Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401116.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4273.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 794

Length: 1324
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.28

Warning! 378 characters in sequence are not A, C, G, or T


Found at i:361 original size:170 final size:170

Alignment explanation


    Indices: 151--558  Score: 428
    Period size: 170  Copynumber: 2.4  Consensus size: 170

        141 NNNNNNNNNN

                   * *          *   *                            *     *     
        151 ATTCATTGGTAAGAAAAGTCTATTAATAGTCACCCATTCCTTCAAAAGTCTTACTACTCGCTTTA
          1 ATTCATTAGAAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGTCTTATTACTCACTTTA

                     *       **                                ***           
        216 AATGGTTTTGGAATCTCTTAATTGATTTTAAGTT-AAATTTTTTACATTTTTTGTTAAAATAGAT
         66 AATGGTTTTAGAATCTCAAAATTGATTTTAAGTTGAAATTTTTTACATTTTAACTTAAAATAGAT

               *              *        *     *      * 
        280 TATCATCGAATGCCTATCTTAG-GAAATGTGTAGAAAAAGCC
        131 TATAATCGAATGCCTA-CCTAGAGAAAAGTG-AAAAAAAGAC

                                            * *              *       ********
        321 ATTCATTTA-AAAGAAAAGTCCATTTATAGTCTCTCATTCCTTCAAAAGCCTTATTNNNNNNNNN
          1 ATTCA-TTAGAAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGTCTTATT-ACTCACTT

            *           *                          *                         
        385 NAAA-GGTTTTATAATCTCAAAATTGATTTTAAGTTGAATTTTTTTACATTTTAACTTAAAATAG
         64 TAAATGGTTTTAGAATCTCAAAATTGATTTTAAGTTGAAATTTTTTACATTTTAACTTAAAATAG

                    *     *      *                    
        449 ATTATAATTGAATGTCTACCTCGAGAAAAGTGAAAAAAAGAC
        129 ATTATAATCGAATGCCTACCTAGAGAAAAGTGAAAAAAAGAC

                     *     *                                                 
        491 ATTCATTAGCAAGAAGAGTCCATTTATAGTCACCCATTCCTTCAAAAGTCTTATTACTCACTTTA
          1 ATTCATTAGAAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGTCTTATTACTCACTTTA

               
        556 AAT
         66 AAT

        559 AGNNNNNNNN


Statistics
Matches: 185,  Mismatches: 47, Indels: 12
        0.76            0.19        0.05

Matches are distributed among these distances:
 169    6  0.03
 170  128  0.69
 171   51  0.28

ACGTcount: A:0.35, C:0.14, G:0.11, T:0.37


Consensus pattern (170 bp):   
ATTCATTAGAAAGAAAAGTCCATTTATAGTCACCCATTCCTTCAAAAGTCTTATTACTCACTTTA
AATGGTTTTAGAATCTCAAAATTGATTTTAAGTTGAAATTTTTTACATTTTAACTTAAAATAGAT
TATAATCGAATGCCTACCTAGAGAAAAGTGAAAAAAAGAC
Done.