Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401065.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4224.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 942

Length: 1571
ACGTcount: A:0.16, C:0.08, G:0.07, T:0.13

Warning! 879 characters in sequence are not A, C, G, or T


Found at i:1543 original size:22 final size:22

Alignment explanation


    Indices: 1508--1563  Score: 94
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       1498 AGTCGCGCAA

                  *  *            
       1508 CGCTGCGGCACTACTTCTCCAG
          1 CGCTGCAGCGCTACTTCTCCAG

                                  
       1530 CGCTGCAGCGCTACTTCTCCAG
          1 CGCTGCAGCGCTACTTCTCCAG

                        
       1552 CGCTGCAGCGCT
          1 CGCTGCAGCGCT

       1564 GAGCTCTC


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  22   32  1.00

ACGTcount: A:0.12, C:0.41, G:0.25, T:0.21


Consensus pattern (22 bp):   
CGCTGCAGCGCTACTTCTCCAG
Done.