Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401023.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4184.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3394
ACGTcount: A:0.23, C:0.06, G:0.07, T:0.21

Warning! 1462 characters in sequence are not A, C, G, or T


Found at i:3334 original size:170 final size:169

Alignment explanation


    Indices: 2995--3364  Score: 436
    Period size: 170  Copynumber: 2.2  Consensus size: 169

       2985 NNNNNNNNNN

                                                                             
       2995 AATCTATTTTAATAAAAATATAAAAAAATTTAAATTAAAATCAATTATGATTTTGTAAAATCATT
          1 AATCTATTTTAATAAAAATAT-AAAAAATTTAAATTAAAATCAATTATGATTTTGTAAAATCATT

                                                                             
       3060 TAAACCGAGTAATAAGACTTTTGAAGTTATGGGTGATTATAAATGGACTTCTCTTATCAATGGAT
         65 TAAACCGAGTAATAAGACTTTTGAAGTTATGGGTGATTATAAATGGACTTCTCTTATCAATGGAT

            **********    *                         
       3125 NNNNNNNNNNACACGTTTGTTGAGAAAGACATCCAATTAT
        130 ATTATTTTCTACACATTTGTTGAGAAAGACATCCAATTAT

                             *                                               
       3165 AATCTATTTTAATAAAATTATAAAAACATTTAAATTAAAATCAATTATGATTTTGTAAAATCATT
          1 AATCTATTTTAATAAAAATATAAAAA-ATTTAAATTAAAATCAATTATGATTTTGTAAAATCATT

                            *       **********                               
       3230 TAAACCGAGTAATAAGGCTTTTGANNNNNNNNNNGATTATAAATGGACTTCTCTTA-CTAATGGA
         65 TAAACCGAGTAATAAGACTTTTGAAGTTATGGGTGATTATAAATGGACTTCTCTTATC-AATGGA

                       **      *     **      *       
       3294 TATTATTTTCTTTACATTTTTTGAGGCAGACATTCAATTAT
        129 TATTATTTTCTACACATTTGTTGAGAAAGACATCCAATTAT

                 *                        
       3335 AATCTTTTTTAATAAAAATATAAAAAATTT
          1 AATCTATTTTAATAAAAATATAAAAAATTT

       3365 CTACTTAAAA


Statistics
Matches: 167,  Mismatches: 31, Indels: 5
        0.82            0.15        0.02

Matches are distributed among these distances:
 169   10  0.06
 170  157  0.94

ACGTcount: A:0.39, C:0.09, G:0.10, T:0.37


Consensus pattern (169 bp):   
AATCTATTTTAATAAAAATATAAAAAATTTAAATTAAAATCAATTATGATTTTGTAAAATCATTT
AAACCGAGTAATAAGACTTTTGAAGTTATGGGTGATTATAAATGGACTTCTCTTATCAATGGATA
TTATTTTCTACACATTTGTTGAGAAAGACATCCAATTAT
Done.