Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401058.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4217.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 811

Length: 1352
ACGTcount: A:0.19, C:0.07, G:0.06, T:0.20

Warning! 656 characters in sequence are not A, C, G, or T


Found at i:772 original size:171 final size:160

Alignment explanation


    Indices: 508--835  Score: 336
    Period size: 171  Copynumber: 2.0  Consensus size: 160

        498 NNNNNNNTAA

                     *  *   *                  *     *            *     *    
        508 ATTTTTTTATATTTTTCTTAAAATAGATTATAATTTAATATTTACCTCGAGAAATGTGAATAAAA
          1 ATTTTTTTAGATGTTTATTAAAATAGATTATAATTGAATATCTACCTCGAGAAACGTGAAGAAAA

             *         * *                     *                   *         
        573 AGATATCCATTGGTAAGAAAAGTCCATTTATAGC-CACCCATACCTTC-AAAGGCTTTATTACTC
         66 ACATATCCATTAGCAAGAAAAGTCCATTTATA-CTAACCCATACCTTCGAAA-GCCTTATTACTC

                    *                       
        636 GCTTTAAATGATTTTATAATCTCATAATTGAT
        129 GCTTTAAAGGATTTTATAATCTCATAATTGAT

                                                              *   *          
        668 NNNNNNNNNNATTTTTTTAGATAGTTTATTAAAATAGATTATAATTGAATGTCTGCCTCGAGAAA
          1 ----------ATTTTTTTAGAT-GTTTATTAAAATAGATTATAATTGAATATCTACCTCGAGAAA

                             *        *                      *  *            
        733 CGTGAAGAAAAACATATTCATTAGCAGGAAAAGTCCATTTATACTAACCTATGCCTTCGAAAGCC
         55 CGTGAAGAAAAACATATCCATTAGCAAGAAAAGTCCATTTATACTAACCCATACCTTCGAAAGCC

                               *    *             
        798 TTATTACTCGCTTTAAAGGCTTTTTTAATCTCATAATT
        120 TTATTACTCGCTTTAAAGGATTTTATAATCTCATAATT

        836 TNNNNNNNNN


Statistics
Matches: 134,  Mismatches: 21, Indels: 5
        0.84            0.13        0.03

Matches are distributed among these distances:
 170   12  0.09
 171  119  0.89
 172    3  0.02

ACGTcount: A:0.34, C:0.14, G:0.11, T:0.37


Consensus pattern (160 bp):   
ATTTTTTTAGATGTTTATTAAAATAGATTATAATTGAATATCTACCTCGAGAAACGTGAAGAAAA
ACATATCCATTAGCAAGAAAAGTCCATTTATACTAACCCATACCTTCGAAAGCCTTATTACTCGC
TTTAAAGGATTTTATAATCTCATAATTGAT
Done.