Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401091.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4249.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 669

Length: 1115
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34


Found at i:55 original size:16 final size:17

Alignment explanation


    Indices: 34--67  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

         24 TCTGTTTATA

                             
         34 TAATCTT-TTTATCTAT
          1 TAATCTTGTTTATCTAT

                       *     
         50 TAATCTTGTTTGTCTAT
          1 TAATCTTGTTTATCTAT

             
         67 T
          1 T

         68 CCTTCTTTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    7  0.44
  17    9  0.56

ACGTcount: A:0.21, C:0.12, G:0.06, T:0.62


Consensus pattern (17 bp):   
TAATCTTGTTTATCTAT

Done.