Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401073.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4231.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4346
ACGTcount: A:0.17, C:0.11, G:0.08, T:0.20

Warning! 1915 characters in sequence are not A, C, G, or T


Found at i:4329 original size:27 final size:28

Alignment explanation


    Indices: 4273--4329  Score: 64
    Period size: 27  Copynumber: 2.1  Consensus size: 28

       4263 AACTCCCTTG

                               *        
       4273 ATTGTTCAACTTAGAGGCTGCTCATTTC
          1 ATTGTTCAACTTAGAGGCTCCTCATTTC

                         *        *      
       4301 ATTGTTC-ACTTATA-GCTCCTTATTCTC
          1 ATTGTTCAACTTAGAGGCTCCTCATT-TC

              
       4328 AT
          1 AT

       4330 AAGTTTTGAT


Statistics
Matches: 25,  Mismatches: 3, Indels: 3
        0.81            0.10        0.10

Matches are distributed among these distances:
  26    8  0.32
  27   10  0.40
  28    7  0.28

ACGTcount: A:0.21, C:0.23, G:0.12, T:0.44


Consensus pattern (28 bp):   
ATTGTTCAACTTAGAGGCTCCTCATTTC
Done.