Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401051.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4210.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2200
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.24

Warning! 744 characters in sequence are not A, C, G, or T


Found at i:1889 original size:172 final size:171

Alignment explanation


    Indices: 1456--1926  Score: 491
    Period size: 172  Copynumber: 2.7  Consensus size: 171

       1446 TTTAAATGGT

                *                *          * *       *         *            
       1456 TTTATAAACATGAAGAAAAAGACATTCATTAGTAGGAAAAGTTTATTTATAGTCACCCATTCCTT
          1 TTTAGAAACATGAAGAAAAAGGCATTCATTAGCAAGAAAAGTCTATTTATAGACACCCA-TCCTT

                    *                 *          *  *     *    *             
       1521 TAAAAGCCATATTACTCGCTTTAAATAATTTTATAATATCGTAATTTATTTGAAGTTGAATATTT
         65 TAAAAGCCTTATTACTCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTTGAATATTT

                       *         *                    
       1586 TTAGCATTGTTTATTAAAACATACTATAATTAAACATCTACC
        130 TTAGCATTGTTGATTAAAACAGACTATAATTAAACATCTACC

                     *       *          *       *       *  *    * *          
       1628 TTTAGAAACGTGAAGAATAAGGCATTCACTAGCAAAAAAAAGTCCATCTATAAATACCCATCCCT
          1 TTTAGAAACATGAAGAAAAAGGCATTCATTAGC-AAGAAAAGTCTATTTATAGACACCCAT-CCT

                       *     *          *                                  * 
       1693 TTAAAAGCCTTGTTACTAGCTTTAAATGGTTTTATAATCTCATAATTGATTTTAAG-TGAAATTT
         64 TTAAAAGCCTTATTACTCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTTG-AATAT

                  *        *                  *  ** *    
       1757 TTTTA-TATT-TTGGGTTAAAACAGACTATAATTGAATGTTTA-C
        128 TTTTAGCATTGTT-GATTAAAACAGACTATAATTAAACATCTACC

                        *                  *                     *           
       1799 TTTGAGAAACATAAAGAAAAAGGCATTCATTGGCAAGAAAAGTCTATTTATAGCCACCCAGTCCT
          1 TTT-AGAAACATGAAGAAAAAGGCATTCATTAGCAAGAAAAGTCTATTTATAGACACCCA-TCCT

             *     *                            *                  *       
       1864 TCAAAAGGCTTATTTACTCGCTTTAAATGATTTTATGATCTCATAATTGATTTTAGGTTGAAT
         64 TTAAAAGCCTTA-TTACTCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTTGAAT

       1927 TGTTTTACAT


Statistics
Matches: 241,  Mismatches: 50, Indels: 16
        0.79            0.16        0.05

Matches are distributed among these distances:
 171   38  0.16
 172  124  0.51
 173   79  0.33

ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37


Consensus pattern (171 bp):   
TTTAGAAACATGAAGAAAAAGGCATTCATTAGCAAGAAAAGTCTATTTATAGACACCCATCCTTT
AAAAGCCTTATTACTCGCTTTAAATGATTTTATAATCTCATAATTGATTTTAAGTTGAATATTTT
TAGCATTGTTGATTAAAACAGACTATAATTAAACATCTACC
Done.