAAAAAATATAAGAAAATTCAACTTAAAACCA
66 TTGAGGTAGACATTCAATTACAATCTA-TTTAATAAAAAATATAAAAAAATTCAAATTAAAACCA
* * *
24774 ATTAGAAGATTACACAACCATTTAAAGCG-GCTCATAAAGTTT-TC
130 ACTAGAAGATTACAAAACCATTTAAAGCGAG-T-AAAAAGTTTGTC
*
24818 GAAGGCATGGGTGACTATAAATGGGCTTTTCTTGCCAAT
1 GAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAAT
24857 AGANNNNNNN
Statistics
Matches: 176, Mismatches: 31, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
170 24 0.14
171 94 0.53
172 13 0.07
176 45 0.26
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.35
Consensus pattern (173 bp):
GAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGAAATCTTTTTCTTCCACATGTTTC
TTGAGGTAGACATTCAATTACAATCTATTTAATAAAAAATATAAAAAAATTCAAATTAAAACCAA
CTAGAAGATTACAAAACCATTTAAAGCGAGTAAAAAGTTTGTC
Found at i:25914 original size:26 final size:26
Alignment explanation
Indices: 25866--25943 Score: 133
Period size: 26 Copynumber: 3.1 Consensus size: 26
25856 ATATTTTTTA
*
25866 CTAAAACAG--ATTGTAATTGAATGT
1 CTAAAACAGACATTATAATTGAATGT
25890 CTAAAACAGACATTATAATTGAATGT
1 CTAAAACAGACATTATAATTGAATGT
25916 CTAAAACAGACATTATAATTGAATGT
1 CTAAAACAGACATTATAATTGAATGT
25942 CT
1 CT
25944 GCCTCAAACA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
24 9 0.18
26 42 0.82
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.32
Consensus pattern (26 bp):
CTAAAACAGACATTATAATTGAATGT
Found at i:28102 original size:170 final size:168
Alignment explanation
Indices: 27426--28190 Score: 632
Period size: 170 Copynumber: 4.5 Consensus size: 168
27416 NNNNNNNNTC
* * * * * **
27426 TGTTTTAATAAAAAATATTATAAAATTTAAATTAAAATCAATTATGAGTTTATAAAATTGTTTAA
1 TGTTTTAATAAAAAATATAAAAAAATTTAACTTAAAA-CAATTATGAGATTA-AAAAATCATTAA
* * * *
27491 AGCGAGTAATAAGGCTTTCGAAGGCATAGGCGACTGTAAATAGACTTTTCTTGCCAATGGATTTC
64 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGGATAT-
* * ** *
27556 TTTTTCTACACGTTTCTCAATACAGACAATCAATTATAATC
128 TTTTTCTTCACATTTCTCAAGGCAGACAATCAATTATAATA
* * * ********* *
27597 TGTTTTAATAAAAAATGTAAAAAAGTTCAACTNNNNNNNNNNTATGAGATTAAAAAACCATTTAA
1 TGTTTTAATAAAAAATATAAAAAAATTTAACT-TAAAACAATTATGAGATTAAAAAATCA-TTAA
* * * * * *
27662 AGCGAGTAATAAGGCTTTCGAAGGTATAGGTGACCATAAAAGGACTTTTCATACCAATGAATATC
64 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGGATAT-
* * * * *
27727 TTTTTCTTCACATTTCTCGAGGTAGTCATTCAATTATAATC
128 TTTTTCTTCACATTTCTCAAGGCAGACAATCAATTATAATA
* * * * ** *
27768 TGTTTTAAT-AAAAATACAAAAAAGTTCAACTTAAAACTAATTATAATTTTAAAAAACCATTTAA
1 TGTTTTAATAAAAAATATAAAAAAATTTAACTTAAAAC-AATTATGAGATTAAAAAATCA-TTAA
** * * * **
27832 ATAGCGTAATAAGCCTTTTGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGGATNNN
64 AGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGGAT-AT
******* * * *
27897 NNNNNNNTCACGTTTCTCAAGGAAAACAATCAATTATAATA
128 TTTTTCTTCACATTTCTCAAGGCAGACAATCAATTATAATA
* * * * *
27938 TGTGTTAATAAAAAAAATAAAAAAATTTAAATTACAATCAATTATGAGATTATAAAATCATTAAA
1 TGTTTTAATAAAAAATATAAAAAAATTTAACTTA-AAACAATTATGAGATTAAAAAATCATTAAA
* * * *
28003 GCGAGTAATAAGCCTTTCGAAGGCATAGGTGACTATCAATGGACTTTTCTTGTCAACGGATATTA
65 GCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGGATATT-
* * * ** * *
28068 TTTTCTTTATATTTTTTGAGGCAGACATTCAATTACAATA
129 TTTTCTTCACATTTCTCAAGGCAGACAATCAATTATAATA
* * * * **
28108 TGTTTTAATAAAAAGTATAAAAAATTTTCACTTAAAACTAATTACGAGATTAAAAAACTTTTTAA
1 TGTTTTAATAAAAAATATAAAAAAATTTAACTTAAAAC-AATTATGAGATTAAAAAA-TCATTAA
28173 AGCGAGTAATAAGGCTTT
64 AGCGAGTAATAAGGCTTT
28191 NNNNNNNNNN
Statistics
Matches: 456, Mismatches: 129, Indels: 18
0.76 0.21 0.03
Matches are distributed among these distances:
169 3 0.01
170 257 0.56
171 193 0.42
172 3 0.01
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.34
Consensus pattern (168 bp):
TGTTTTAATAAAAAATATAAAAAAATTTAACTTAAAACAATTATGAGATTAAAAAATCATTAAAG
CGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTTCTTGCCAATGGATATTTT
TTCTTCACATTTCTCAAGGCAGACAATCAATTATAATA
Found at i:29089 original size:170 final size:170
Alignment explanation
Indices: 28657--29128 Score: 491
Period size: 171 Copynumber: 2.8 Consensus size: 170
28647 NNNNNNNNNN
28657 GACATTCAATTATAATCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAAGTAATTATGAG
1 GACATTCAATTATAATCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAA-TAATTATGAG
* * *** * * * *
28722 TTTATAAAAGCATTTAAGGTGAGTAATAACGCTTTCGAAGGCATAGATGACTATAAAAGGACTTC
65 ATTATAAAACCATTTAATAAGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTT
* * ***
28787 TCTTCCTAATGGATATCATTTTCTAAACATTTTTGAAGGCA
130 TATTCCTAATAGATATCATTTTCTAAACATTTCCCAAGGCA
*********
28828 GACATTCAATTATAATCTGTTTTAATAAAAAATGTAAAAAAATTCAANNNNNNNNNNATTATGAG
1 GACATTCAATTATAATCTGTTTTAATAAAAAATGTAAAAAAATTCAA-CTTAAAATAATTATGAG
* *
28893 ATTAAAAAACCATTT-ATAGCGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
65 ATTATAAAACCATTTAATA-AGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTT
* ** * * *
28957 TTATTGCC-AATAGATATC-TTTTTTTCACGTTTCCCAGGGTA
129 TTATT-CCTAATAGATATCATTTTCTAAACATTTCCCAAGGCA
* * * * * *
28998 GACATTCAATTATAATTTATTCTAATAAAAAATATAAAAAAATTCAACTTTAAATCAATTGTGAG
1 GACATTCAATTATAATCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAAT-AATTATGAG
* * * * * *
29063 GTTATGAAATCATTTAATAAGAGTAATAAGGCTTTCAAAGGCATGGGAGACTATAAATGGACTTT
65 ATTATAAAACCATTTAATAAGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTT
29128 T
130 T
29129 CTTGTCNNNN
Statistics
Matches: 244, Mismatches: 52, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
170 119 0.49
171 123 0.50
172 2 0.01
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.33
Consensus pattern (170 bp):
GACATTCAATTATAATCTGTTTTAATAAAAAATGTAAAAAAATTCAACTTAAAATAATTATGAGA
TTATAAAACCATTTAATAAGAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAATGGACTTTT
ATTCCTAATAGATATCATTTTCTAAACATTTCCCAAGGCA
Found at i:30443 original size:169 final size:169
Alignment explanation
Indices: 30014--30890 Score: 567
Period size: 169 Copynumber: 5.2 Consensus size: 169
30004 NNNNNNNNNN
* * * *
30014 AGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAAAGGACTTTTCTTG-TAATGGATATC
1 AGCGAGTAATAAGGCTTTCGAAGGTATGGGTTACTATAAATGGACTTTTCTTGCCAATGGATATC
* * ** *
30078 TTTTTCTTCACGTTTCTC-AGTGCAGACATTCAATTCTAGGC-GATTTTAATAAAAAATGTAAAA
66 TTTTTCTTCACGTTTCTCTAG-GTAGACATTCAATTATAATCTG-TTTT-AT-AAAAATATAAAA
*********** ** **
30141 AAATTTNNNNNNNNNNCAATTATGAGGTTATGAAATCATTTAA
127 AAATTCAAATTAAAATCAATTATGAAATTAAAAAATCATTTAA
* * * * * * ****
30184 AGTGAGTAATATA-ACTTTCGAAGGCATGGGTGCAC-ATAAATAGACTTTTCTTGCCAAAGNNNN
1 AGCGAGTAATA-AGGCTTTCGAAGGTATGGGT-TACTATAAATGGACTTTTCTTGCCAATGGATA
****** * ** *
30247 NNNNNNTCATT-ACGTTTCT-TGAGGTAGACATTAAAAAATAATATGTTTTAATAAAAATAT-AA
64 TCTTTTTC-TTCACGTTTCTCT-AGGTAGACATTCAATTATAATCTGTTTT-ATAAAAATATAAA
* * *
30309 AAAA-TCTAAATTAAAACCAATTATGAAATTAAAAAACCACTTAA
126 AAAATTC-AAATTAAAATCAATTATGAAATTAAAAAATCATTTAA
* * *
30353 AGCGAGTAATAAGGCTTTCGAAGGTATGGGTTACTATATATAGACTTTTCTTGTCAATGGATATC
1 AGCGAGTAATAAGGCTTTCGAAGGTATGGGTTACTATAAATGGACTTTTCTTGCCAATGGATATC
* * *
30418 TTTTTCTTCATGTTTCTCTAGGTAGACATTCAATTATAACCTGCTTTATAAAAATATAAAAAAAT
66 TTTTTCTTCACGTTTCTCTAGGTAGACATTCAATTATAATCTGTTTTATAAAAATATAAAAAAAT
* **********
30483 TCAACTTAAAATCAATTATGNNNNNNNNNNATCATTTAA
131 TCAAATTAAAATCAATTATGAAATTAAAAAATCATTTAA
* * * *
30522 AGCAAGTAATAAGGTTTTCGAAGGTAT-GGTTGACTATAAATGGACTTTTCTTACCACTGGATAT
1 AGCGAGTAATAAGGCTTTCGAAGGTATGGGTT-ACTATAAATGGACTTTTCTTGCCAATGGATAT
* * * * * *
30586 CTTTTTTTTCCCATTTCTCGAGGTAGACAGTCAATTATAATCTATTTTCATAAAAATATAAAAAA
65 CTTTTTCTTCACGTTTCTCTAGGTAGACATTCAATTATAATCTGTTTT-ATAAAAATATAAAAAA
* * * **
30651 ATTCAAATTAAAATCAAATAT-AAGGTTATAAAATTTTTTAA
129 ATTCAAATTAAAATCAATTATGAA-ATTAAAAAATCATTTAA
* * ****
30692 AGCGAGTAATAA-GCTTTCCGAAGGCATGGGTGACTATAAATGGACTTTTCTTGCCAATGGNNNN
1 AGCGAGTAATAAGGCTTT-CGAAGGTATGGGTTACTATAAATGGACTTTTCTTGCCAATGGATAT
****** * * *
30756 NNNNNNCTTCATGTTTCT-TAATGCAGACATTCAATTATAATCTGTTTTAATATAAAATATAAAA
65 CTTTTTCTTCACGTTTCTCT-AGGTAGACATTCAATTATAATCTGTTTT-ATA-AAAATATAAAA
* * ** ** *
30820 AAATTGAACTTAAAA-CAAATTATGAGGTTATGAAATGATTTAA
127 AAATTCAAATTAAAATC-AATTATGAAATTAAAAAATCATTTAA
**
30863 TTCGAGTAATAAGGCTTTCGAAGGTATG
1 AGCGAGTAATAAGGCTTTCGAAGGTATG
30891 NNNNNNNNNN
Statistics
Matches: 536, Mismatches: 147, Indels: 47
0.73 0.20 0.06
Matches are distributed among these distances:
168 20 0.04
169 229 0.43
170 176 0.33
171 100 0.19
172 11 0.02
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.34
Consensus pattern (169 bp):
AGCGAGTAATAAGGCTTTCGAAGGTATGGGTTACTATAAATGGACTTTTCTTGCCAATGGATATC
TTTTTCTTCACGTTTCTCTAGGTAGACATTCAATTATAATCTGTTTTATAAAAATATAAAAAAAT
TCAAATTAAAATCAATTATGAAATTAAAAAATCATTTAA
Found at i:35893 original size:171 final size:160
Alignment explanation
Indices: 35669--36000 Score: 448
Period size: 170 Copynumber: 2.0 Consensus size: 160
35659 TTAGTCGAAT
* * *
35669 TAAATGATTTCATAACCTCATAATTAATTTTAAGTTGAATTTCTTTACATTTTTTATTAAAACAT
1 TAAATGATTTCATAACCTCATAATCAATTTTAAGTTAAATTTCTTTACA-TTTTTATTAAAACAG
*
35734 ATTATAATTGAATGTTTACATCAAAAAACGTGAAGAAAAAGATATCCATTGGCAAGAAAAGTCCT
65 ATTATAATTGAATGTTTACATCAAAAAACGTGAAGAAAAAGACATCCATTGGCAAGAAAAGTCCT
35799 TTTATAATCACTTATGCCTTCAAAAGCCTTA
130 TTTATAATCACTTATGCCTTCAAAAGCCTTA
*
35830 NNNNNNNNNNTAAATGATTTCATAACCTCATAATCGATTTTAAGTTAAATTTCTTTACATTTTTA
1 ----------TAAATGATTTCATAACCTCATAATCAATTTTAAGTTAAATTTCTTTACATTTTTA
** * *
35895 TTAAAACAGATTATAATTGAATGTTTGTATCAAAAAACGTGAAGAAAAAGACGTCCATTGGCAGG
56 TTAAAACAGATTATAATTGAATGTTTACATCAAAAAACGTGAAGAAAAAGACATCCATTGGCAAG
** * *
35960 AAAAGTTTTTTTATAGTCACTTATGCCTTCGAAAGCCTTA
121 AAAAGTCCTTTTATAATCACTTATGCCTTCAAAAGCCTTA
36000 T
1 T
36001 TACTCGCTTG
Statistics
Matches: 148, Mismatches: 13, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
160 1 0.01
170 101 0.68
171 46 0.31
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.36
Consensus pattern (160 bp):
TAAATGATTTCATAACCTCATAATCAATTTTAAGTTAAATTTCTTTACATTTTTATTAAAACAGA
TTATAATTGAATGTTTACATCAAAAAACGTGAAGAAAAAGACATCCATTGGCAAGAAAAGTCCTT
TTATAATCACTTATGCCTTCAAAAGCCTTA
Found at i:47009 original size:170 final size:167
Alignment explanation
Indices: 46787--47245 Score: 437
Period size: 170 Copynumber: 2.7 Consensus size: 167
46777 CAGGTTATAA
* * * *
46787 TTGAATGTCCACCTTGAGAAACATGAA-GAAAAAGATATCCATTGACAAGAAAAGTCCGTATATA
1 TTGAATATCTACCTTGAGAAACGT-AATGAAAAAGATATCCATTGGCAAGAAAAGTCC-TATATA
*
46851 GTAACCCATGCCTTCAGAAGTCTTATTACTCTCTTTAAATGATTTTATAACCTCATAATTGAGTT
64 GTAACCCATGCCTTC-GAAGTCTTATTACTCACTTTAAATGATTTTATAACCTCATAATT-AGTT
* *********
46916 TT-ATTTAAATATTTTTATATTTTTATTAAAAANNNNNNNNN
127 TTGATTTAAATATTTTTATA-TTTTATCAAAAAATATTATTT
* * *
46957 NTGAATATCTATCTTGAGAAACGTAATGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATAG
1 TTGAATATCTACCTTGAGAAACGTAATGAAAAAGATATCCATTGGCAAGAAAAGTCC-TATATAG
** * * * **
47022 TCGCCAATGCCTTCGAACG-CTTTATTACTCGCTTTAAAT-AGTTTTTTAATTTCATAATTAGTT
65 TAACCCATGCCTTCGAA-GTC-TTATTACTCACTTTAAATGA-TTTTATAACCTCATAATTAGTT
* *
47085 TTGATTTAGATTTTTTTATATTTTATCAAAAAATATTATTT
127 TTGATTTAAATATTTTTATATTTTATCAAAAAATATTATTT
* * * * * *
47126 TTGTATGTCTACCTTGAGAAACGTAATGAAAATGATAT-AATTTGGTAAGAAAAGT-CTATTTAT
1 TTGAATATCTACCTTGAGAAACGTAATGAAAAAGATATCCA-TTGGCAAGAAAAGTCCTATATA-
*
47189 GGACACCCATGCCTTCGAAAGT-TATATTACTCACTTTAAATGATTTTATAACCTCAT
64 GTA-ACCCATGCCTTCG-AAGTCT-TATTACTCACTTTAAATGATTTTATAACCTCAT
47246 NNNNNNNNNN
Statistics
Matches: 233, Mismatches: 44, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
167 4 0.02
168 4 0.02
169 109 0.47
170 116 0.50
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (167 bp):
TTGAATATCTACCTTGAGAAACGTAATGAAAAAGATATCCATTGGCAAGAAAAGTCCTATATAGT
AACCCATGCCTTCGAAGTCTTATTACTCACTTTAAATGATTTTATAACCTCATAATTAGTTTTGA
TTTAAATATTTTTATATTTTATCAAAAAATATTATTT
Found at i:47774 original size:170 final size:170
Alignment explanation
Indices: 47377--47979 Score: 486
Period size: 170 Copynumber: 3.5 Consensus size: 170
47367 NNNNNNNNNG
* * * * * *
47377 AATGTCTACCTCAAGAAACGTGAAGAAAAAGATATTCATTAGTAAGAAAAGTCCTTTTATAGTCA
1 AATGTCTACCTCGAGAAACATGAAGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATAGTCA
* * * **********
47442 CCCATGCGTTCAAAAGCCTTATTACTCGCTTTAAATGGTTTNNNNNNNNNNTAATT-AGTTTTAA
66 CCCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGATTTTATAACATCATAATTGA-TTTTAA
* * * *
47506 GTTGAACTTTTTTTACATTTTTTATTAAAA-TAGATTATAATTG
130 GTTGAA-TGTTTTTATATTTTTTA-TAAAACAAG-TTATAATTA
* * * * * * * *
47549 AATGTTTGCCTC-AAAAAGCGTAAAGAAAATA-ATATTCGTTGGCAAAAAAAGTCCATTTATAGT
1 AATGTCTACCTCGAGAAA-CATGAAGAAAA-AGATATCCATTGGCAAGAAAAGTCCATTTATAGT
* ********** *
47612 CACCCATGCCTTC-AGAAGGCTTATTACTCGNNNNNNNNNNTTTTATAACCTCATAATTGATTTT
64 CACCCATGCCTTCGA-AAGCCTTATTACTCGCTTTAAATGATTTTATAACATCATAATTGATTTT
* * *
47676 AATTTGAATGTTTTTATA-TTTTTATGAAAATATA-TTATAATTG
128 AAGTTGAATGTTTTTATATTTTTTAT-AAAACA-AGTTATAATTA
* ** *
47719 AGTGTCTACCAT-GAGAAATGTGGAA-AAAATGATATCCATTGGCAAGAAAAGTCCATTTATAGT
1 AATGTCTACC-TCGAGAAACAT-GAAGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATAGT
* * * * *
47782 CAACCATACCTTCGAAAACCTTAATACTTGCTTTAAATGATTTTATAACATCATAATTGATTTTA
64 CACCCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGATTTTATAACATCATAATTGATTTTA
*
47847 AGTTGAATGTTTTTATATTTTTTATAAAGCAAGTTATAATTA
129 AGTTGAATGTTTTTATATTTTTTATAAAACAAGTTATAATTA
* * * * *
47889 AATGTCTACCTCGAGAAACATGAAGAAAAAGATGTCTATTGACAAGAAAAGTCCATATATAGTAA
1 AATGTCTACCTCGAGAAACATGAAGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATAGTCA
*
47954 CCCATGCCTACGAAAGCCTTATTACT
66 CCCATGCCTTCGAAAGCCTTATTACT
47980 NNNNNNNNNN
Statistics
Matches: 335, Mismatches: 80, Indels: 34
0.75 0.18 0.08
Matches are distributed among these distances:
169 6 0.02
170 206 0.61
171 28 0.08
172 93 0.28
173 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.35
Consensus pattern (170 bp):
AATGTCTACCTCGAGAAACATGAAGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATAGTCA
CCCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATGATTTTATAACATCATAATTGATTTTAAG
TTGAATGTTTTTATATTTTTTATAAAACAAGTTATAATTA
Found at i:49763 original size:16 final size:15
Alignment explanation
Indices: 49742--49790 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 15
49732 CTCGCTTGAA
49742 ATAATTTTTTAATTT
1 ATAATTTTTTAATTT
49757 CATAATTGGTTTTAATTT
1 -ATAATT--TTTTAATTT
*
49775 ATATTTTTTTATATTT
1 ATAATTTTTTA-ATTT
49791 TTATTAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 5 0.17
16 10 0.34
17 5 0.17
18 9 0.31
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (15 bp):
ATAATTTTTTAATTT
Found at i:53547 original size:168 final size:168
Alignment explanation
Indices: 53153--53867 Score: 729
Period size: 169 Copynumber: 4.2 Consensus size: 168
53143 NNNNNNNNNN
* * * * *
53153 ATTGAATGTCTACCTCGAGAAACATGAAGAAAAAGATATCCATTGGTAAGAAAAATGCATTTATA
1 ATTGAATGTCTACCTCGAGAAACGTAAAGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATA
* * * * * * *
53218 ATCACCCATACTTTCGAAAACCTTATTATTTACTTTAAATGATTTTATAACCTCACAATTAATTT
66 GTCACCCATACCTTCGAAAGCCTTATTACTCACTTTAAATGATTTTATAACCTCATAATTGATTT
* * * *
53283 TAAGCTGAATTTTTTTATATCTTTTA-TAAAGCAGGTTATA
131 TAA-TTTAATTTTTTTATAT-TTTTATTAAA-AAGATTATA
* * * * * * * * *
53323 ATTGAATGTCTGCCTCAAGAAACATGAAGAAAACGATGTCCATTGACAACAAAAGTCCATATATA
1 ATTGAATGTCTACCTCGAGAAACGTAAAGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATA
* * * * *
53388 GTAACCCATTCCTTCGCAAGCCTTGTTACTCGCTTTAAATGATTTTATAACCTCATAATTGATTT
66 GTCACCCATACCTTCGAAAGCCTTATTACTCACTTTAAATGATTTTATAACCTCATAATTGATTT
*
53453 TAATTTAA-TTTTTTATATTTTTATTAGAAAATATTATA
131 TAATTTAATTTTTTTATATTTTTATTA-AAAAGATTATA
* *
53491 ATTGAATATCTATCTCGAGAAACGTAAAGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATA
1 ATTGAATGTCTACCTCGAGAAACGTAAAGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATA
* * * * * * * ** * *
53556 GTCACACATGCCTTCGAACGCCTTATTGCTCGCTTTAAATGGTTTTTTAATTTTATAATTGGTTT
66 GTCACCCATACCTTCGAAAGCCTTATTACTCACTTTAAATGATTTTATAACCTCATAATTGATTT
* * * * *
53621 TAGTTTCGA-TTTTTTATATTTTTATTAAAAAATATTTTT
131 TAATTT-AATTTTTTTATATTTTTATT-AAAAAGATTATA
* * * * * * * *
53660 TTTGAATGTCTACTTCGAGAAATGTAATGAAAAAGATATCCTTTAGCAAGAAAAGTCTATTTATG
1 ATTGAATGTCTACCTCGAGAAACGTAAAGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATA
* *** * *
53725 GCCACCCATACCTTCGAAAGTGATATTATTCACTTTAAATAATTTTATAACCTCATAATTGATTT
66 GTCACCCATACCTTCGAAAGCCTTATTACTCACTTTAAATGATTTTATAACCTCATAATTGATTT
*
53790 TAATATAAATTTTTTTATATTTTT-TTAAAATAGATTATA
131 TAAT-TTAATTTTTTTATATTTTTATTAAAA-AGATTATA
*
53829 ATTGAATGTCTACCTCAAGAAACGTGAAA-AAAAAGATAT
1 ATTGAATGTCTACCTCGAGAAACGT-AAAGAAAAAGATAT
53868 NNNNNNNNNN
Statistics
Matches: 444, Mismatches: 93, Indels: 17
0.80 0.17 0.03
Matches are distributed among these distances:
167 5 0.01
168 133 0.30
169 177 0.40
170 129 0.29
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (168 bp):
ATTGAATGTCTACCTCGAGAAACGTAAAGAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATA
GTCACCCATACCTTCGAAAGCCTTATTACTCACTTTAAATGATTTTATAACCTCATAATTGATTT
TAATTTAATTTTTTTATATTTTTATTAAAAAGATTATA
Found at i:58384 original size:171 final size:169
Alignment explanation
Indices: 58083--59045 Score: 639
Period size: 171 Copynumber: 5.7 Consensus size: 169
58073 TTTTTGAGGT
* * * * *
58083 AGACAATCAATTATAATCTATTTTAATAAAAAAT-ATTAAAAAGTTCAACTTAAAA-CTAGTTAT
1 AGACATTCAATTATAATCTGTTTTAATAAAAAATGA--AAAAAATTTAACTTAAAATC-AATTAT
* * * * *
58146 GA-GATTA-AAAAACTATTTCAA-GCGAGTAATAAGGCTGTCGAAGGCAAGGGTGACCATAAAAG
63 GACG-TTAGAAAATC-ATTT-AAGGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATG
*
58208 GACTTTTCTTCCCAATGGATATCTTTTTCTTCACGTATTTCAATGC
125 GACTTTTCTTGCCAATGGATATCTTTTTCTTCACGTATTTC-ATGC
58254 AGACATTCAATTATAATCTGTTTTAATAAAAAATGAAAAGAAATTTAACTTAAAATCAATTATGA
1 AGACATTCAATTATAATCTGTTTTAATAAAAAATGAAAA-AAATTTAACTTAAAATCAATTATGA
* *** * *
58319 CGTTAGGAAATCATTTATTTCGAGTAATAAGGCTTTCGAAGGTATGGGTGTCTATAAATGGACTT
65 CGTTAGAAAATCATTTAAGGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTT
* * * * *
58384 TTCTTGCCAACGAATATCTTTTTCTTCA--TGTTTCTTGNNNN
130 TTCTTGCCAATGGATATCTTTTTCTTCACGTATTTCATG---C
****** * * * *
58425 NNNNNNTCAATTATAATCTGTTTTAATAAAAAATATAAAAAAAATTAAATTAAAATAAATTATGA
1 AGACATTCAATTATAATCTGTTTTAATAAAAAAT-GAAAAAAATTTAACTTAAAATCAATTATGA
* * * * *
58490 TGTTATAAAATTATTTAAGGCGAGTAATAAAGCTTTCAAAGGCATGGGTGACTATAAATGGACTT
65 CGTTAGAAAATCATTTAAGGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTT
* * * * * *
58555 CTCCTGCCAATGGATAT-TATTTTCTTTACGTTTTTTGAGGC
130 TTCTTGCCAATGGATATCT-TTTTCTTCACG-TATTTCATGC
* * * *
58596 AGACATTCAATTATAATCTATTTTCATAAAAAATGGAAAAAAGTTCAACTTAAAA-CTAATTATG
1 AGACATTCAATTATAATCTGTTTTAATAAAAAAT-GAAAAAAATTTAACTTAAAATC-AATTATG
********** * * *
58660 A-GATNNNNNNNNNNTTTAAGGCAAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAAAT-GA
64 ACG-TTAGAAAATCATTTAAGGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTAT-AAATGGA
* * * *********
58723 CTTTTCTTGCCAATGAATCTCTTTTTCTTCATGTNNNNNNNNNN
127 CTTTTCTTGCCAATGGATATCTTTTTCTTCACGT-ATTTCATGC
* *
58767 AGACATTCAATTATAATCTATTTTAATAAAAAAT-ATGAAAAAA-TTAAATTAAAATCAATTATG
1 AGACATTCAATTATAATCTGTTTTAATAAAAAATGA--AAAAAATTTAACTTAAAATCAATTATG
* * * * * * * * **
58830 AGGTTATAAAATCATTCAAAGTGAGTAATATA-ACTTTTGAAGGCATGGGTGACCATAAATAAAC
64 ACGTTAGAAAATCATTTAAGGCGAGTAATA-AGGCTTTCGAAGGCATGGGTGACTATAAATGGAC
* * * * * *
58894 TTTTTTTGCCAAAGGATATCTTTTTCATAACGT-TTCTCAAGGT
128 TTTTCTTGCCAATGGATATCTTTTTCTTCACGTATT-TC-ATGC
* ** * ** *
58937 AGACATTTAAAAATAATAT-TTTTAATAAAAATAT-AAAAAAATCCAAATTAAAA-CGAATTATG
1 AGACATTCAATTATAATCTGTTTTAATAAAAA-ATGAAAAAAATTTAACTTAAAATC-AATTATG
** * * * *
58999 AAATTAAAAAACCATTTAAAGCGAGTAATAAGGCGTTCGAAGGCATG
64 ACGTTAGAAAATCATTTAAGGCGAGTAATAAGGCTTTCGAAGGCATG
59046 NNNNNNNNNN
Statistics
Matches: 612, Mismatches: 149, Indels: 64
0.74 0.18 0.08
Matches are distributed among these distances:
168 10 0.02
169 74 0.12
170 104 0.17
171 403 0.66
172 16 0.03
174 5 0.01
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.34
Consensus pattern (169 bp):
AGACATTCAATTATAATCTGTTTTAATAAAAAATGAAAAAAATTTAACTTAAAATCAATTATGAC
GTTAGAAAATCATTTAAGGCGAGTAATAAGGCTTTCGAAGGCATGGGTGACTATAAATGGACTTT
TCTTGCCAATGGATATCTTTTTCTTCACGTATTTCATGC
Found at i:58718 original size:342 final size:334
Alignment explanation
Indices: 58083--59044 Score: 812
Period size: 342 Copynumber: 2.8 Consensus size: 334
58073 TTTTTGAGGT
* * * * *
58083 AGACAATCAATTATAATCTATTTTAATAAAAAATATTAAAAAGTTCAACTTAAAACTAGTTATGA
1 AGACATTCAATTATAATCTATTTTAATAAAAAATATAAAAAAATT-AAATTAAAA-TAATTATGA
* * * * * *
58148 GATTAAAAAACTATTTCAAGCGAGTAATAAGGCTGTCGAAGGCAAGGGTGACCATAAAAGGACTT
64 G-TTATAAAATTATTT-AAGCGAGTAATAAAGCTTTCGAAGGCATGGGTGACCATAAATGGACTT
* * * *
58213 TTCTTCCCAATGGATATCTTTTTCTTCACGTATTTCAATGCAGACATTCAATTATAATCTGTTTT
127 CTCCTCCCAATGGATATCTTTTTCTTCACGTATTTCAAGGCAGACATTCAATTATAATCTATTTT
* *** *
58278 AATAAAAAATGAAAAGAAATTTAACTTAAAATCAATTATGACGTTAGGAAATCATTTATTTCGAG
192 AATAAAAAATGAAAAGAAATTCAACTTAAAATCAATTATGACGTTAGGAAATCATTTAAGGCAAG
* * *
58343 TAATAAGGCTTTCGAAGGTATGGGTGTCTAT-AAATGGACTTTTCTTGCCAACGAATATCTTTTT
257 TAATAAGGCTTTCGAAGGCATAGGTGACTATAAAAT-GACTTTTCTTGCCAACGAATATCTTTTT
58407 CTTCATGTTTCTTG
321 CTTCATGTTTCTTG
****** *
58421 NNNNNNNNNNTCAATTATAATCTGTTTTAATAAAAAATATAAAAAAAATTAAATTAAAATAAATT
1 ----AGACATTCAATTATAATCTATTTTAATAAAAAATAT-AAAAAAATTAAATTAAAAT-AATT
* *
58486 ATGATGTTATAAAATTATTTAAGGCGAGTAATAAAGCTTTCAAAGGCATGGGTGACTATAAATGG
60 ATGA-GTTATAAAATTATTTAA-GCGAGTAATAAAGCTTTCGAAGGCATGGGTGACCATAAATGG
* * * **
58551 ACTTCTCCTGCCAATGGATAT-TATTTTCTTTACGTTTTTTGAGGCAGACATTCAATTATAATCT
123 ACTTCTCCTCCCAATGGATATCT-TTTTCTTCACGTATTTCAAGGCAGACATTCAATTATAATCT
* * **********
58615 ATTTTCATAAAAAATGGAAAA-AAGTTCAACTTAAAA-CTAATTATGA-GATNNNNNNNNNNTTT
187 ATTTTAATAAAAAAT-GAAAAGAAATTCAACTTAAAATC-AATTATGACG-TTAGGAAATCATTT
* * *
58677 AAGGCAAGTAATAAGGCTTTTGAAGGCATAGGTGACTATAAAATGACTTTTCTTGCCAATGAATC
249 AAGGCAAGTAATAAGGCTTTCGAAGGCATAGGTGACTATAAAATGACTTTTCTTGCCAACGAATA
******
58742 TCTTTTTCTTCATGTNNNNNNNNNN
314 TCTTTTTCTTCATGT----TTCTTG
*
58767 AGACATTCAATTATAATCTATTTTAATAAAAAATATGAAAAAATTAAATTAAAATCAATTATGAG
1 AGACATTCAATTATAATCTATTTTAATAAAAAATATAAAAAAATTAAATTAAAAT-AATTATGA-
* * * * **
58832 GTTATAAAATCATTCAAAGTGAGTAATATAA-CTTTTGAAGGCATGGGTGACCATAAATAAACTT
64 GTTATAAAATTATT-TAAGCGAGTAATA-AAGCTTTCGAAGGCATGGGTGACCATAAATGGACTT
* ** * * * * * * ** *
58896 TTTTTGCCAAAGGATATCTTTTTCATAACGT-TTCTCAAGGTAGACATTTAAAAATAATAT-TTT
127 CTCCTCCCAATGGATATCTTTTTCTTCACGTATT-TCAAGGCAGACATTCAATTATAATCTATTT
* * ** ** * *
58959 TAATAAAAATAT-AAAA-AAATCCAAATTAAAA-CGAATTATGAAATTAAAAAACCATTTAAAGC
191 TAATAAAAA-ATGAAAAGAAATTCAACTTAAAATC-AATTATGACGTTAGGAAATCATTTAAGGC
* *
59021 GAGTAATAAGGCGTTCGAAGGCAT
254 AAGTAATAAGGCTTTCGAAGGCAT
59045 GNNNNNNNNN
Statistics
Matches: 493, Mismatches: 108, Indels: 41
0.77 0.17 0.06
Matches are distributed among these distances:
339 54 0.11
340 13 0.03
341 126 0.26
342 283 0.57
343 17 0.03
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.34
Consensus pattern (334 bp):
AGACATTCAATTATAATCTATTTTAATAAAAAATATAAAAAAATTAAATTAAAATAATTATGAGT
TATAAAATTATTTAAGCGAGTAATAAAGCTTTCGAAGGCATGGGTGACCATAAATGGACTTCTCC
TCCCAATGGATATCTTTTTCTTCACGTATTTCAAGGCAGACATTCAATTATAATCTATTTTAATA
AAAAATGAAAAGAAATTCAACTTAAAATCAATTATGACGTTAGGAAATCATTTAAGGCAAGTAAT
AAGGCTTTCGAAGGCATAGGTGACTATAAAATGACTTTTCTTGCCAACGAATATCTTTTTCTTCA
TGTTTCTTG
Found at i:61290 original size:171 final size:169
Alignment explanation
Indices: 60244--61923 Score: 781
Period size: 171 Copynumber: 9.9 Consensus size: 169
60234 NNTGTGTAAT
* * * * **
60244 CTCAAAATTGGTTTTAAGTTGAATTTTTTTATATTTTTTATTAAAATATTTTATAATTGAATGTC
1 CTCATAATTGATTTTAAGTTGAACTTTTTTACATTTTTTATTAAAATAGATTATAATTGAATGTC
* * * * * *
60309 TACCTCGAGAAATGTGGAGAAAA-AGTATCCAGTGGCAAGAAAAGTCCATTTATAGTCACTCATG
66 TACCTC-AAAAACGTGAAGAAAATAATATCCATTGGCAAGAAAAGTCCATTTATAGTCACCCATG
* * *
60373 CCTTCGAAAA-CCTTATTAATCGCTTTAAATGATTTTATAA
130 CCTTC-AAAAGCCTTATTACTCGCCTTAAATAATTTTATAA
* * * * ** ********** *
60413 CCTCATAATTAATTTTTATTTGAATTTTTTTATGTTTTTTNNNNNNNNNNATTATAATTGATTGT
1 -CTCATAATTGATTTTAAGTTGAACTTTTTTACATTTTTTATTAAAATAGATTATAATTGAATGT
* * * * * * * * * *
60478 CTGCCTTAAGAAACAT-AA-AAAAAAGATATGCATTGGCGAGAACAGTTCATTTATAGTAACTCA
65 CTACCTCAA-AAACGTGAAGAAAATA-ATATCCATTGGCAAGAAAAGTCCATTTATAGTCACCCA
* * *
60541 TGCCTTCGAAAGCCTTATTACTCGCTTTAAATGATTTTATAA
128 TGCCTTCAAAAGCCTTATTACTCGCCTTAAATAATTTTATAA
***************** * *
60583 CCTCAT-ANNNNNNNNNNNNNNNNNTTTTATAATATTTTTTATTAAAATAGATTATAATTGAATG
1 -CTCATAATTGATTTTAAGTTGAACTTTT-TTACATTTTTTATTAAAATAGATTATAATTGAATG
* * * * * * * *
60647 CCTATCTCAAAAAATGTGAAGAAAA-ACATAACCATTGACAAGAAAAATCCATATATAGTAACCC
64 TCTACCTC-AAAAACGTGAAGAAAATA-ATATCCATTGGCAAGAAAAGTCCATTTATAGTCACCC
* * * * * ** *
60711 TTACCTTCGAAAGCTTTATTACTCGCTTTAAATGGTTTTTTAA
127 ATGCCTTCAAAAGCCTTATTACTCGCCTTAAATAATTTTATAA
* ** * * * * * * * ****
60754 TTTCATAATTGGCTTTAATTTGTATTTTTTTATA-TTTTTATAAAAAAATATTAT--TTNNNNNN
1 -CTCATAATTGATTTTAAGTTGAACTTTTTTACATTTTTTATTAAAATAGATTATAATT--GAAT
**** * * *
60816 NNNNACCTCGAGAAACGT-AATGAAAA-AGATATCC-TTCGGCAAAAAAAGTCTATTTATAGTCA
63 GTCTACCTC-AAAAACGTGAA-GAAAATA-ATATCCATT-GGCAAGAAAAGTCCATTTATAGTCA
* * * * *
60878 CCTATGCCTTC-AAAG-TTATATTACTCACTTTAAAGAATTTTATAA
124 CCCATGCCTTCAAAAGCCT-TATTACTCGCCTTAAATAATTTTATAA
********** * *
60923 CCTCATAATTGATTTT-ANNNNNNNNNNTTTATATTTTTTATTAAAATAGATTATAATTAAATGT
1 -CTCATAATTGATTTTAAGTTGAACTTTTTTACATTTTTTATTAAAATAGATTATAATTGAATGT
* * * **
60987 CTACCTCAAGAAACATGAAGAAAA-AGAGATTCATTGGCAAGAAAAGTCGTTTTATAGTCACCCA
65 CTACCTCAA-AAACGTGAAGAAAATA-ATATCCATTGGCAAGAAAAGTCCATTTATAGTCACCCA
* ** ****
61051 TGCCTTCAAAAGCCTTATTACTTGCCTTAAATGGTTTTNNNNN
128 TGCCTTCAAAAGCCTTATTACTCGCCTTAAATAATTTT-ATAA
***** *
61094 NNNNNAATT-AGTTTTAAGTTGAACTTTTTTACATTTTTTATTAAAATAGATTATAATTAAATGT
1 CTCATAATTGA-TTTTAAGTTGAACTTTTTTACATTTTTTATTAAAATAGATTATAATTGAATGT
* * * *
61158 CTGCCTCAAAAAGCGTAAAGAAAATAATATCCATTGGCAGGAGAAGTCCATTTATAGTCACCCAT
65 CTACCTCAAAAA-CGTGAAGAAAATAATATCCATTGGCAAGAAAAGTCCATTTATAGTCACCCAT
** **
61223 AACTTTTAAAGCCTTATTACTCGCCTTAAATAATTTTATAA
129 GCCTTCAAAAGCCTTATTACTCGCCTTAAATAATTTTATAA
* * *
61264 CATCATAATTGATTTTAA-TATGAACTTTTTTTATATTTTTCATTAAAACAGATTATAATTGAAT
1 C-TCATAATTGATTTTAAGT-TGAAC-TTTTTTACATTTTTTATTAAAATAGATTATAATTGAAT
* ********** *
61328 GTCTACCTTAAGAAACGTGAAGAAAA-AGANNNNNNNNNNCAAGAAAAGTCCATTTATAGTCACT
63 GTCTACCTCAA-AAACGTGAAGAAAATA-ATATCCATTGGCAAGAAAAGTCCATTTATAGTCACC
** *
61392 CATGCCTTCAAAAGCCTTATTACTCGAATTAAA-AGATTTCATAA
126 CATGCCTTCAAAAGCCTTATTACTCGCCTTAAATA-ATTTTATAA
* * * * *
61436 CCTCTTAATTGATCTTAGGTTGAA-TTTCTTTACATTTTTTATGAAAACAGATTATAATTGAATG
1 -CTCATAATTGATTTTAAGTTGAACTTT-TTTACATTTTTTATTAAAATAGATTATAATTGAATG
* * * * * *
61500 TCTACATCGAAAAACATGAAGAAAATGATATCCATTGGGAAGAAAAGTCCTTTTATGGTCACCCA
64 TCTACCTC-AAAAACGTGAAGAAAATAATATCCATTGGCAAGAAAAGTCCATTTATAGTCACCCA
******* *
61565 TGCCTT-AGAAAGCCTTATTACTCG-CTNNNNNNNNNNTTTTA-AT
128 TGCCTTCA-AAAGCCTTATTACTCGCCT---TAAATAATTTTATAA
* * * *
61608 CCCATAATTCG-TTTTAAGTTGAACTTTTTAACATTTTTTTTCTAAAATAGATTATAATTGATTG
1 CTCATAATT-GATTTTAAGTTGAACTTTTTTACATTTTTTAT-TAAAATAGATTATAATTGAATG
* ** * ** * *
61672 TCTGCCTCAAAAAAATGTAA-AGAAATTATATCCATTGATAAGAGAAGTCCATTTATAGTTACCC
64 TCTACCTCAAAAACGTG-AAGA-AAATAATATCCATTGGCAAGAAAAGTCCATTTATAGTCACCC
* ************* **
61736 ATGCCTTCGAAAGCCTTNNNNNNNNNNNNNAATGCTTTTATAA
127 ATGCCTTCAAAAGCCTTATTACTCGCCTTAAATAATTTTATAA
* ** * *
61779 CCTCATAATTGATTTGAAGTTGAGTTTTTTTATATTTTTT-TTAAAAATAGATTATAATTGAATA
1 -CTCATAATTGATTTTAAGTTGAACTTTTTTACATTTTTTATT-AAAATAGATTATAATTGAATG
* * * *
61843 TCTAGCTTAAGAAACATGAA-AAAA-AATTATCCATTGGCAAGAAAAGTCCATTTATAGTCACTC
64 TCTACCTCAA-AAACGTGAAGAAAATAA-TATCCATTGGCAAGAAAAGTCCATTTATAGTCACCC
* *
61906 ATGCCTTCGAAAGTCTTA
127 ATGCCTTCAAAAGCCTTA
61924 NNNNNNNNNN
Statistics
Matches: 1117, Mismatches: 336, Indels: 114
0.71 0.21 0.07
Matches are distributed among these distances:
168 16 0.01
169 125 0.11
170 323 0.29
171 384 0.34
172 260 0.23
173 9 0.01
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.36
Consensus pattern (169 bp):
CTCATAATTGATTTTAAGTTGAACTTTTTTACATTTTTTATTAAAATAGATTATAATTGAATGTC
TACCTCAAAAACGTGAAGAAAATAATATCCATTGGCAAGAAAAGTCCATTTATAGTCACCCATGC
CTTCAAAAGCCTTATTACTCGCCTTAAATAATTTTATAA
Found at i:61788 original size:172 final size:157
Alignment explanation
Indices: 61610--61923 Score: 283
Period size: 170 Copynumber: 1.9 Consensus size: 157
61600 NTTTTAATCC
* * * *
61610 CATAATTCG-TTTTAAGTTGAACTTTTTAACATTTTTTTTCTAAAATAGATTATAATTGATTGTC
1 CATAATT-GATTTGAAGTTGAACTTTTTAACATTTTTTTT-AAAAATAGATTATAATTGAATATC
* * * * *
61674 T-GCCTCAA-AAAAATGTAAAGAAATTATATCCATTGATAAGAGAAGTCCATTTATAGTTACCCA
64 TAG-CTCAAGAAAAATG-AAAAAAAAT-TATCCATTGACAAGAAAAGTCCATTTATAGTCACCCA
61737 TGCCTTCGAAAGCCTTNNNNNNNNNNNNNAATGCTTTTATAACCT
126 TGCCTTCGAAAGCCTT-------------AATGCTTTTATAACCT
** * *
61782 CATAATTGATTTGAAGTTGAGTTTTTTTATATTTTTTTTAAAAATAGATTATAATTGAATATCTA
1 CATAATTGATTTGAAGTTGAACTTTTTAACATTTTTTTTAAAAATAGATTATAATTGAATATCTA
* * * *
61847 GCTTAAGAAACATGAAAAAAAATTATCCATTGGCAAGAAAAGTCCATTTATAGTCACTCATGCCT
66 GCTCAAGAAAAATGAAAAAAAATTATCCATTGACAAGAAAAGTCCATTTATAGTCACCCATGCCT
*
61912 TCGAAAGTCTTA
131 TCGAAAGCCTTA
61924 NNNNNNNNNN
Statistics
Matches: 121, Mismatches: 18, Indels: 21
0.76 0.11 0.13
Matches are distributed among these distances:
157 1 0.01
170 47 0.39
171 34 0.28
172 39 0.32
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.37
Consensus pattern (157 bp):
CATAATTGATTTGAAGTTGAACTTTTTAACATTTTTTTTAAAAATAGATTATAATTGAATATCTA
GCTCAAGAAAAATGAAAAAAAATTATCCATTGACAAGAAAAGTCCATTTATAGTCACCCATGCCT
TCGAAAGCCTTAATGCTTTTATAACCT
Found at i:72042 original size:171 final size:169
Alignment explanation
Indices: 71610--72325 Score: 542
Period size: 171 Copynumber: 4.2 Consensus size: 169
71600 NNNNNNNNNN
* * * * * *
71610 AATTGATTTTAAGTTGAATTTTTTTACATTTTTTATTACAACAGATTATAATTGAATGTCTACAT
1 AATTGATTTTAAGTTGAATTTTTTAATATTTTTTATTAAAATAGATTATAATTGAATATCTACCT
* * * * * * * * * *
71675 TGACAAACGTGAAGAAAAATATATTCATTGGCAGGAAAAGTCCTTTTATAGTCACCCATGCCTTT
66 CG--AAACATGAAAAAAAAGATATCCATTGACAAGAAAAGTCCATTTATAGTCACCCATACCTTC
* * * *
71740 GAAAGCTTTATTACTCGC-TCGAAATGGTTTT-TTACTCTCAT
129 GAAAGCCTTATTACTCGCAT-TAAATGATTTTATAAC-CTCAT
********** * * *
71781 AATT-AGTTTTAAGTTNNNNNNNNNNACATTTTTTATTAAAATAGATTATAATTGATTGTCTACC
1 AATTGA-TTTTAAGTTGAATTTTTTAATATTTTTTATTAAAATAGATTATAATTGAATATCTACC
* * * * * * * ** *
71845 TATC-AAAAATGTCAAGAAATGATATCCATTGATAAGAGACGTCCATTTATAGTTTCCCATGCCT
65 --TCGAAACATG-AAAAAAAAGATATCCATTGACAAGAAAAGTCCATTTATAGTCACCCATACCT
* * * *
71909 TTGAAAGCCGTATTACTCGCCTTAAATGCTTTTATAACCTCAT
127 TCGAAAGCCTTATTACTCGCATTAAATGATTTTATAACCTCAT
* * *
71952 AAATGATTTTCAGTT-AAGTTTTTTAATATTTTTTATTAAAATAGATTATAATTAAATATCTACC
1 AATTGATTTTAAGTTGAA-TTTTTTAATATTTTTTATTAAAATAGATTATAATTGAATATCTACC
* * ********** *
72016 TCGAGAAGCATGAAAAAAAAGATATCCATTGGCAAGAAAAGTCTANNNNNNNNNNCCTATACCTT
65 TCGA-AA-CATGAAAAAAAAGATATCCATTGACAAGAAAAGTCCATTTATAGTCACCCATACCTT
* * *
72081 CGAAAGCCTTATTACTCGAATGAAATGATTTCATAACCTCAT
128 CGAAAGCCTTATTACTCGCATTAAATGATTTTATAACCTCAT
* * * *
72123 AATTGATTTTAAGTTGAATTTTTTAAGATTTTTTATTAAAACAGATTATAATTGAATATCTGCAT
1 AATTGATTTTAAGTTGAATTTTTTAATATTTTTTATTAAAATAGATTATAATTGAATATCTACCT
* * *
72188 CGAAAAACGTGAAAAAAAATATATCCATTGACAAGAAAAGTCCTTTTATAGTCACCCATACCTTC
66 CG--AAACATGAAAAAAAAGATATCCATTGACAAGAAAAGTCCATTTATAGTCACCCATACCTTC
* * * * * * *
72253 GGAAGGCTTATTAGTCGCTTTAAATAATTTTATAATCTTAT
129 GAAAGCCTTATTACTCGCATTAAATGATTTTATAACCTCAT
* *
72294 AATTGATTTTAATTTGAATTTTTTTATATTTT
1 AATTGATTTTAAGTTGAATTTTTTAATATTTT
72326 NNNNNNNNNN
Statistics
Matches: 416, Mismatches: 115, Indels: 28
0.74 0.21 0.05
Matches are distributed among these distances:
169 2 0.00
170 7 0.02
171 393 0.94
172 12 0.03
173 2 0.00
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.38
Consensus pattern (169 bp):
AATTGATTTTAAGTTGAATTTTTTAATATTTTTTATTAAAATAGATTATAATTGAATATCTACCT
CGAAACATGAAAAAAAAGATATCCATTGACAAGAAAAGTCCATTTATAGTCACCCATACCTTCGA
AAGCCTTATTACTCGCATTAAATGATTTTATAACCTCAT
Found at i:74876 original size:172 final size:170
Alignment explanation
Indices: 74570--75011 Score: 480
Period size: 172 Copynumber: 2.6 Consensus size: 170
74560 NNNNNNTTGA
* * * *
74570 TTTTAATTTAATTTTTTT-TATATTTTTATTAAAATATATTATAATTGAATATCTATCTTGAGAA
1 TTTTAATTGAATTTTTTTATATATTTTT-TTAAAATATATTATAATTGAATGTCTACCTCGAGAA
********** *
74634 ACATAAAAAAAAAGATATCCATAGGCAAGAAAAGTCCATTTATAGTNNNNNNNNNNTTCGAACGC
65 ACATAAAAAAAAAGATATCCATAGGCAAGAAAAGTCCATTTATAGTCACCCATGCATTCGAACAC
74699 CTTATTACTCGCTATAAATGGTTTTTTAATCTCATAATTGG
130 CTTATTACTCGCTATAAATGGTTTTTTAATCTCATAATTGG
74740 TTTTAAGTTGAATTTTTTTATATATTTTTTTAAAATATATTATAATTGAATGTCTACCTCGAGAA
1 TTTTAA-TTGAATTTTTTTATATATTTTTTTAAAATATATTATAATTGAATGTCTACCTCGAGAA
*
74805 ACATGAAGAAAAAAA-ATATCCACT-GGCAAGAAAAGTCCATTTATAGTCACCCATGCATTTGAA
65 ACAT-AA-AAAAAAAGATATCCA-TAGGCAAGAAAAGTCCATTTATAGTCACCCATGCATTCGAA
* * *
74868 CACCTTATTATTCGCTTTAAATGGTTTTTTAATTTCATAATTGG
127 CACCTTATTACTCGCTATAAATGGTTTTTTAATCTCATAATTGG
* * * * ** * *
74912 TTTTTATTTGGATTTTTTTATAT-TTTTATTAGAAA-ATAATATTTTTGTATGTGTACCTCGAGA
1 -TTTTAATTGAATTTTTTTATATATTTTTTTA-AAATATATTATAATTGAATGTCTACCTCGAGA
* ** * * * *
74975 AACGTAATGAAAATGATATCCTTTGGTAAGAAAAGTC
64 AACATAAAAAAAAAGATATCCATAGGCAAGAAAAGTC
75012 NNNNNNNNNN
Statistics
Matches: 230, Mismatches: 33, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
169 5 0.02
170 26 0.11
171 82 0.36
172 104 0.45
173 13 0.06
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.41
Consensus pattern (170 bp):
TTTTAATTGAATTTTTTTATATATTTTTTTAAAATATATTATAATTGAATGTCTACCTCGAGAAA
CATAAAAAAAAAGATATCCATAGGCAAGAAAAGTCCATTTATAGTCACCCATGCATTCGAACACC
TTATTACTCGCTATAAATGGTTTTTTAATCTCATAATTGG
Found at i:75509 original size:171 final size:168
Alignment explanation
Indices: 75224--76216 Score: 631
Period size: 171 Copynumber: 5.8 Consensus size: 168
75214 NNNNNNNNNT
* * **
75224 TTAAATAGTTTTTTAATCTCATAATTAGTTTTAAGTTGAATTTTTTTGCATTTTTTATTCAAATA
1 TTAAATAATTTTATAATCTCATAATTA-TTTTAAGTTGAATTTTTTTATATTTTTTATTCAAATA
* * ** *
75289 GATTATAATTGAATGT-TTGCTTCAAAAAACGTAAAGAAAATAATATCCATTGATAAGAGAAGTC
65 GATTATAATTGAATGTCTT-CTT-AAGAAACGTGAAGAAAA-AATATCCATTGGCAAGAAAAGTC
** * * *
75353 CATTTATAGTTGCCCATGCCTTCGAAAGCCTTATTTCTCTCC
127 CATTTATAGTCACCCATGCCTTCGAAAGCCTTATTACTCGCA
* * *
75395 TTAAATAATTTTGTAATATCATAATTCATTTTAATTTGAATTTTTTTATATTTTTTATTCAAATA
1 TTAAATAATTTTATAATCTCATAATT-ATTTTAAGTTGAATTTTTTTATATTTTTTATTCAAATA
*
75460 GATTATAAGTGAATGTCTATCTTAAGAAACGTGAAGAAAAAGATATCCATTGGCAA-AAAATGTC
65 GATTATAATTGAATGTCT-TCTTAAGAAACGTGAAGAAAAA-ATATCCATTGGCAAGAAAA-GTC
* * *
75524 CATTTATAGTCAACCATACCTTCGAAAGCCTTATTACTCGAA
127 CATTTATAGTCACCCATGCCTTCGAAAGCCTTATTACTCGCA
* * * * * * * *
75566 TTAAATCATCTCATAACCTGATAATTGATTTTAAGTTGAATTTTTTTATATTTTATATTAAAACA
1 TTAAATAATTTTATAATCTCATAATT-ATTTTAAGTTGAATTTTTTTATATTTTTTATTCAAATA
* * * *
75631 TATTATAATTGAATGTCTGCATTGAGAAACATGAAGAAAAATATATCCATTGGCAAGAAAAGTCC
65 GATTATAATTGAATGTCTTC-TTAAGAAACGTGAAGAAAAA-ATATCCATTGGCAAGAAAAGTCC
* *
75696 ATTGATAGTCACCCATGCCTTCGGAAAG-CTTATTACTCGCT
128 ATTTATAGTCACCCATGCCTTC-GAAAGCCTTATTACTCGCA
* ********* * *
75737 TTAAATAATTTTATAACCNNNNNNNNNNTTTTAAGTTAAATTTTTTTATATTTTTTA-T-AAAGC
1 TTAAATAATTTTATAATC-TCATAATTATTTTAAGTTGAATTTTTTTATATTTTTTATTCAAA-T
* ** ** * * *
75800 AGGTTATAATTGAATGTCAACCTCGAGAAACCTGAAGAAAAAGATATCTATTGACAAGAAAAGTC
64 AGATTATAATTGAATGTC-TTCTTAAGAAACGTGAAGAAAAA-ATATCCATTGGCAAGAAAAGTC
* * ********** *
75865 CATATATAGTAANNNNNNNNNNCGAAAGCCTTATTACTCGCT
127 CATTTATAGTCACCCATGCCTTCGAAAGCCTTATTACTCGCA
** * * * * * * * * *
75907 TTAAATGGTTTTTTAATTTCATAATTGGTTTGAATTTGGATTTTTTAATA-TTTTTATTAAAAAA
1 TTAAATAATTTTATAATCTCATAATT-ATTTTAAGTTGAATTTTTTTATATTTTTTATTCAAATA
* ** *********** *
75971 TATTATTTTTGANNNNNNNNNNCGAGAAACGT-AATGAAAAAGATATCC-TTCAGCAAGAAAAGT
65 GATTATAATTGA-ATGTCTTCTTAAGAAACGTGAA-GAAAAA-ATATCCATT-GGCAAGAAAAGT
* ** * * * *
76034 CTATTTAT-GTCCACTGATGCCTTCGAAAG-TTATATTACCCACT
126 CCATTTATAGT-CACCCATGCCTTCGAAAGCCT-TATTACTCGCA
* * * * * * *
76077 TTAAATGATTTTATAACCTCATAACTGATTTTAATTTTATTTTTTTTATA-TTTTTATTAAAATA
1 TTAAATAATTTTATAATCTCATAA-TTATTTTAAGTTGAATTTTTTTATATTTTTTATTCAAATA
* * ** * * *
76141 GATTATAATTGAACGTCTACCGCAAGAAACATGAAGAAAAAGATATTCATTTGCAAGAAAAGTCC
65 GATTATAATTGAATGTCT-TCTTAAGAAACGTGAAGAAAAA-ATATCCATTGGCAAGAAAAGTCC
*
76206 TTTTATAGTCA
128 ATTTATAGTCA
76217 NNNNNNNNNN
Statistics
Matches: 635, Mismatches: 162, Indels: 51
0.75 0.19 0.06
Matches are distributed among these distances:
169 21 0.03
170 275 0.43
171 324 0.51
172 14 0.02
173 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.38
Consensus pattern (168 bp):
TTAAATAATTTTATAATCTCATAATTATTTTAAGTTGAATTTTTTTATATTTTTTATTCAAATAG
ATTATAATTGAATGTCTTCTTAAGAAACGTGAAGAAAAAATATCCATTGGCAAGAAAAGTCCATT
TATAGTCACCCATGCCTTCGAAAGCCTTATTACTCGCA
Found at i:76880 original size:171 final size:167
Alignment explanation
Indices: 76703--77520 Score: 594
Period size: 171 Copynumber: 4.8 Consensus size: 167
76693 NNNNNNNNNN
* * * * *
76703 TAAGTTGAATTTTTTTACATTTTTTATTAAAACATATTATAATTGAATGTTTACATCGAGAAACG
1 TAAGTTGAATTTTTTTACATTTTTTATTAAAACATATTATAATTGAATGTCTGCCTCAAAAAACG
*
76768 TGAAGAAAAAGATATCCATTGACAAGAAAAGTCCTTTTATAGTCACCCATGCCTTCGAAAGCCTT
66 TAAAG-AAAAGATATCCATTGACAAGAAAAGTCCTTTTATAGTCACCCATGCCTTCGAAAGCCTT
*
76833 ATTACTAGCTTGAAATTGTTTTTAAATCTCATAATTGGTTT
130 ATTACT-GCTTGAAA-TGTTTTT-AATCTCATAATTGATTT
* * *
76874 TAAGTTGAAATTTTTAATATTTTTT-TTAAAA-ATAGATTATAATT-AATTGTCTGCCTCAGAAA
1 TAAGTTGAATTTTTTTACATTTTTTATTAAAACAT--ATTATAATTGAA-TGTCTGCCTCA-AAA
* * * * * * *
76936 AATGTAAAGAAATGATATCCATTGATATGAGAAGTCCATTTATAGTCACCCATGCCTTCAAAAGC
62 AACGTAAAGAAAAGATATCCATTGACAAGAAAAGTCCTTTTATAGTCACCCATGCCTTCGAAAGC
****** *
77001 CTTATTACTNNNNNNNNNNAAT-TTTATAA-CATCATAATTGATTT
127 CTTATTACT----GCTTGAAATGTTTTTAATC-TCATAATTGATTT
* * * * * * * * *
77045 TAATTTGAATTTTTTTATATGTTATATTATAACAGATTATAAATGAATGTCTACCTCAAGAAACG
1 TAAGTTGAATTTTTTTACATTTTTTATTAAAACATATTATAATTGAATGTCTGCCTCAAAAAACG
********* * * * * *
77110 TNNNNNNNNNNATATCCATTGGCAAAAAAAGTCCATTTATAGTCACCGATACCTTCGAAAGCCTT
66 T-AAAGAAAAGATATCCATTGACAAGAAAAGTCCTTTTATAGTCACCCATGCCTTCGAAAGCCTT
* * * *
77175 ATTACTCGAATT-AAATGATTTCATAACCTAATAATTGATTT
130 ATTACT-G-CTTGAAATG-TTT-TTAATCTCATAATTGATTT
********** ** * *
77216 TAAGTTGAATTTTTTTNNNNNNNNNNTTAAAACCGATTATAATTGAATGTCTGCATTAAAAAACG
1 TAAGTTGAATTTTTTTACATTTTTTATTAAAACATATTATAATTGAATGTCTGCCTCAAAAAACG
** * * *
77281 TGCAGAAAAAGATATCCGTTGGCAAGAAAAGTCCTTTTATAGTCACCTATGCCTTCGAAAGCCTT
66 TAAAG-AAAAGATATCCATTGACAAGAAAAGTCCTTTTATAGTCACCCATGCCTTCGAAAGCCTT
*
77346 ATTACTGCTTGAAATGGTTTTTATTCTCATAATT-AGTTT
130 ATTACTGCTTGAAAT-GTTTTTAATCTCATAATTGA-TTT
* * * * *
77385 TAAGTTGAACTTTTTAACATTTTTTATTAAAATAGT-TTATAATT-AATTTTTTGCCTCAAAAAA
1 TAAGTTGAATTTTTTTACATTTTTTATTAAAACA-TATTATAATTGAA-TGTCTGCCTC-AAAAA
* * * * * *
77448 ATGTAAAGAAATGATATCCATTTATAAGAGAAGT-CTATTTATAGTCACACATGCCTTCGAAAGC
63 ACGTAAAGAAAAGATATCCATTGACAAGAAAAGTCCT-TTTATAGTCACCCATGCCTTCGAAAGC
*
77512 CTAATTACT
127 CTTATTACT
77521 CGCCTAAAAT
Statistics
Matches: 494, Mismatches: 128, Indels: 52
0.73 0.19 0.08
Matches are distributed among these distances:
168 8 0.02
169 104 0.21
170 36 0.07
171 321 0.65
172 21 0.04
173 2 0.00
174 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.37
Consensus pattern (167 bp):
TAAGTTGAATTTTTTTACATTTTTTATTAAAACATATTATAATTGAATGTCTGCCTCAAAAAACG
TAAAGAAAAGATATCCATTGACAAGAAAAGTCCTTTTATAGTCACCCATGCCTTCGAAAGCCTTA
TTACTGCTTGAAATGTTTTTAATCTCATAATTGATTT
Found at i:79302 original size:171 final size:168
Alignment explanation
Indices: 77766--79928 Score: 876
Period size: 171 Copynumber: 12.6 Consensus size: 168
77756 NNNNNNNNNN
* *
77766 TTTAAGTTAAATTTTTTTACATTTTTTATTAAAACAGATTATAATTGAATGTTTGCATCAAAAAA
1 TTTAAGTTAAA-TTTTTTACATTTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAAAA
* * * * *
77831 CTTGAAGAAAAATATATCCATTGGCAAGAAAACTCCTTTTATAGTCACCCATGCCTTCGAAATCC
65 CTTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCC
*
77896 TTATTACTCGCTTGAAATGGGTTTTTACTTTCATAATT-AGT
130 TTATTACTCGCTT-AAATGGTTTTTTAC-TTCATAATTGA-T
* * ******* * * * *
77937 TTTAAGTTGAACTTTTTA-ANNNNNNNNNNTTAAAATAGATTATAATTGATTGTCTGGCTGAAAA
1 TTTAAGTTAAATTTTTTACA---TTTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAA
* * * * * * *
78001 TAA-TGTAAAG-AAATGATATCCATTGATAAGAGAAGTCCATTTATAGTTACCCATACCTTTGAA
63 -AACT-TGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAA
* * * *
78064 AGCCTTATTACGCGCCTTAAATGCTTTTATAACCTCATAATTGAT
126 AGCCTTATTACTCG-CTTAAATGGTTTT-TTACTTCATAATTGAT
********** * * * * * *
78109 TTTAAGCTNNNNNNNNNNATATTTTTTATTAAAATAGATTATAATTGAATATCTACCTTAAGAAA
1 TTTAAG-TTAAATTTTTTACATTTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAAAA
* * * * *
78174 -TATGAAAAAAAAGATATCCATTGGTAAGAAAAGTTCATTTATAGTCACTCATGCCTTCAAAAGT
65 CT-TGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGC
** * *********
78238 CTTATTACTCGCTCTAAATTATTTTATANNNNNNNNNNTGAT
129 CTTATTACTCGCT-TAAATGGTTTTTTA-CTTCATAATTGAT
* * * * * * *
78280 TTTAATTTAAATTTTATA-ATATTTTTGAGTAAAACATATTATAATTAAATG-CTTACCTCGAAA
1 TTTAAGTTAAATTTTTTACAT-TTTTT-ATTAAAACAGATTATAATTGAATGTC-TGCCTCAAAA
* * * * * ** * *
78343 AACTTGAAGAAAAACATATCCATTAGTAAGAAAAGTTCATTTTTGGTCACTTATACCTTTGAAAG
63 AACTTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAG
* * * * *
78408 CCTTATTGCTCGCATTAAATGATTTCGTAACTACATAATTGAT
128 CCTTATTACTCGC-TTAAATGGTTT-TTTACTTCATAATTGAT
** * * *
78451 TTTAAGTTGAAGGTTTTTACATTTTTTATT-AAACAGATTATAATTGAATATTTGCCTCAAGAAA
1 TTTAAGTT-AAATTTTTTACATTTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAAAA
********** * *
78515 CTTGAAGAAAAAGATATCCATTGGTAAGAANNNNNNNNNNATACTAACCCATGCCTTCGAAAGCC
65 CTTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCC
* * * * * **
78580 TTATTACTCACTTTAAATAGTTTTGTAAATTCATATTTTCT
130 TTATTACTCGC-TTAAATGGTTTT-TTACTTCATAATTGAT
* * * * * * ** *
78621 TTTAGGTTGAATTTTTTTA-TTATTTTTATTAAAAGAGAATATAATTGAATGCCTGCCTTGAGAA
1 TTTAAGTT-AAATTTTTTACAT-TTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAAA
* * ** * *
78685 ACATGAGGAAAAAGATATCCATTGACAAGAATAGTCCTTTTATAGTCACCCATGCCTTCGAAAGC
64 ACTTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGC
* * *
78750 CTTATTACTAGCTTGAAATAGTTTTTTAATCTT-ATAATTAGGT
129 CTTATTACTCGCTT-AAATGGTTTTTT-A-CTTCATAATT-GAT
* * * *
78793 TTT-AGTTGAACTTTTTAACATTTTTTATTAAAATAGATTATAATT-AATTATCTGCCTCAAAAA
1 TTTAAGTT-AAATTTTTTACATTTTTTATTAAAACAGATTATAATTGAA-TGTCTGCCTCAAAAA
* * * * * * * *
78856 AATGTAAAG-AAATGATAGCCATTGATAAGAGAAGTCTATTTATAGTCATCCAT-CTCTTCGAAA
64 ACT-TGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGC-CTTCGAAA
* ** * * *******
78919 GCCTTATTACTCGCCTAAAATAATTTTATAACATCATNNNNNNN
127 GCCTTATTACTCG-CTTAAATGGTTTT-TTACTTCATAATTGAT
*** * * * * * * * *
78963 NNNAATTTGAATTTTTTTTATATTTTTTATTATAGCATATTATAATTGAATGTCTACCTCAAGAA
1 TTTAAGTT-AA-ATTTTTTACATTTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAAA
* * * * * *
79028 ACATGAAGAAAAAGATATCTATTGGCAAGAAAAGTCTATTTATAGTCACCTATACCTTCGAAAGC
64 ACTTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGC
*********************
79093 CTTATTACTNNNNNNNNNNNNNNNNNNNNNNNCATAATTGAT
129 CTTATTACT--CGCTTAAATGGTTTTTTACTTCATAATTGAT
* *
79135 TTTAAGTTAAATTGTTTTACATTTTTTATTAAAACAGATTATAAATGAATGTCTGCATCAAAAAA
1 TTTAAGTTAAATT-TTTTACATTTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAAAA
* * * * *
79200 CTTGAAGAAAAATATATCCATTGGCAAGAAAACTCCATTTATAGTCACCCATGCCTTTGAAATCC
65 CTTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCC
79265 TTATTACTCGCTTGAAATGGTTTTTTACTTTCATAATT-AGT
130 TTATTACTCGCTT-AAATGGTTTTTTAC-TTCATAATTGA-T
* ********* * * * *
79306 TTTAAGTTGAACTNNNNNNNNNNTTTTTATTAAAATAGATTATAATTGATTGTCTGCTTGAAAAT
1 TTTAAGTT-AAAT-TTTTTACATTTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAA-
* * * * * * * *
79371 AA-TGTAAAG-AAATGATATTCATTGATAAGATAAGTCCATTTATAGTTACCCATACCTTTGAAA
63 AACT-TGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAA
* * * ******
79434 GCCTTATTACTCGCCTTAAATGCTTTTATAACCTCATANNNNNNN
127 GCCTTATTACTCG-CTTAAATGGTTTT-TTACTTCATA-ATTGAT
*********** * * * * * *
79479 NNNNNNNNNGTTTTTTTATATTTTTTATTAAAATAGATTATAATTGAATATCTACCTC-GAGAAC
1 TTTAAGTTAAATTTTTTACATTTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAAAAC
* * * ********** *
79543 ATGAAAAAAAAAAGATATCCATTGGCAAGAAAAGTCCATTTATAGTNNNNNNNNNNTTCGAAAGT
66 TTG--AAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGC
** *
79608 CTTATTACTCGCTCTAAATTATTTTATAACCTT-ATAATTGAT
129 CTTATTACTCGCT-TAAATGGTTTT-TTA-CTTCATAATTGAT
* * **********
79650 TTTAATTTAAATTTTATA-ATTTGTTTTTATTAAAACAGATTATAATNNNNNNNNNNCCTCAAAA
1 TTTAAGTTAAATTTTTTACA--T-TTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAA
* * * * * * * *
79714 AA-TGTGAAGAAAAAAATATCCTTTGGCAAGAAAAGTTCATTTTTGGTCACCCATACCTTTGAAA
63 AACT-TGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAA
* * * * *
79778 GCCTTATTGCTCGCATTAAATGATTTCATAACTACATAATTGAT
127 GCCTTATTACTCGC-TTAAATGGTTT-TTTACTTCATAATTGAT
* ********** * * * ** *
79822 TTTAAGTTGAAGTTTTTNNNNNNNNNNATTAAAACAGATTATAATTGAATGTTTTCTTTGAGAAA
1 TTTAAGTT-AAATTTTTTACATTTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAAAA
*
79887 CTTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCTATTTAT
65 CTTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTAT
79929 NNNNNNNNNN
Statistics
Matches: 1417, Mismatches: 503, Indels: 144
0.69 0.24 0.07
Matches are distributed among these distances:
169 7 0.00
170 160 0.11
171 677 0.48
172 500 0.35
173 67 0.05
174 6 0.00
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.36
Consensus pattern (168 bp):
TTTAAGTTAAATTTTTTACATTTTTTATTAAAACAGATTATAATTGAATGTCTGCCTCAAAAAAC
TTGAAGAAAAAGATATCCATTGGTAAGAAAAGTCCATTTATAGTCACCCATGCCTTCGAAAGCCT
TATTACTCGCTTAAATGGTTTTTTACTTCATAATTGAT
Found at i:80859 original size:171 final size:171
Alignment explanation
Indices: 80516--80871 Score: 387
Period size: 171 Copynumber: 2.1 Consensus size: 171
80506 NNNNNNNNNN
* * * * *
80516 AAGAAAAGTCCATTTACAGTCACCCATGCCTTTGAAAGCCTTATTACTCGCTTTCAAAAGTTTTT
1 AAGAAAAGTCCATTGACAATCACACATGCCTTCGAAAGCCTTATTACTCGCTTTCAAAAGTTTTA
* * * * *
80581 TAATCTCGTAATTAGTTTTAAGTTGAACTTTTTTTCATTTTTTATTAAAACAGATTTTAATTGAA
66 TAACCTCGTAATTAGATTTAAGTTGAAATTTTTTTCATTTTTTATTAAAACAGATTATAATTCAA
* **
80646 TGTTTGCCTCAAAAAACGTAAAGAAAATGATATCTGTTGGC
131 TGTTTGCCTCAAAAAACGTAAAGAAAAAGATATCCATTGGC
* * * *
80687 AAGAAAAGTCCATTGATAATCACACATGCCTTCGGAAGGCTTATTACTCGCTTT-AAATGATTTT
1 AAGAAAAGTCCATTGACAATCACACATGCCTTCGAAAGCCTTATTACTCGCTTTCAAAAG-TTTT
* * *
80751 ATAACCTCGTAATT-GAATTTAA-TTTAAATTGTTTTAT-ATTTTTTATTAACACATATTATAAT
65 ATAACCTCGTAATTAG-ATTTAAGTTGAAATT-TTTT-TCATTTTTTATTAAAACAGATTATAAT
* * * ** * * *
80813 TCATTGTTTTCTTTGAGAAACGTGAATAAAAAGATATCCATTGGC
127 TCAATGTTTGCCTCAAAAAACGTAAAGAAAAAGATATCCATTGGC
*
80858 AAGAGAAGTCCATT
1 AAGAAAAGTCCATT
80872 TATAGTCNNN
Statistics
Matches: 152, Mismatches: 29, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
170 11 0.07
171 140 0.92
172 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (171 bp):
AAGAAAAGTCCATTGACAATCACACATGCCTTCGAAAGCCTTATTACTCGCTTTCAAAAGTTTTA
TAACCTCGTAATTAGATTTAAGTTGAAATTTTTTTCATTTTTTATTAAAACAGATTATAATTCAA
TGTTTGCCTCAAAAAACGTAAAGAAAAAGATATCCATTGGC
Done.