Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401046.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4205.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1262
ACGTcount: A:0.27, C:0.10, G:0.08, T:0.30

Warning! 328 characters in sequence are not A, C, G, or T


Found at i:1197 original size:171 final size:162

Alignment explanation


    Indices: 919--1250  Score: 348
    Period size: 171  Copynumber: 2.0  Consensus size: 162

        909 TTTTATCATC

                                              * *   *                      * 
        919 TCAAAATTAATTTTAAGTTCAGATTTTTTTTACATTTTTGGTTAAAACATATTAAAATTGAATGT
          1 TCAAAATTAATTTTAAGTTCAGATTTTTTTTACAATATTGATTAAAACATATTAAAATTGAATAT

                                      *                  *          * *      
        984 TTACCTTGAGAAACATAAAGAAAAAGGCATTCACTAGCAAGAAAAGTCTATTTATATTTACCCAT
         66 TTACCTTGAGAAACATAAAGAAAAAGACATTCACTAGCAAGAAAACTC-ATTTATAGTCACCCAT

                                              
       1049 T-CTTTCAAAAGCATTATTACTCGCTTTAAATGG
        130 TAC-TTCAAAAGCATTATTACTCGCTTTAAATGG

                              *      *                                      *
       1082 NNNNNNNNNNTCAAAATTGA-TTTAGGTTCA-ATTTTTTTTACAATATTGATTAAAACATATTAT
          1 ----------TCAAAATTAATTTTAAGTTCAGATTTTTTTTACAATATTGATTAAAACATATTAA

                                   **                   * *       *          
       1145 AATTGAATATTTACCTTGAGAAAGTTGAAA-AAAAAGACATTCATTGGCAAGAACACTCATTTAT
         56 AATTGAATATTTACCTTGAGAAACAT-AAAGAAAAAGACATTCACTAGCAAGAAAACTCATTTAT

                 *                *        *          
       1209 AGTCATCCATTACTTCAAAAGCCTTATTACTTGCTTTAAATG
        120 AGTCACCCATTACTTCAAAAGCATTATTACTCGCTTTAAATG

       1251 ATTTTATAAT


Statistics
Matches: 138,  Mismatches: 19, Indels: 7
        0.84            0.12        0.04

Matches are distributed among these distances:
 170   41  0.30
 171   76  0.55
 172   12  0.09
 173    9  0.07

ACGTcount: A:0.37, C:0.13, G:0.11, T:0.37


Consensus pattern (162 bp):   
TCAAAATTAATTTTAAGTTCAGATTTTTTTTACAATATTGATTAAAACATATTAAAATTGAATAT
TTACCTTGAGAAACATAAAGAAAAAGACATTCACTAGCAAGAAAACTCATTTATAGTCACCCATT
ACTTCAAAAGCATTATTACTCGCTTTAAATGG
Done.