Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401022.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4183.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 775

Length: 1292
ACGTcount: A:0.21, C:0.08, G:0.07, T:0.20

Warning! 553 characters in sequence are not A, C, G, or T


Found at i:325 original size:171 final size:171

Alignment explanation


    Indices: 1--330  Score: 405
    Period size: 171  Copynumber: 1.9  Consensus size: 171

                                                    **            *         *
          1 ACATTTTTGATTAAAACATACTATAATTGAATGTCTACCTTGAGAAACGTGAAGTAACAAGCATT
          1 ACATTTTTGATTAAAACATACTATAATTGAATGTCTACCTCAAGAAACGTGAAGAAACAAGCATC

                            **                                      * *     *
         66 CATTAACAAAAAAAGTCCATTTAAAGTCATCCATTCCTTAAAAAGACTTATTACTCTCTTTAAAT
         66 CATTAACAAAAAAAGTAAATTTAAAGTCATCCATTCCTTAAAAAGACTTATTACTCGCCTTAAAC

                   **********                        
        131 GGTTTTANNNNNNNNNNATTGATTTTAAGGTGAATTTTTTT
        131 GGTTTTATAATCTCATAATTGATTTTAAGGTGAATTTTTTT

                                                            *                
        172 ACATTTTTGATTAAAACATGA-TATAATTGAATGTCTACCTCAAGAAATGTGAAGAAACAAGCAT
          1 ACATTTTTGATTAAAACAT-ACTATAATTGAATGTCTACCTCAAGAAACGTGAAGAAACAAGCAT

                 *    *             *                                        
        236 CCATTGACAAGAAAAGTAAATTTAGAGTCA-CTCATTCCTTAAAAA-AGCTTATTACTCGCCTTA
         65 CCATTAACAAAAAAAGTAAATTTAAAGTCATC-CATTCCTTAAAAAGA-CTTATTACTCGCCTTA

                                            
        299 AACGGTTTTATAATCTCATAATTGATTTTAAG
        128 AACGGTTTTATAATCTCATAATTGATTTTAAG

        331 NNNNNNNNNN


Statistics
Matches: 133,  Mismatches: 23, Indels: 6
        0.82            0.14        0.04

Matches are distributed among these distances:
 170    2  0.02
 171  130  0.98
 172    1  0.01

ACGTcount: A:0.37, C:0.14, G:0.12, T:0.34


Consensus pattern (171 bp):   
ACATTTTTGATTAAAACATACTATAATTGAATGTCTACCTCAAGAAACGTGAAGAAACAAGCATC
CATTAACAAAAAAAGTAAATTTAAAGTCATCCATTCCTTAAAAAGACTTATTACTCGCCTTAAAC
GGTTTTATAATCTCATAATTGATTTTAAGGTGAATTTTTTT
Done.