Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400968.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4128.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 835

Length: 1392
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.27

Warning! 103 characters in sequence are not A, C, G, or T


Found at i:155 original size:15 final size:15

Alignment explanation


    Indices: 135--190  Score: 76
    Period size: 15  Copynumber: 3.7  Consensus size: 15

        125 GCCAAAGTTC

                  *        
        135 CCAAAATATTTCCTT
          1 CCAAAACATTTCCTT

                  *      * 
        150 CCAAAATATTTCCCT
          1 CCAAAACATTTCCTT

                 *         
        165 CCAAAGCATTTCCTT
          1 CCAAAACATTTCCTT

                       
        180 CCAAAACATTT
          1 CCAAAACATTT

        191 GGGAGGGAAA


Statistics
Matches: 36,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   36  1.00

ACGTcount: A:0.34, C:0.30, G:0.02, T:0.34


Consensus pattern (15 bp):   
CCAAAACATTTCCTT

Found at i:745 original size:21 final size:22

Alignment explanation


    Indices: 720--763  Score: 72
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        710 AAGTGATTAA

                                  
        720 TTTAAGTTATTTTA-GTTAAAT
          1 TTTAAGTTATTTTATGTTAAAT

                           *      
        741 TTTAAGTTATTTTATTTTAAAT
          1 TTTAAGTTATTTTATGTTAAAT

             
        763 T
          1 T

        764 ACTTTAAGAG


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  21   14  0.67
  22    7  0.33

ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61


Consensus pattern (22 bp):   
TTTAAGTTATTTTATGTTAAAT
Done.