Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401114.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4271.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 756

Length: 1261
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.20

Warning! 560 characters in sequence are not A, C, G, or T


Found at i:468 original size:172 final size:172

Alignment explanation


    Indices: 212--641  Score: 496
    Period size: 172  Copynumber: 2.5  Consensus size: 172

        202 NNNNNNNNNN

                   *  *      *   *            *           *                  
        212 TTTTTAATATTTTTGGTTAAAGCAGACTACAACTAAATGTCTACCTCGAGAAACGTGAAGAAAAA
          1 TTTTTAAAATGTTTGGTAAAAACAGACTACAACTGAATGTCTACCTTGAGAAACGTGAAGAAAAA

              *         *                    *  *           *              * 
        277 AGCATTCATTGGTAAGAAAAGCTT-ATTTATAGTC-TCC-TCTTCTTTTAAAAGCCTTATTACTC
         66 AGTATTCATTGGCAAGAAAAGCTTCATTTATAGCCACCCAT-TTC-TTAAAAAGCCTTATTACAC

                                   *      *               
        339 GCTTTAAATGGATTTC-TAAACTTAAAATTGATTTTAGGTTCAAGT
        129 GCTTTAAAT-GATTTCATAAACTCAAAATTAATTTTAGGTTCAA-T

                 * *                       *  *           *    *             
        384 TTTTTTACAT-TATTGGTAAAAACAGA-TAATAATTGAATGTCTACTTTGAAAAACGTGAAGAAA
          1 TTTTTAAAATGT-TTGGTAAAAACAGACT-ACAACTGAATGTCTACCTTGAGAAACGTGAAGAAA

                                                                             
        447 AAAGTATTCATTGGCAAGAAAAG-TTCATTTATAGCCACCCATTTCTTAAAAAGCCTTATTACAC
         64 AAAGTATTCATTGGCAAGAAAAGCTTCATTTATAGCCACCCATTTCTTAAAAAGCCTTATTACAC

             *                 *    *               *   
        511 GGTTTAAATGATTTCATAATCTCATAATTAATTTTAGGTTGAAT
        129 GCTTTAAATGATTTCATAAACTCAAAATTAATTTTAGGTTCAAT

                             *    *                               *    *     
        555 TTTTTAAAATGTTTGGTTAAAATAGACTACAACTGAATGTCTACCTTGAGAAACATGAAAAAAAA
          1 TTTTTAAAATGTTTGGTAAAAACAGACTACAACTGAATGTCTACCTTGAGAAACGTGAAGAAAAA

             *                    
        620 AATATTCATTGGCAAGAAAAGC
         66 AGTATTCATTGGCAAGAAAAGC

        642 CCATATATGG


Statistics
Matches: 216,  Mismatches: 33, Indels: 18
        0.81            0.12        0.07

Matches are distributed among these distances:
 171   82  0.38
 172  128  0.59
 173    5  0.02
 174    1  0.00

ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35


Consensus pattern (172 bp):   
TTTTTAAAATGTTTGGTAAAAACAGACTACAACTGAATGTCTACCTTGAGAAACGTGAAGAAAAA
AGTATTCATTGGCAAGAAAAGCTTCATTTATAGCCACCCATTTCTTAAAAAGCCTTATTACACGC
TTTAAATGATTTCATAAACTCAAAATTAATTTTAGGTTCAAT
Done.