Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401109.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4267.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2239
ACGTcount: A:0.24, C:0.08, G:0.09, T:0.24

Warning! 787 characters in sequence are not A, C, G, or T


Found at i:721 original size:171 final size:171

Alignment explanation


    Indices: 427--752  Score: 395
    Period size: 171  Copynumber: 1.9  Consensus size: 171

        417 NNNNNNNNNN

                   *                    ** *        *                        
        427 CAATTATGAGATTATAAAACTATTTAAAGCGGGTAATAAGGCTTCTGAAGGAATAAGTGACTATA
          1 CAATTATAAGATTATAAAACTATTTAAAAAGAGTAATAAGCCTTCTGAAGGAATAAGTGACTATA

                  *       *         *       * *   *         *                
        492 AATGGATTTTTATTTTCAATGAATGGCTTTTTTTGCATGATTCCTGAGGTAAACATTCAATTATA
         66 AATGGACTTTTATTGTCAATGAATAGCTTTTTCTACATCATTCCTGAGATAAACATTCAATTATA

              *                 *                     
        557 GTTTGTTTTAATA-AAAAATGTAAAAAAATTCTACTTAAAAT
        131 GTCTGTTTTAA-AGAAAAATATAAAAAAATTCTACTTAAAAT

                           *                            *   *     **      *  
        598 CAATTATAAGATTATTAAACTATTTAAAAAGAGTAATAAGCCTTTTGATGGAATTGGTGACTCTA
          1 CAATTATAAGATTATAAAACTATTTAAAAAGAGTAATAAGCCTTCTGAAGGAATAAGTGACTATA

                       *        *                     *         *            
        663 AATGGACTTTTCTTGTCAATTAATAGCTTTTTCTACA-CATTTCTCGAGATACACATTCAATTAT
         66 AATGGACTTTTATTGTCAATGAATAGCTTTTTCTACATCATTCCT-GAGATAAACATTCAATTAT

            *                         
        727 TGTCTGTTTTAAAGAAAAATATAAAA
        130 AGTCTGTTTTAAAGAAAAATATAAAA

        753 NNNNNNNNNN


Statistics
Matches: 128,  Mismatches: 25, Indels: 4
        0.82            0.16        0.03

Matches are distributed among these distances:
 170    6  0.05
 171  122  0.95

ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38


Consensus pattern (171 bp):   
CAATTATAAGATTATAAAACTATTTAAAAAGAGTAATAAGCCTTCTGAAGGAATAAGTGACTATA
AATGGACTTTTATTGTCAATGAATAGCTTTTTCTACATCATTCCTGAGATAAACATTCAATTATA
GTCTGTTTTAAAGAAAAATATAAAAAAATTCTACTTAAAAT
Done.