Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_018397641.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5017.0, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2988
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:2353 original size:16 final size:16

Alignment explanation


    Indices: 2332--2368  Score: 58
    Period size: 16  Copynumber: 2.3  Consensus size: 16

       2322 GAAATTAATT

                             
       2332 TTAAATTTAAA-ATAAA
          1 TTAAATTTAAATAT-AA

                            
       2348 TTAAATTTAAATATAA
          1 TTAAATTTAAATATAA

                 
       2364 TTAAA
          1 TTAAA

       2369 ACAAATTTAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  16   18  0.90
  17    2  0.10

ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41


Consensus pattern (16 bp):   
TTAAATTTAAATATAA
Done.