Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401095.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4253.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1966
ACGTcount: A:0.29, C:0.08, G:0.10, T:0.29

Warning! 471 characters in sequence are not A, C, G, or T


Found at i:1141 original size:17 final size:17

Alignment explanation


    Indices: 1119--1154  Score: 63
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1109 TAAGGGTGAC

                   *         
       1119 TATAAATGGACTTTTCT
          1 TATAAATAGACTTTTCT

                             
       1136 TATAAATAGACTTTTCT
          1 TATAAATAGACTTTTCT

              
       1153 TA
          1 TA

       1155 CTAATGGATA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.33, C:0.11, G:0.08, T:0.47


Consensus pattern (17 bp):   
TATAAATAGACTTTTCT
Done.