Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401079.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4238.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 973

Length: 1623
ACGTcount: A:0.18, C:0.06, G:0.07, T:0.18

Warning! 840 characters in sequence are not A, C, G, or T


Found at i:373 original size:171 final size:156

Alignment explanation


    Indices: 150--464  Score: 296
    Period size: 171  Copynumber: 1.9  Consensus size: 156

        140 NNNNNNTAGT

                  *                            *         *        *    *     
        150 AATAAGGCTTTTGAAGGAATGGGTGACTATAAATGTACATTTCTTTCCAATGAATG-TTTTTTTC
          1 AATAAGCCTTTTGAAGGAATGGGTGACTATAAATGGACATTTCTTGCCAATGAACGCTTCTTTT-

                   *        * *             *                               *
        214 TTCATGTTTCTCAAGATAGACAATC-AATTATTGTCTGCTTTAATCAAAAATGTAAA-AACATTT
         65 TTCATGTATCTCAAGACAAACAATCAAATT-TAGTCTGCTTTAATCAAAAATGTAAACAA-ATTG

                                         
        277 AACTTAAAATCAATTATTAGATTATAAAA
        128 AACTTAAAATCAATTATTAGATTATAAAA

                                                                             
        306 NNNNNNNNNNNNNNNAATAAGCCTTTTGAAGGAATGGGTGACTATAAATGGA-ATTTTCTTGCCA
          1 ---------------AATAAGCCTTTTGAAGGAATGGGTGACTATAAATGGACA-TTTCTTGCCA

                                          *      *              *      *     
        370 ATGAACGCTTCTTTTTTCATGTATCTCAAGGCAAACATTCAAATTTAGTCTGTTTTAATGAAAAA
         50 ATGAACGCTTCTTTTTTCATGTATCTCAAGACAAACAATCAAATTTAGTCTGCTTTAATCAAAAA

                          *               
        435 TGTAAACAAATTGAGCTTAAAATCAATTAT
        115 TGTAAACAAATTGAACTTAAAATCAATTAT

        465 GAGANNNNNN


Statistics
Matches: 125,  Mismatches: 15, Indels: 8
        0.84            0.10        0.05

Matches are distributed among these distances:
 170    1  0.01
 171  112  0.90
 172   12  0.10

ACGTcount: A:0.35, C:0.12, G:0.13, T:0.35


Consensus pattern (156 bp):   
AATAAGCCTTTTGAAGGAATGGGTGACTATAAATGGACATTTCTTGCCAATGAACGCTTCTTTTT
TCATGTATCTCAAGACAAACAATCAAATTTAGTCTGCTTTAATCAAAAATGTAAACAAATTGAAC
TTAAAATCAATTATTAGATTATAAAA
Done.