Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401125.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4282.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1858
ACGTcount: A:0.21, C:0.06, G:0.09, T:0.22

Warning! 779 characters in sequence are not A, C, G, or T


Found at i:385 original size:171 final size:170

Alignment explanation


    Indices: 1--433  Score: 450
    Period size: 171  Copynumber: 2.6  Consensus size: 170

                                *          *                          *      
          1 GAGACTATAAATGGACTTTTCTTGAT-AATGGATG-CTTTGTTCTTCATGTTTCTTGATGTAAAC
          1 GAGACTATAAATGGACTTTTTTTG-TCAATGAATGCCTTT-TTCTTCATGTTTCTTGAGGTAAAC

                                    *                    *         *         
         64 ATTCAATTA-TAGTCTGTTTTAACGAAAAATGTAAAAAAATTAACTTAAAATCAATTATGAGATN
         64 ATTCAATTATTAGTCTGTTTTAACAAAAAATGTAAAAAAATTAACGTAAAATCAACTATGAGAT-

            *********    *   *  *                      
        128 NNNNNNNNNTTTTTAGCGAGTAATAAGGCTTTTGAAAAAATAA
        128 ATATAAAACTTTTAAGCAAGGAATAAGGCTTTTGAAAAAATAA

                         *           *          *        *                   
        171 GAGACTATAAATGAACTTTTCTTT-CCAATGAATGCTTTTTTCTTTATGTTTCTTGAGGTAAACA
          1 GAGACTATAAATGGACTTTT-TTTGTCAATGAATGCCTTTTTCTTCATGTTTCTTGAGGTAAACA

                                          *                                  
        235 TTCAATTATTA-TCTGTTTTAACAAAAAATTTAAAAAAATTTAACGTAAAATCAACTATGAGAT-
         65 TTCAATTATTAGTCTGTTTTAACAAAAAATGTAAAAAAA-TTAACGTAAAATCAACTATGAGATA

                                              *  *    * 
        298 TATAAAACTATTTAAGGCAAGGAATAAGGCTTTTTAAGAAATGA
        129 TATAAAACT-TTTAA-GCAAGGAATAAGGCTTTTGAAAAAATAA

             *                           *                *  *          *    
        342 GTGACTATAAATGGACTTTTTTTGTCAATAAATGCCTTTTTCTTCAGGTATCTTGAGGTAGACAT
          1 GAGACTATAAATGGACTTTTTTTGTCAATGAATGCCTTTTTCTTCATGTTTCTTGAGGTAAACAT

                           *      *      
        407 TCAATTA-TAGTCT-ATTTAACCAAAAAT
         66 TCAATTATTAGTCTGTTTTAACAAAAAAT

        434 ANNNNNNNNN


Statistics
Matches: 218,  Mismatches: 36, Indels: 18
        0.80            0.13        0.07

Matches are distributed among these distances:
 169    1  0.00
 170  103  0.47
 171  114  0.52

ACGTcount: A:0.36, C:0.11, G:0.13, T:0.37


Consensus pattern (170 bp):   
GAGACTATAAATGGACTTTTTTTGTCAATGAATGCCTTTTTCTTCATGTTTCTTGAGGTAAACAT
TCAATTATTAGTCTGTTTTAACAAAAAATGTAAAAAAATTAACGTAAAATCAACTATGAGATATA
TAAAACTTTTAAGCAAGGAATAAGGCTTTTGAAAAAATAA
Done.