Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400963.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4123.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838

Length: 1398
ACGTcount: A:0.29, C:0.10, G:0.09, T:0.30

Warning! 321 characters in sequence are not A, C, G, or T


Found at i:1397 original size:170 final size:171

Alignment explanation


    Indices: 955--1398  Score: 426
    Period size: 171  Copynumber: 2.6  Consensus size: 171

        945 NNNNNNNNAT

                 *                 **                *   *    *   *      *   
        955 TTGAATTTTTTTAT-ATTTTCTAAAAAAATAAATTATAATTGAATATCTGACTTAAGAAACTTGA
          1 TTGAAATTTTTTATAATTTT-TATTAAAATAAATTATAATTAAATGTCTGCCTTGAGAAACATGA

                     *       *      *                     **********        *
       1019 AGAAAAAGACATCCATTGGCAAGAGAAGTCCATTTATAGTCACCCANNNNNNNNNNAGCCTTATT
         65 AGAAAAAGATATCCATTAGCAAGAAAAGTCCATTTATAGTCACCCATGCCTTCAAAAGCCTTATG

                                                      
       1084 ACTCGCCTTAAATATTTTTATAACCTCAAAATTGATTTTAAG
        130 ACTCGCCTTAAATATTTTTATAACCTCAAAATTGATTTTAAG

                **                        * *                                
       1126 TTGATTTTTTTTATAATTTTTATTAAAATACACTATAATTAAATGTCTGCCTTGAGAAACATGAA
          1 TTGAAATTTTTTATAATTTTTATTAAAATAAATTATAATTAAATGTCTGCCTTGAGAAACATGAA

                            **********   *                            *      
       1191 GAAAAAGATATCCATTNNNNNNNNNNGTCTATTTATAGTCACCCATGCCTTCAAAAGCTTTATGA
         66 GAAAAAGATATCCATTAGCAAGAAAAGTCCATTTATAGTCACCCATGCCTTCAAAAGCCTTATGA

                 *                 *    *     *       
       1256 CTCGCTTTAAATAGTTTTT-TAATCTCACAATTGGTTTTAAG
        131 CTCGCCTTAAATA-TTTTTATAACCTCAAAATTGATTTTAAG

                                 *  *     *               *                  
       1297 TTGAAATTTTTTAT-ATTTTTTTTGAAATAGATTATAATTAAATGTTTGCCTTGAGAAACATGAA
          1 TTGAAATTTTTTATAATTTTTATTAAAATAAATTATAATTAAATGTCTGCCTTGAGAAACATGAA

                     *                            
       1361 GAAAAAGATTTCCATTAGCAAGAAAAGTCCATTTATAG
         66 GAAAAAGATATCCATTAGCAAGAAAAGTCCATTTATAG


Statistics
Matches: 214,  Mismatches: 57, Indels: 5
        0.78            0.21        0.02

Matches are distributed among these distances:
 170   71  0.33
 171  133  0.62
 172   10  0.05

ACGTcount: A:0.35, C:0.12, G:0.11, T:0.37


Consensus pattern (171 bp):   
TTGAAATTTTTTATAATTTTTATTAAAATAAATTATAATTAAATGTCTGCCTTGAGAAACATGAA
GAAAAAGATATCCATTAGCAAGAAAAGTCCATTTATAGTCACCCATGCCTTCAAAAGCCTTATGA
CTCGCCTTAAATATTTTTATAACCTCAAAATTGATTTTAAG
Done.