Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401106.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4263.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 697

Length: 1163
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.16

Warning! 652 characters in sequence are not A, C, G, or T


Found at i:937 original size:29 final size:29

Alignment explanation


    Indices: 895--950  Score: 112
    Period size: 29  Copynumber: 1.9  Consensus size: 29

        885 NNNNNAAAGT

                                         
        895 TAATTTATAGACATTCATGCCTTAGAAAC
          1 TAATTTATAGACATTCATGCCTTAGAAAC

                                       
        924 TAATTTATAGACATTCATGCCTTAGAA
          1 TAATTTATAGACATTCATGCCTTAGAA

        951 GCCCTTATTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   27  1.00

ACGTcount: A:0.38, C:0.16, G:0.11, T:0.36


Consensus pattern (29 bp):   
TAATTTATAGACATTCATGCCTTAGAAAC
Done.