Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018400991.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4152.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4131
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.25

Warning! 1447 characters in sequence are not A, C, G, or T


Found at i:3452 original size:171 final size:172

Alignment explanation


    Indices: 3095--3528  Score: 403
    Period size: 171  Copynumber: 2.5  Consensus size: 172

       3085 NNNNNNNNNN

                    *  *   *                        *                 *      
       3095 GGAATGAGAGATTATAAATGGACTTTTCTTGCCAATGAATGCTTTTCTCTTCATATTTTTCAAGG
          1 GGAATGAGTGACTATCAATGGACTTTTCTTGCCAATGAATACTTTTCTCTTCATATTTCTCAAGG

                *                               *            *          *  * 
       3160 TAGAGATTCAATTATAGTCTGTTTTAACTAAAAAGTTTAAAAAAATTAAGTATAAAATCAGTTTT
         66 TAGACATTCAATTATAGTCTGTTTTAACTAAAAAGTGTAAAAAAATTAACTATAAAATCAATTAT

               *                 *            ********
       3225 GAGTTTATAAAACTATTTAAAGTGAGTAATAAGGNNNNNNNN
        131 GAGATTATAAAACTATTTAAACTGAGTAATAAGGCTTTTGAA

            **    *                                  *    *       *      *   
       3267 NNAATGGGTGACTATCAATGGACTTTTCTTGCCAATGAATATTTTTTTCTTCATGTTTCTCGAGG
          1 GGAATGAGTGACTATCAATGGACTTTTCTTGCCAATGAATACTTTTCTCTTCATATTTCTCAAGG

                 *          *                           *    *               
       3332 TAGACTTTCAATTATATTCTGTTTTAA-TAAAAAGTGTAAAAAATTTCACCT-TAAAATCAATTA
         66 TAGACATTCAATTATAGTCTGTTTTAACTAAAAAGTGTAAAAAAATT-AACTATAAAATCAATTA

                                                        
       3395 TGAGATTATAAAACTATTTAAACCT-AGTAATAAGGCTTTTGAA
        130 TGAGATTATAAAACTATTTAAA-CTGAGTAATAAGGCTTTTGAA

                                         *    *       * *   *  *   *     *   
       3438 GGAATGAGTGACTATAACAA--GACTTTTATTGCTAATGAATGCCTTTATCCTCACATTTTTTC-
          1 GGAATGAGTGACTAT--CAATGGACTTTTCTTGCCAATGAATACTTTTCTCTTCATA-TTTCTCA

               *               *  *      
       3500 AGGAAGACATTCAATTATAATCGGTTTTA
         63 AGGTAGACATTCAATTATAGTCTGTTTTA

       3529 NNNNNNNNNN


Statistics
Matches: 209,  Mismatches: 48, Indels: 11
        0.78            0.18        0.04

Matches are distributed among these distances:
 171  121  0.58
 172   85  0.41
 173    3  0.01

ACGTcount: A:0.35, C:0.11, G:0.14, T:0.38


Consensus pattern (172 bp):   
GGAATGAGTGACTATCAATGGACTTTTCTTGCCAATGAATACTTTTCTCTTCATATTTCTCAAGG
TAGACATTCAATTATAGTCTGTTTTAACTAAAAAGTGTAAAAAAATTAACTATAAAATCAATTAT
GAGATTATAAAACTATTTAAACTGAGTAATAAGGCTTTTGAA
Done.