Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401086.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4244.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1175
ACGTcount: A:0.18, C:0.08, G:0.09, T:0.18

Warning! 558 characters in sequence are not A, C, G, or T


Found at i:641 original size:36 final size:35

Alignment explanation


    Indices: 592--705  Score: 142
    Period size: 35  Copynumber: 3.2  Consensus size: 35

        582 NNNNNNNTTC

                                               
        592 ATTAAATTGTTTAATTAAGTTATTAGGCCTAATTG
          1 ATTAAATTGTTTAATTAAGTTATTAGGCCTAATTG

                            *              *      
        627 ATTAAATTTGTTTAATGAAGTTATTCA--CTGTAATTG
          1 ATTAAA-TTGTTTAATTAAGTTATT-AGGC-CTAATTG

              *                     *     *    
        663 ATCAAATTGTTTAATTAAGTTATTGGGCCTCATTG
          1 ATTAAATTGTTTAATTAAGTTATTAGGCCTAATTG

                    
        698 ATTAAATT
          1 ATTAAATT

        706 AAACNNNNNN


Statistics
Matches: 66,  Mismatches: 8, Indels: 10
        0.79            0.10        0.12

Matches are distributed among these distances:
  35   36  0.55
  36   29  0.44
  37    1  0.02

ACGTcount: A:0.33, C:0.07, G:0.14, T:0.46


Consensus pattern (35 bp):   
ATTAAATTGTTTAATTAAGTTATTAGGCCTAATTG

Done.