Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401103.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4260.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 613

Length: 1023
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.30

Warning! 170 characters in sequence are not A, C, G, or T


Found at i:829 original size:172 final size:172

Alignment explanation


    Indices: 494--895  Score: 434
    Period size: 172  Copynumber: 2.3  Consensus size: 172

        484 NNNNNNNNNT

                             *          *        *                           
        494 ATTTATAGTCACCCATTGCTTCAAAAGCCTTATTAATAACTTTAAATAGTTTTGTAATCTCAAAA
          1 ATTTATAGTCACCCATTCCTTCAAAAGCTTTATTAATCACTTTAAATAGTTTTGTAATCTCAAAA

                   *             **** *               * *  *                 
        559 TTGATTTTAAGTTCAATTTTTTTTGATTTTCTAGTTAAAACATATTATAATTGAACGTCTACCCT
         66 TTGATTTAAAGTTCAATTTTTGAACAGTTTCTAGTTAAAACAGACTAGAATTGAACGTCTACCCT

            *     *          *      * *        *  *   
        624 GAGAAAGATAAAGAAGAGAACATTGATTGGCAAGACAAGTCC
        131 CAGAAACATAAAGAAGAAAACATTCACTGGCAAGAAAAATCC

                                                           *     *          *
        666 ATTTATAGTCACCCATTCCTTCAAAAGCTTTATTAATCACTTTAAATGGTTTTATAATCTCAAAG
          1 ATTTATAGTCACCCATTCCTTCAAAAGCTTTATTAATCACTTTAAATAGTTTTGTAATCTCAAAA

                      *  *                   *               *      *    *  *
        731 TTGATTTAAATTTGAATTCTTTGAACAGTTT-TGGTTAAAACAGACTAGGATTGAATGTCTTCCT
         66 TTGATTTAAAGTTCAATT-TTTGAACAGTTTCTAGTTAAAACAGACTAGAATTGAACGTCTACCC

                                   *                     
        795 TCAGAAACATGAAA-AA-AAAAGTATTCACTGGCAAGAAAAATCC
        130 TCAGAAACAT-AAAGAAGAAAA-CATTCACTGGCAAGAAAAATCC

                     *   *  *                   *                      
        838 ATTTATAGTAACCGATACCTTCAAAAGCATTT-TTACTCACTTTAAATAGTTTTGTAAT
          1 ATTTATAGTCACCCATTCCTTCAAAAGC-TTTATTAATCACTTTAAATAGTTTTGTAAT

        896 GNNNNNNNNN


Statistics
Matches: 190,  Mismatches: 36, Indels: 8
        0.81            0.15        0.03

Matches are distributed among these distances:
 171    3  0.02
 172  174  0.92
 173   13  0.07

ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37


Consensus pattern (172 bp):   
ATTTATAGTCACCCATTCCTTCAAAAGCTTTATTAATCACTTTAAATAGTTTTGTAATCTCAAAA
TTGATTTAAAGTTCAATTTTTGAACAGTTTCTAGTTAAAACAGACTAGAATTGAACGTCTACCCT
CAGAAACATAAAGAAGAAAACATTCACTGGCAAGAAAAATCC
Done.