Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401045.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4204.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2131
ACGTcount: A:0.15, C:0.05, G:0.06, T:0.14

Warning! 1286 characters in sequence are not A, C, G, or T


Found at i:2015 original size:21 final size:21

Alignment explanation


    Indices: 1986--2025  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1976 GAATGGGTGA

                                 
       1986 CAATAAATGAACTTTTCTTGC
          1 CAATAAATGAACTTTTCTTGC

                *    **        
       2007 CAATGAATGCTCTTTTCTT
          1 CAATAAATGAACTTTTCTT

       2026 CNNNNNNNNN


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42


Consensus pattern (21 bp):   
CAATAAATGAACTTTTCTTGC
Done.