genome.fa.s3808.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401061.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_422.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61296

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3718--4651	171	5.5	170	73	7	660	36	12	13	34	1.83
6876--7411	170	3.1	169	78	2	534	35	13	14	32	1.85
7585--7906	171	1.9	170	81	4	398	36	13	13	33	1.84
9031--9637	172	3.5	170	73	5	409	36	11	14	33	1.83
9788--10110	171	1.9	161	83	5	330	35	11	15	34	1.83
11339--12492	170	6.8	171	72	5	671	33	12	12	35	1.81
11201--12492	513	2.5	513	80	0	1301	33	13	12	34	1.81
11370--12492	512	2.2	511	82	0	1274	34	12	12	35	1.81
11370--12659	513	2.5	511	79	1	1236	33	12	12	35	1.81
12957--13338	170	2.2	170	83	4	455	35	17	13	33	1.89
12957--13432	171	2.8	170	79	5	458	34	15	12	35	1.86
13187--13519	171	2.0	161	75	12	282	32	15	13	36	1.86
13727--14465	171	4.3	170	75	7	539	35	14	12	34	1.85
17102--17490	171	2.3	169	77	4	426	36	12	15	32	1.85
17106--17568	170	2.7	171	76	6	422	35	13	14	34	1.85
31826--32136	171	1.9	161	84	2	338	35	14	13	33	1.85
42121--43089	511	1.9	507	81	7	1159	36	12	13	34	1.82
41056--43089	171	11.9	170	73	4	1217	36	11	13	33	1.82
43393--43713	171	1.9	160	85	4	360	36	13	12	34	1.82
43569--44095	170	3.1	167	72	9	420	35	11	12	36	1.80
43450--44195	341	2.2	330	77	9	680	36	11	12	34	1.81
45382--45779	170	2.3	169	81	8	454	41	12	13	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46790--47152	170	2.1	168	74	10	355	38	13	12	32	1.82
47279--47966	170	4.0	171	72	8	427	36	12	14	33	1.83
47323--47966	342	1.9	331	79	7	637	35	12	14	34	1.84
49146--49483	170	2.0	172	80	4	389	36	10	14	37	1.81
50565--50890	170	2.0	158	77	13	311	36	11	15	33	1.84
50729--51045	169	1.9	159	76	12	302	36	10	14	34	1.81
52340--52656	170	1.9	161	81	10	379	37	13	13	32	1.84
54348--54824	170	2.8	168	82	5	519	36	14	14	35	1.86
56877--57237	171	2.1	172	80	5	392	39	13	14	32	1.85
58690--59055	171	2.1	170	79	8	386	34	10	17	34	1.84

Tables:   1

The End!