Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401012.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4174.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1834
ACGTcount: A:0.26, C:0.10, G:0.08, T:0.29

Warning! 493 characters in sequence are not A, C, G, or T


Found at i:426 original size:170 final size:170

Alignment explanation


    Indices: 7--457  Score: 554
    Period size: 173  Copynumber: 2.6  Consensus size: 170

          1 ATTGGT

                     *           *      *                                    
          7 AAGAAAAGTCCATTTATAGTCTCTCATTTCTTCAAAAGCCTTATTACTTGATTTAAATGGTTTTA
          1 AAGAAAAGTTCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTT-ATTTAAATGGTTTTA

                  *     *           *                   *                    
         72 TAATCTAAAAATCGATTTTAAGTTTAATTTTTTTTACATTTTTTGTTAAAACAAATTATAATTGA
         65 TAATCTCAAAATTGATTTTAAGTTCAA-TTTTTTTACATTTTTTATTAAAACAAATTATAATTGA

                   *          *    *       *          
        137 ATGTCTACCTCATGAAATGTGAAGAGAAAGGTATTCTATTAG
        129 ATGTCTAACTCATGAAATCTGAACAGAAAGGCATTCTATTAG

                                                    *            *           
        179 TAAGAAAAG-TCTATTTATAGT-ATCTCATTCCTTCAAAAACCTTATTACTTGCTTTAAATGGTT
          1 -AAGAAAAGTTC-ATTTATAGTCA-CTCATTCCTTCAAAAGCCTTATTACTT-ATTTAAATGGTT

                                                                    **       
        242 TTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTT-C-TTTTCTTATTAAAACAGTTTATAAT
         62 TTATAATCTCAAAATTGATTTTAAGTTCAATTTTTTTACATTTT-TTATTAAAACAAATTATAAT

                                                         
        305 TGAATGTCTAACTCATGAAATCTGAACAGAAAGGCATTC-ATT-G
        126 TGAATGTCTAACTCATGAAATCTGAACAGAAAGGCATTCTATTAG

                             *       * *       *       *                     
        348 ACGAGAAAAGTTCATTTGTAGTCACCCGTTCCTTCGAAAGCCTAATTACTTATTTTAAATGGTTT
          1 A--AGAAAAGTTCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTTA-TTTAAATGGTTT

               *  *               *                      
        413 TATTATTTCAAAATTGATTTTATGTTCAATTTTTTTTACATTTTT
         63 TATAATCTCAAAATTGATTTTAAGTTCAA-TTTTTTTACATTTTT

        458 GGTTACGACN


Statistics
Matches: 242,  Mismatches: 25, Indels: 23
        0.83            0.09        0.08

Matches are distributed among these distances:
 168    1  0.00
 169    1  0.00
 170   82  0.34
 171   63  0.26
 172   10  0.04
 173   85  0.35

ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43


Consensus pattern (170 bp):   
AAGAAAAGTTCATTTATAGTCACTCATTCCTTCAAAAGCCTTATTACTTATTTAAATGGTTTTAT
AATCTCAAAATTGATTTTAAGTTCAATTTTTTTACATTTTTTATTAAAACAAATTATAATTGAAT
GTCTAACTCATGAAATCTGAACAGAAAGGCATTCTATTAG
Done.