Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018401131.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4288.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1097
ACGTcount: A:0.29, C:0.09, G:0.10, T:0.29

Warning! 248 characters in sequence are not A, C, G, or T


Found at i:817 original size:171 final size:171

Alignment explanation


    Indices: 521--838  Score: 372
    Period size: 171  Copynumber: 1.9  Consensus size: 171

        511 NNNNNNNNNN

                        *       **                                           
        521 AGGAATGGGTGATTATAAATGGACTTTTCTTACCAATGAATACCTTTTTCTTTACGTTTCTAGAA
          1 AGGAATGGGTGACTATAAATAAACTTTTCTTACCAATGAATACCTTTTTCTTTACGTTTCTAGAA

               *          * **       *                  *    **              
        586 ATTGACATTCAATTGTTGTCTATTTTAACTAAAAATGTAAAAAACTTCACCTGAAAATCAATTAT
         66 ATTAACATTCAATTATAATCTATTTGAACTAAAAATGTAAAAAAATTCAAATGAAAATCAATTAT

                                                      
        651 G-GCATTATAAAACCATTTAAATCGAGTAATGATGTTTTTGA
        131 GAG-ATTATAAAACCATTTAAATCGAGTAATGATGTTTTTGA

                                   *       *      *  *             *    * *  
        692 AGGAATGGGTGACTATAAATAAATTTTTCTTGCCAATGTATGCCTTTTTCTTCT-TGTTTTTGGA
          1 AGGAATGGGTGACTATAAATAAACTTTTCTTACCAATGAATACCTTTTTCTT-TACGTTTCTAGA

             *                    *                               **         
        756 AGTTAACATTCAATTATAATCTGTTTGAAC-AAAAATGTAAAAAGAATTCAAATTTAAATCAATT
         65 AATTAACATTCAATTATAATCTATTTGAACTAAAAATGTAAAAA-AATTCAAATGAAAATCAATT

            *             *    
        820 TTGAGATTATAAAATCATT
        129 ATGAGATTATAAAACCATT

        839 AAAAATGACT


Statistics
Matches: 120,  Mismatches: 24, Indels: 6
        0.80            0.16        0.04

Matches are distributed among these distances:
 170   13  0.11
 171  105  0.88
 172    2  0.02

ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39


Consensus pattern (171 bp):   
AGGAATGGGTGACTATAAATAAACTTTTCTTACCAATGAATACCTTTTTCTTTACGTTTCTAGAA
ATTAACATTCAATTATAATCTATTTGAACTAAAAATGTAAAAAAATTCAAATGAAAATCAATTAT
GAGATTATAAAACCATTTAAATCGAGTAATGATGTTTTTGA
Done.