Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400966.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4126.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2546
ACGTcount: A:0.23, C:0.07, G:0.08, T:0.22

Warning! 1033 characters in sequence are not A, C, G, or T


Found at i:2539 original size:170 final size:169

Alignment explanation


    Indices: 2046--2544  Score: 588
    Period size: 171  Copynumber: 2.9  Consensus size: 169

       2036 NNNNNNNNNN

                                   *        * *         *                    
       2046 TGAGATTATAAAACCATTTAAAGCGAGTAATATGGCTTTTGAAGCAATGGGTGACTATAAATGGA
          1 TGAGATTATAAAACCATTTAAAGTGAGTAATAAGCCTTTTGAAGAAATGGGTGACTATAAATGGA

                    *   *      *       *     *     **   *          *     *   
       2111 CTTTTTTTGCTAGTGAATACCTT-TTTCTTCATATTTCTCAAGGCAGACATTCAACTATAGCCTG
         66 CTTTTTTTTC-AATGAAT-GCTTGTTTTTTC-TGTTTCTTGAGGTAGACATTCAAATATAGTCTG

                          **    *        *   **       
       2175 TTTTAACTAAAAATGCAAAACAATTCAACTTAATTTCAATTA
        128 TTTTAACTAAAAATATAAAAAAATTCAACATAAAATCAATTA

                          *   *       *      * *                           * 
       2217 TGAGATTATAAAACTATTGAAAGTGACTAATAAACTTTTTGAAGAAATGGGTGACTATAAATGAA
          1 TGAGATTATAAAACCATTTAAAGTGAGTAATAAGCCTTTTGAAGAAATGGGTGACTATAAATGGA

                                          *                       *          
       2282 CTTTTTTTATCAATGAATGCTTGTTTTCTTATGTTTCTTGAGGTAGACATTCAATTATAGTCTGT
         66 CTTTTTTT-TCAATGAATGCTTGTTTT-TTCTGTTTCTTGAGGTAGACATTCAAATATAGTCTGT

                *        *                           
       2347 TTTAGCTAAAAATCTAAAAAAATTCAACATAAAATCAATTA
        129 TTTAACTAAAAATATAAAAAAATTCAACATAAAATCAATTA

                                                              *     * *      
       2388 TGAGATTATAAAACCATTTAAAGTGAGTAATAAGCCTTTTGAAGAAAT-GATGACTTTTAATGGA
          1 TGAGATTATAAAACCATTTAAAGTGAGTAATAAGCCTTTTGAAGAAATGGGTGACTATAAATGGA

                                                    *    * *                 
       2452 CTTTTCTTTTCAATGAATGCTTGTTTTTTCTCGTTTCTTGCGGTAAAAATTCAAATATAGTCTGT
         66 CTTTT-TTTTCAATGAATGCTTGTTTTTTCT-GTTTCTTGAGGTAGACATTCAAATATAGTCTGT

                  *                     
       2517 TTTAACAAAAAATATAAAAAAATTCAAC
        129 TTTAACTAAAAATATAAAAAAATTCAAC

       2545 TT


Statistics
Matches: 278,  Mismatches: 45, Indels: 11
        0.83            0.13        0.03

Matches are distributed among these distances:
 169    3  0.01
 170   92  0.33
 171  180  0.65
 172    3  0.01

ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37


Consensus pattern (169 bp):   
TGAGATTATAAAACCATTTAAAGTGAGTAATAAGCCTTTTGAAGAAATGGGTGACTATAAATGGA
CTTTTTTTTCAATGAATGCTTGTTTTTTCTGTTTCTTGAGGTAGACATTCAAATATAGTCTGTTT
TAACTAAAAATATAAAAAAATTCAACATAAAATCAATTA
Done.