Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401104.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4261.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 933

Length: 1556
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.27

Warning! 516 characters in sequence are not A, C, G, or T


Found at i:1433 original size:171 final size:171

Alignment explanation


    Indices: 1134--1553  Score: 504
    Period size: 171  Copynumber: 2.5  Consensus size: 171

       1124 NNCGCTCATA

                 *      *       *                    *                       
       1134 CCTTCGAAAGCCTTATTACTTACTTTCAA-AGGCTTTATAACCTCATAATTGATTTTAAGTTGAA
          1 CCTTCAAAAGCCGTATTACTCACTTTCAATA-GCTTTATAATCTCATAATTGATTTTAAGTTGAA

                                *                    *  *        *           
       1198 TTTATTTACA-TTTTTAGTTGAAACAGATAATAATTAAATGTCTGCCTCAAGAGACGTAAAGAAA
         65 -TTATTTACATTTTTTAGTTAAAACAGATAATAATTAAATGCCTACCTCAAGAAACGTAAAGAAA

                             *       *           *     
       1262 AAGATATCCATTGACAAGAAAAGTCTATTTATAATAAGCCATG
        129 AAGATATCCATTGACAACAAAAGTCCATTTATAATAACCCATG

                     * **             *     *          *     **      *       
       1305 CCTTCAAAATCTTTATTACTCACTTTGAATAGTTTTATAATCTTATAATCAATTTTAGGTTGAAT
          1 CCTTCAAAAGCCGTATTACTCACTTTCAATAGCTTTATAATCTCATAATTGATTTTAAGTTGAAT

              *                         *                         *  *       
       1370 TCGTTTACATTTTTTA-TTAAAACAGATTATAATTAAATGCCTACCTCAAGAAATGTGAAGAAAA
         66 T-ATTTACATTTTTTAGTTAAAACAGATAATAATTAAATGCCTACCTCAAGAAACGTAAAGAAAA

                        *                   * **      
       1434 AGATATCCATTGGCAACAAAAGTCCATTTATAGTCTCCCATG
        130 AGATATCCATTGACAACAAAAGTCCATTTATAATAACCCATG

                 *              *         *                                  
       1476 CCTTCGAAAGCCGTATTACTTACTTTCAATGGCTTTATAATCTCATAATTGATTTTAAGTTGAAT
          1 CCTTCAAAAGCCGTATTACTCACTTTCAATAGCTTTATAATCTCATAATTGATTTTAAGTTGAAT

             *           
       1541 TTTTTACATTTTT
         66 TATTTACATTTTT

       1554 AGT


Statistics
Matches: 207,  Mismatches: 39, Indels: 7
        0.82            0.15        0.03

Matches are distributed among these distances:
 170   13  0.06
 171  187  0.90
 172    7  0.03

ACGTcount: A:0.35, C:0.15, G:0.11, T:0.38


Consensus pattern (171 bp):   
CCTTCAAAAGCCGTATTACTCACTTTCAATAGCTTTATAATCTCATAATTGATTTTAAGTTGAAT
TATTTACATTTTTTAGTTAAAACAGATAATAATTAAATGCCTACCTCAAGAAACGTAAAGAAAAA
GATATCCATTGACAACAAAAGTCCATTTATAATAACCCATG
Done.