Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401105.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4262.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3112
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.21

Warning! 1433 characters in sequence are not A, C, G, or T


Found at i:2116 original size:21 final size:21

Alignment explanation


    Indices: 2074--2116  Score: 50
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2064 TCTCTCATTC

                          *  *   
       2074 CTTTAAAAGCTTTTTTACTCT
          1 CTTTAAAAGCTTTTATAATCT

                   * *           
       2095 CTTTAAATGGTTTTATAATCT
          1 CTTTAAAAGCTTTTATAATCT

             
       2116 C
          1 C

       2117 ANNNNNNNNN


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.26, C:0.16, G:0.07, T:0.51


Consensus pattern (21 bp):   
CTTTAAAAGCTTTTATAATCT

Found at i:3090 original size:21 final size:21

Alignment explanation


    Indices: 3048--3090  Score: 50
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3038 TCTCCTATTC

                             *   
       3048 CTTTAAAAGCTTTAATACTCT
          1 CTTTAAAAGCTTTAATAATCT

                   * *   *       
       3069 CTTTAAATGGTTTTATAATCT
          1 CTTTAAAAGCTTTAATAATCT

             
       3090 C
          1 C

       3091 AAAATTGATT


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.30, C:0.16, G:0.07, T:0.47


Consensus pattern (21 bp):   
CTTTAAAAGCTTTAATAATCT
Done.