Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_018397292.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_251.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 480488
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.30
Warning! 70979 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:2982 original size:27 final size:27
Alignment explanation
Indices: 2952--3006 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
2942 GATGGAAAGC
2952 TCTCTTGGACTGTTGAAATACTTCATA
1 TCTCTTGGACTGTTGAAATACTTCATA
2979 TCTCTTGGACTGTTGAAATACTTCATA
1 TCTCTTGGACTGTTGAAATACTTCATA
3006 T
1 T
3007 TTTTCTTGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (27 bp):
TCTCTTGGACTGTTGAAATACTTCATA
Found at i:15272 original size:171 final size:171
Alignment explanation
Indices: 14956--15335 Score: 448
Period size: 171 Copynumber: 2.2 Consensus size: 171
14946 AAATTTTTTT
* * * *
14956 TTTCA-TTTTGGTTAAAATATATCGTAATTGGATGTTTGCATTGAGAAACGTGAACTAAAAGCCA
1 TTTCATTTTTGATTAAAACATATCATAATTGGATGTTTGCATTGAGAAACATGAACTAAAAGCCA
* * **
15020 TTCATTGATGAGAAAAGTCCATTTATAGTCACTAATGCCTTTGAAAGCCTTGTAACTCGCTTTAA
66 TTCATTGACGAGAAAAGTCCATTTATAGTCACTAATGCCTTAGAAAGCCTAATAACTCGCTTTAA
* ** * *
15085 ATGGATTCTTAATCTTATAAATAATTTTAAAT-TGAATTTT
131 ATGGATTCTTAATCTTATAAATAACTTTAAATCAAAATCTC
* * *
15125 TGTTCATTTTTTATTAAAACATATCATAATTGGATGTTTGCA-TGGGCAAACATGAAGC-GAAAG
1 T-TTCATTTTTGATTAAAACATATCATAATTGGATGTTTGCATTGAG-AAACATGAA-CTAAAAG
* ** ** *
15188 CCATTCATTGACGAGAAAAGTCCATTTATAGTCACTCATGTGTTAGAAAGCCTAATTTCTTGCTT
63 CCATTCATTGACGAGAAAAGTCCATTTATAGTCACTAATGCCTTAGAAAGCCTAATAACTCGCTT
* *
15253 TAAATTG-TT-TTACAATCTTATAAATGACTTTAAATCAAAATCTC
128 TAAATGGATTCTT--AATCTTATAAATAACTTTAAATCAAAATCTC
*
15297 TTTCATTTTTGACTAAAACATATCATAATTGGATGTTTG
1 TTTCATTTTTGATTAAAACATATCATAATTGGATGTTTG
15336 GATTCGAAAA
Statistics
Matches: 178, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
169 3 0.02
170 9 0.05
171 160 0.90
172 6 0.03
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (171 bp):
TTTCATTTTTGATTAAAACATATCATAATTGGATGTTTGCATTGAGAAACATGAACTAAAAGCCA
TTCATTGACGAGAAAAGTCCATTTATAGTCACTAATGCCTTAGAAAGCCTAATAACTCGCTTTAA
ATGGATTCTTAATCTTATAAATAACTTTAAATCAAAATCTC
Found at i:29179 original size:169 final size:163
Alignment explanation
Indices: 28830--29314 Score: 400
Period size: 170 Copynumber: 2.9 Consensus size: 163
28820 GAGGTGTTAC
* *
28830 AAAGTCCATTTATTGTCAGTCATGCCT-TCGAAAGCC--TTACTTGATTTAAATAGTTTTATAAT
1 AAAGTCCATTTATTGTC--TCATG-CTATCGAAAGCCTTTTACTTGCTTTAAATGGTTTTATAAT
* * *
28892 CTTATAAATAATTTTAAATTAAA--TATTTGTTATTGGTAATGAAAATCAGTCA-TAATCA-TAT
63 CTTATAAATAATTTT-AATAAAATCTTTTTGTTATTGGT--T-AAAA-CA-T-ATTAATTAGTAT
* * *
28953 ATTTGTATTGGGAAACATGCGTAGCGAATGTCATCCATTGACAAG
121 GTTTGCATTGGGAAACAT--GAAGCGAATGTCATCCATTGACAAG
28998 AAAGTCCATTTATTGTCTCATGCTATCGAAAGCCTTGTTACTTGCTTTAAATGGTTTTATAATCT
1 AAAGTCCATTTATTGTCTCATGCTATCGAAAGCCTT-TTACTTGCTTTAAATGGTTTTATAATCT
* *
29063 TATAAAAAATTTTAAGTCAAAATCTTTTTTGTTATTGGTTAAAACATATTACATTTGTATGTTTG
65 TATAAATAATTTTAA-T-AAAATC-TTTTTGTTATTGGTTAAAACATATTA-ATTAGTATGTTTG
* * *
29128 CATTGGGAAACATGAAGCGGATG-CTATCTATTGACAAAT
126 CATTGGGAAACATGAAGCGAATGTC-ATCCATTGAC-AAG
* * * * * * *
29167 AAAGTTCATTTATGGTCACTCATGCCATC-AAAGGCCTTATAACTCGCTTAAAATGGTATTATAA
1 AAAGTCCATTTATTGT--CTCATGCTATCGAAA-GCCTT-TTACTTGCTTTAAATGGTTTTATAA
* * * * *
29231 T-TTATAAATGATTTTCAATTGAATTCCTTTTTGTTTTTGATTAAAACATATCGTAATTAG-ATG
62 TCTTATAAATAATTTT-AA-TAAAAT-CTTTTTGTTATTGGTTAAAACATAT--TAATTAGTATG
29294 TTTGCATTGAGG-AACATGAAG
122 TTTGCATTG-GGAAACATGAAG
29315 TTGAAGCCAT
Statistics
Matches: 266, Mismatches: 29, Indels: 42
0.79 0.09 0.12
Matches are distributed among these distances:
165 2 0.01
166 14 0.05
167 2 0.01
168 39 0.15
169 59 0.22
170 87 0.33
171 48 0.18
172 2 0.01
173 13 0.05
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (163 bp):
AAAGTCCATTTATTGTCTCATGCTATCGAAAGCCTTTTACTTGCTTTAAATGGTTTTATAATCTT
ATAAATAATTTTAATAAAATCTTTTTGTTATTGGTTAAAACATATTAATTAGTATGTTTGCATTG
GGAAACATGAAGCGAATGTCATCCATTGACAAG
Found at i:31660 original size:170 final size:166
Alignment explanation
Indices: 28988--32789 Score: 875
Period size: 170 Copynumber: 22.5 Consensus size: 166
28978 GAATGTCATC
* * * * * * *
28988 CATTGACAAG-AAAGTCCATTTATTGTC--TCATGCTATCGAAAGCCTTGTTACTTGCTTTAAAT
1 CATTGACAAGAAAAGTTCATTTATAGTCATTCATACTTTCGAAATCC-TATTACTCGCTTTAAAT
** * ** *
29050 GGTTTTATAATCTTATAAAAAATTTTAAGTCAAAATCTTTTTTGTTATTGGTTAAAACATATTAC
65 GGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATT-TTGGTT--AACATAAT-C
* * ** *
29115 AT--TTGTATGTTTGCATTGGGAAACATGAAGCGGATGCTAT
126 ATAATTGGATGTTTGCATTAGGAAACATGAAGCAAATCCT-T
* * * ** * * *
29155 CTATTGACAA-ATAAAGTTCATTTATGGTCACTCATGCCATC-AAAGGCCTTATAACTCGCTTAA
1 C-ATTGACAAGA-AAAGTTCATTTATAGTCATTCATACTTTCGAAA-TCC-TATTACTCGCTTTA
* * ** * ** *
29218 AATGGTATTATAAT-TTATAAATGATTTTCAATTGAATTCCTTTTTGTTTTTGATTAAAACAT-A
62 AATGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT-CTTTTTCATTTTGGTT--AACATAA
* * ** *
29281 TCGTAATTAGATGTTTGCATTGAGG-AACATGAAGTTGAAGCCATT
124 TCATAATTGGATGTTTGCATT-AGGAAACATGAAG-CAAATCC-TT
* * * * * * * * *
29326 CATTGATAAGAAAAG-TCTAGATT-TAGTCAGTT-TTACCTTCAAAAGCATCATTACACACTTTA
1 CATTGACAAGAAAAGTTC-A-TTTATAGTCA-TTCATACTTTCGAAATCCT-ATTACTCGCTTTA
* * * * *
29388 TATGATTTTATAATCTTATAAATGATTTTAAATCAAAAT-TTATTTTATTTTTGCTTAAAATCAA
62 AATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTTCA-TTTTGGTTAACAT-AA
* * ** *
29452 TCATTATTGGATGTTTGCATCAGGAAACATGAAGCGGATGCCAT
124 TCATAATTGGATGTTTGCATTAGGAAACATGAAGCAAAT-CCTT
* * * * * * * * * * * * * * *
29496 CATTTAGAAGAAAAGTCCATTTATACTTACTCATGCCATT-AAAAGCTTTGTTACTTGCTTTCAC
1 CATTGACAAGAAAAGTTCATTTATAGTCATTCAT-ACTTTCGAAATC-CTATTACTCGCTTTAAA
* * * * * * *
29560 TGGTTTTCTAATCTTATAAATGGTTTTAAATCAGAATC-----C-TTTT-TTTAAAATTGATCAC
64 TGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTGGTTAACA-TAATCAT
* * * **
29618 AATTGGATGTTTTCCTTGGGAAACATGAAGTGAATGCCATT
128 AATTGGATGTTTGCATTAGGAAACATGAAGCAAAT-CC-TT
* * * * * * * * * * *
29659 GATTGATAA-AAAAGTCCATTTATAGTTACTCGT-GTCTTCAAAAACTTAGTTACTCACTTTAAA
1 CATTGACAAGAAAAGTTCATTTATAGTCATTCATACT-TTCGAAATCCTA-TTACTCGCTTTAAA
* * * * * * *
29722 TGTTTTTATAATCTTATAAATGTTTTTAAACCGAAATCTTTTT-AGTTTTAGCTTGAAACA-GAG
64 TGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCA-TTTT-GGTT--AACATAAT
* * * * * *
29785 CATAATTGTATGCTTGTATCCA--AAACCATG-AGACAGATGCCATC
125 CATAATTGGATGTTTGCAT-TAGGAAA-CATGAAG-CAAAT-CC-TT
* * * * ** * * * * * * *
29829 CATTGATAGGAAAAGTCCACTTATTTTCAATCATGCATTCTAAAGCCTTGTTACTCGATTTAAAT
1 CATTGACAAGAAAAGTTCATTTATAGTCATTCATACTTTCGAAATCC-TATTACTCGCTTTAAAT
* * * * * * *
29894 GGTTTTATATTCTTATAAATTATTTTAAAT-TAAAT-GTTTT-ATGTTCATAGCTAGA-ATCTAT
65 GGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCAT-TT--TGGTTA-ACAT-AAT
** * * ** * * ** * *
29955 CATAATTATATATTTTCATCGGGAAACATGCAGTGGATGTCATC
125 CATAATTGGATGTTTGCATTAGGAAACATG-A-AGCAAATCCTT
* * * * * *
29999 CATTAACAAG-AAAG-TCTATTTATAGTC-TCTCATTCTATCGAAAGTCTTGTTACTCACTTTAA
1 CATTGACAAGAAAAGTTC-ATTTATAGTCAT-TCATACTTTCGAAA-TCCTATTACTCGCTTTAA
* * ** * *
30061 ATAGTTTGATAATCTTATAAATGATTTTAAATTGAAAT-TATTTTCATTGTTGGTTAAAATTGAT
63 ATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCT-TTTTCATT-TTGGTTAACA-TAAT
* * * * * * * * * *
30125 CATAAGTGAATTTTTACATTAGAAAACATAAAACGATTACCATC
125 CATAATTGGATGTTTGCATTAGGAAACATGAAGCAAAT-CC-TT
* * * * * ** * * *
30169 CATTGACAAGAAAAGTCCATTTATAGCCACTCATGCCTTAAAAAGCCTAGTTAGTCACTTTAAAT
1 CATTGACAAGAAAAGTTCATTTATAGTCATTCATACTTTCGAAATCCTA-TTACTCGCTTTAAAT
* * * * ** * * *
30234 TGTTTCATAATCTTATAAATGAGTTTAAAAT-GAAATCTTTCTTGGTTTTGGTTAAAACAGATTA
65 GGTTTTATAATCTTATAAATGA-TTTTAAATCAAAATCTTT-TTCATTTTGGTTAACATA-ATCA
* * * * *
30298 CATTTGGATG-TTGCA-TAGAGAAACGTGGAGCAAAAGT-CAT
127 TAATTGGATGTTTGCATTAG-GAAACATGAAGC-AAA-TCCTT
* * * * * * * * * * *
30338 CTGTTGAGAAGAAAAGTCCATTTATAGTCAATCATGCCTTCGAAAGCCTCGTTACCCACTTCAAA
1 C-ATTGACAAGAAAAGTTCATTTATAGTCATTCATACTTTCGAAATCCT-ATTACTCGCTT-TAA
* * * *** *
30403 AT-GTTTCATAA-CATTATAAATTATTTTAAATCCAAATCTTTTAGTTTTTGATT-ACAATCAAT
63 ATGGTTTTATAATC-TTATAAATGATTTTAAATCAAAATCTTTTTCATTTTGGTTAAC-AT-AAT
* * * * * *
30465 CATAGTAT-GA-G---G-TTTA--CAACATGAAGCGGATTCCATC
125 CATAAT-TGGATGTTTGCATTAGGAAACATGAAGC-AAATCC-TT
* * * * * * *
30502 CAATGACAAGAAAAGTTCATTTATAGTCACTCATGCTATAGAAAGCCTAATTACTCGATTTAAAT
1 CATTGACAAGAAAAGTTCATTTATAGTCATTCATACTTTCGAAATCCT-ATTACTCGCTTTAAAT
* * * ** * * * * *
30567 GATTTTATAATCTTATAAATAATTTTAAATTGAATTTTTTTTTGCTTTTTGATTAAAAATGATCA
65 GGTTTTATAATCTTATAAATGATTTTAAA-TCAAAATCTTTTT-CATTTTGGTT-AACATAATCA
* * * * * ** * * *
30632 TATTTGGATGCTTACAATGGGAAATGTAAAGCAAATGTCATC
127 TAATTGGATGTTTGCATTAGGAAACATGAAGCAAA--TCCTT
* * * * * *
30674 CATTGGCAGGAAAAG-TCTTTTTATAGTCACTT-ATGGC-TTC--AATGGTCTAATTACTCACTT
1 CATTGACAAGAAAAGTTC-ATTTATAGTCA-TTCAT-ACTTTCGAAAT--CCT-ATTACTCGCTT
* * * *
30734 TAAATGGTTTTGTAATCTTATAAATGATTTGAAATCAAAATCTTTTTTATTTTTGGTTAAGATCA
60 TAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCA-TTTTGGTTAACAT-A
* *
30799 ATCATAATTGGATGTTTGCATT-GGAAAACATGATGCAAATGCTAT
123 ATCATAATTGGATGTTTGCATTAGG-AAACATGAAGCAAATCCT-T
* * * * * * * *
30844 CGAATGGCAAGAAAAGTCCATTTATAGTCATTGATGCCATT--AAAGCCCT-TGTCACTTG-TTT
1 C-ATTGACAAGAAAAGTTCATTTATAGTCATTCAT-ACTTTCGAAA-TCCTAT-T-ACTCGCTTT
* * ** * * *
30905 GAATTGGCTTTATAATCTTATAAATGATTTTAAAT-TGAAT-TTATTTTATTTTTGATTAAGATA
61 -AAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTTCA-TTTTGGTTAACATA
* * * ** * * * *
30968 GATCATAGTTAGATGTTTGCATTAGCAAATGTGAAGTGATAGCCATC
123 -ATCATAATTGGATGTTTGCATTAGGAAACATGAAG-CAAATCC-TT
* * * * * * * *
31015 CATTGACAAGAAAAG-TCTGTTTATAGTCACTCATGCCTTCGAAAGCGTAAATACTCACTTTAAA
1 CATTGACAAGAAAAGTTC-ATTTATAGTCATTCATACTTTCGAAATCCT-ATTACTCGCTTT---
* * * * ** * *
31079 CCAAAT-GTTTTATAATCTTATAATTGATATTAAA-CCAAATGTTTTTTGTTTTCAGTTAAAATA
61 --AAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTT-GGTTAACATA
* * * * * ** * *
31142 GATTACATTTAGATGTTTGCA-TCGAGAAATGTGAAGCGAAAGCCATC
123 -ATCATAATTGGATGTTTGCATTAG-GAAACATGAAGC-AAATCC-TT
* * * * * * * * * * * * *
31189 CTTTCAAAAGAATAGTTCGTGTATAGTCAATAATGCCTTCGAAAGCCTCGTTATTCGCTTTAAAT
1 CATTGACAAGAAAAGTTCATTTATAGTCATTCATACTTTCGAAATCCT-ATTACTCGCTTTAAAT
* * ** * * * *
31254 GGTGTTATAGTCTTATAAATGATTTTAAAGGAAAATTCTTTTT-GTTTTCAGTTAAAATCGATCA
65 GGTTTTATAATCTTATAAATGATTTTAAATCAAAA-TCTTTTTCATTTT-GGTTAACAT-AATCA
* * * * * *
31318 TAATTAGATGTTCT-TATTAGGAAACGTGAAGTAGATCTTAAT
127 TAATTGGATGTT-TGCATTAGGAAACATGAAGCAAATCCT--T
* * ** * *
31360 CATTGACAAGAAATG-TCTATTTATAGTCA-TCATGCCATCGAAAACCCTATTACTTGCTTTAAA
1 CATTGACAAGAAAAGTTC-ATTTATAGTCATTCATACTTTCG-AAATCCTATTACTCGCTTTAAA
** * ** * **
31423 TGGTTTTATAATCAAATAAATTATTCAAAATCGAAATCTTTTTCATTTTTACTTTGAACAT-ATC
64 TGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCA-TTTT-GGTT-AACATAATC
* * ** *
31487 ATAATTGGATCTTGGCATT-GGAGAATGTGAAGTGAAAGTCCTT
126 ATAATTGGATGTTTGCATTAGGA-AACATGAAG-CAAA-TCCTT
* * * *
31530 CATAGACAAGAAAAGTTCATTTATAGTCATTTC-TTCTTTCGAAATCCTAGTTACTTGCATTAAA
1 CATTGACAAGAAAAGTTCATTTATAGTCA-TTCATACTTTCGAAATCCTA-TTACTCGCTTTAAA
* *
31594 TTGATTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTGGTTAACATCAATCAT
64 TGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTGGTTAACAT-AATCAT
*
31659 AATTGGATGTTTTCATTAGGAAACATGAAGCAAATGCCTT
128 AATTGGATGTTTGCATTAGGAAACATGAAGCAAAT-CCTT
* * * ** * * **
31699 TATTGATAAGAAAAGTCCATTTATAGTCATTCATACCATCGAAAGCCTTGTTACTCGCTCAAAAT
1 CATTGACAAGAAAAGTTCATTTATAGTCATTCATACTTTCGAAATCC-TATTACTCGCTTTAAAT
* * * * ** ** * *
31764 GGTATTATAATCTTATAAATAATTTTAAATCAAAATATTCTTGTTTTTTATTAAAATTGATCATA
65 GGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTGGTTAACA-TAATCATA
* * * *
31829 AGTGGATGTTTGCATCAAGAAACATGAAGCAAAACCTAT
129 ATTGGATGTTTGCATTAGGAAACATGAAGCAAATCCT-T
* * * * * *
31868 CCATTGGCAAGAAAACTTTATTTATAGTTAGTCATGCCTTT-GAAATCCCTATTACTCGCTTTAA
1 -CATTGACAAGAAAAGTTCATTTATAGTCATTCAT-ACTTTCGAAAT-CCTATTACTCGCTTTAA
* * * *
31932 ATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTTCTTTTTGGTTAAAAGAATCA
63 ATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTTCATTTTGGTTAACATAATCA
** *** *
31997 TAATTGGATGTTTGCATTAGGAAATGTGAAGTGTATGCCATC
127 TAATTGGATGTTTGCATTAGGAAACATGAAGCAAAT-CC-TT
* ** * * * * * * * * **
32039 CATCGGTAAGAAATA-TGCTTTTATATGTCATGC---CTTT-AAAAGCATTGTTATTCATTTTAA
1 CATTGACAAGAAA-AGTTCATTTATA-GTCATTCATACTTTCGAAATC-CTATTACTCGCTTTAA
* * * * * * *
32099 ATGGTATTATAATCTTCTAAATGATTTTAAATCAAAATATATTTT-GTTCATAGTTAAAATCAAT
63 ATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCT-TTTTCATT-TTGGTTAACAT-AAT
* * * * * *
32163 CATAATTGGATATTTGCATTAGTAAACGTGAAGTAGAT-GTGAT
125 CATAATTGGATGTTTGCATTAGGAAACATGAAGCAAATCCT--T
* * * * * * * * * * ** *
32206 CCATTAACAAG-ATAGTCCATTTATAGTCGTTTATACTATCAAAAGCCTTCTTATTCAATTCAAA
1 -CATTGACAAGAAAAGTTCATTTATAGTCATTCATACTTTCGAAATCC-TATTACTCGCTTTAAA
* * * ** * * * *
32270 TGATTTTATAATCTTACAAATGATTCTAAATTGAAATATTTTTCCTTTTTAGTTAAAATCAATCA
64 TGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTT-CATTTTGGTTAACAT-AATCA
* * * * *
32335 TAAGTGCATTTTTGCATTGGGAAACATGAAGCAAATGCCAT
127 TAATTGGATGTTTGCATTAGGAAACATGAAGCAAAT-CCTT
* * * * * *
32376 CAATTAACAAGAAAAG-TC---CAT--TCA-T-GT-CTTT-GAAAGCCCAATTGCTCGCTTTAAA
1 C-ATTGACAAGAAAAGTTCATTTATAGTCATTCATACTTTCGAAA-TCCTATTACTCGCTTTAAA
* * * * * * * * *
32431 TGGCTTTATAATCATATAAATGATTTCAAA-CTGAACTCTTCTTGATTTTTGCCTAAAACA-AAT
64 TGGTTTTATAATCTTATAAATGATTTTAAATC-AAAATCTTTTTCA-TTTTG-GT-TAACATAAT
* * * * * *
32494 CATAATTAGATG-TTGCATCAAGAAACGTGGAA-CGAATGCCAT
125 CATAATTGGATGTTTGCATTAGGAAACAT-GAAGCAAAT-CCTT
* * * * * * *
32536 CTATTGATAAGAAAAGTCCAATTGTAGTCATTC-T-CTTGTCATCGAAAGCCTTGTTAGTTC-CT
1 C-ATTGACAAGAAAAGTTCATTTATAGTCATTCATAC-T-T--TCGAAATCC-TATTA-CTCGCT
* * * * **
32598 CTAAATGCTTTTAT-ATTTTACAAATGATTTTAAATCAAAATCTCTTTTGTTTTTGGTTAAAACA
59 TTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCT-TTTTCATTTTGGTT--AACA
* * * * * * *
32662 -AATGATAATAGGATGTTTGCATCATGAAACATGAAGTAGAAGCCATC
121 TAATCATAATTGGATGTTTGCATTAGGAAACATGAAGCA-AATCC-TT
* * * * * *
32709 CATTGATAAGAAAAGTTCATTTATAGTCAATCACGAC-TTCAAAAGCCTTATAACTCGCTTTAAA
1 CATTGACAAGAAAAGTTCATTTATAGTCATTCA-TACTTTCGAAATCC-TATTACTCGCTTTAAA
32773 T-GTATTTATAATCTTAT
64 TGGT-TTTATAATCTTAT
32790 CTATTATTTT
Statistics
Matches: 2682, Mismatches: 710, Indels: 482
0.69 0.18 0.12
Matches are distributed among these distances:
160 34 0.01
161 67 0.02
162 121 0.05
163 95 0.04
164 12 0.00
165 21 0.01
166 17 0.01
167 81 0.03
168 77 0.03
169 309 0.12
170 894 0.33
171 616 0.23
172 193 0.07
173 17 0.01
174 120 0.04
175 8 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (166 bp):
CATTGACAAGAAAAGTTCATTTATAGTCATTCATACTTTCGAAATCCTATTACTCGCTTTAAATG
GTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTGGTTAACATAATCATAAT
TGGATGTTTGCATTAGGAAACATGAAGCAAATCCTT
Found at i:33807 original size:170 final size:168
Alignment explanation
Indices: 32987--34029 Score: 724
Period size: 170 Copynumber: 6.1 Consensus size: 168
32977 GATGTTGCAA
* * * * * * *
32987 AAGCCATCTAGTGACAAGAAAAGTCCATTTATAATCAGTCATGTCTTCGAAAGCCTCGTTACTTG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAGTCATGCCTTCGAAAGCCT-ATTAATCG
* * *
33052 CTTTATA-GTTTTATAAACTTATAAATGATTTTTAATCAAAATCTTTTTCCTTTTTGGTTAAAAT
65 CTTTAAATGTTTTATAATCTTATAAATGATTTTTAATCAAAATCTTTTTCGTTTTT-GTTAAAAT
*
33116 CAATCATAATTCGATGTTTGCATCAGGAAACATGAAGCA-
129 CAATCATAATTGGATGTTTGCATCAGGAAACATGAAGCAG
* * * * * *
33155 AATGCCATTCATTGACAAGAAAAGTGCATTTATAGTCACTTTTATGTCATT-GAAAGCCTTGTTA
1 AA-GCCATCCATTGACAAGAAAAGTCCATTTATAGTCA--GTCATG-CCTTCGAAAGCC-TATTA
* * * * *
33219 ATTGCTTTAATTGCTTTTGT-ATTTTATAAATGGA--TTTAGATCAAAATCTTTTTCATTTTTTG
61 ATCGCTTTAAATG-TTTTATAATCTTATAAAT-GATTTTTA-ATCAAAATCTTTTTC-GTTTTTG
* * *
33281 TTAAAA-CAAATCATAATTGGATGTTTCCATCAAGAAACGTGAAGCAG
122 TTAAAATC-AATCATAATTGGATGTTTGCATCAGGAAACATGAAGCAG
* * * * * * *
33328 AAGCTATCCATTCACAAGAAAAGTCAATTTATAGTCAGTCCTGCC-ACAAAAGCCTTTTAAATCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAGTCATGCCTTCGAAAGCCTATT-AATCG
* * *** * * *
33392 CTTTAAATGGTTTTACAATCTTATAAAT-AATTTTAAAGGAATTTTTTTTGGTTTTTGTTAAAAT
65 CTTTAAAT-GTTTTATAATCTTATAAATGATTTTTAATCAAAATCTTTTTCGTTTTTGTTAAAAT
* * *
33456 CAATCATAATTGGGTGTTCT-CATTAGGAATCATGAAGCAG
129 CAATCATAATTGGATGTT-TGCATCAGGAAACATGAAGCAG
* * * * * * * * * *
33496 ATGCCATCCATTGACAAGAAATGTCTATTTTTAGACATTTACGCCATCGAAAGCCTAGTTACTCG
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAGTCATGCCTTCGAAAGCCTA-TTAATCG
* ** ** * *
33561 CTTTAAATGTTTTTATAATCATATAAGCGATTTCAAACCGAAATCTTTTTCGTTTTTGCTTAAAA
65 CTTTAAATG-TTTTATAATCTTATAAATGATTTTTAATCAAAATCTTTTTCGTTTTTG-TTAAAA
* ** *
33626 T-AGACCATAATTGGATG-TTGCATTGGGAAACACTG-AG-TG
128 TCA-ATCATAATTGGATGTTTGCATCAGGAAACA-TGAAGCAG
* * * * * *
33665 AAAGCCATCCATTAAGACGAAAAGTCCATTTATAGTCAGTCATACCTTCGAATGCCTCATTAGTC
1 -AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAGTCATGCCTTCGAAAGCCT-ATTAATC
** *
33730 ATTTTAAATGATTTTATAATCTTATAAATGATTTTTAATCAAAATCTTTTTTGTTTTTAGTTAAA
64 GCTTTAAATG-TTTTATAATCTTATAAATGATTTTTAATCAAAATCTTTTTCGTTTTT-GTTAAA
* * * * *
33795 ATCAATCATAATT-AATGTTT-CTATTAAGAAACTTGAAGCGG
127 ATCAATCATAATTGGATGTTTGC-ATCAGGAAACATGAAGCAG
* * * * * * * ** * *
33836 ATGCCATCCATTGATAATAAAAGTCCATTTATAGTCACTTTCTTGTCATAAAAAGCCTTGTTAGT
1 AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCA--GTCATGCCTTCGAAAGCC-TATTAAT
* * * * * * *
33901 TGCTTTACCA-GCCTTTAT-ATTTTATAAATGATTTTCAATCAAAATCTTTTTCATTTTTTATTA
63 CGCTTTA-AATG-TTTTATAATCTTATAAATGATTTTTAATCAAAATCTTTTTC-GTTTTTGTTA
* * * *
33964 AAA-CAGATCATAATTCGATGCTTGCAT-AGAGAAATATAAAGC-G
125 AAATCA-ATCATAATTGGATGTTTGCATCAG-GAAACATGAAGCAG
*
34007 AAAGCCATCCATTGATAAGAAAA
1 -AAGCCATCCATTGACAAGAAAA
34030 AAATCATTTA
Statistics
Matches: 683, Mismatches: 146, Indels: 88
0.74 0.16 0.10
Matches are distributed among these distances:
168 85 0.12
169 105 0.15
170 210 0.31
171 101 0.15
172 165 0.24
173 17 0.02
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37
Consensus pattern (168 bp):
AAGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAGTCATGCCTTCGAAAGCCTATTAATCGC
TTTAAATGTTTTATAATCTTATAAATGATTTTTAATCAAAATCTTTTTCGTTTTTGTTAAAATCA
ATCATAATTGGATGTTTGCATCAGGAAACATGAAGCAG
Found at i:34539 original size:171 final size:169
Alignment explanation
Indices: 34173--34579 Score: 421
Period size: 170 Copynumber: 2.4 Consensus size: 169
34163 CTCATACCAC
* * * * * * *
34173 CAAAAGCATTGTTACTTGCTTTAAATGATTTTATAATCATGTGAATGATTTGAAATCGAAATCTT
1 CAAAAGCATCGTTACTCGCTTTAAATGATTTTATAATCTTATAAATAATTTTAAATC-AAATCTT
* * *
34238 TTTCGATTTTGGTTAAAATAGATCATAATTGGATGTTGTATCGAGAAACGTGAAGTGAAAGGCAT
65 TTTCGATTTTGGTTAAAATAGATCATAATTGAATGTTGTATCGAGAAACGTGAAGCGAAAGCCAT
*
34303 CCATTGAAAAGAAAAGTCCATTTATAGTCAGTCATGCCTT
130 CCATTAAAAAGAAAAGTCCATTTATAGTCAGTCATGCCTT
* * * * * *
34343 TAAAAACCTCATTA-TACGCTTTAAATGGTTTTATAATCTTATAAATAATTTTAAATTAAAGTCT
1 CAAAAGCATCGTTACT-CGCTTTAAATGATTTTATAATCTTATAAATAATTTTAAATCAAA-TCT
* * * * *
34407 TTTTCGTTTTTGGTTAAAATCA-ATTATAATTGAATGTTTGTATC-AGTAAATGTGAAGCGGATG
64 TTTTCGATTTTGGTTAAAAT-AGATCATAATTGAATG-TTGTATCGAG-AAACGTGAAGCGAAAG
* * *
34470 CCATCCATTAACAAAG-AAAGTCTATTTATAGTTAGTTATGCCTT
126 CCATCCATTAA-AAAGAAAAGTCCATTTATAGTCAGTCATGCCTT
* * * * *
34514 CAAAAGCGTCGTTACTCACTTTAAAT-ACTTTTATATTCTTA-AAATTATTTTTAATCAAAATCT
1 CAAAAGCATCGTTACTCGCTTTAAATGA-TTTTATAATCTTATAAATAATTTTAAATC-AAATCT
34577 TTT
64 TTT
34580 CATTGATTCA
Statistics
Matches: 193, Mismatches: 35, Indels: 18
0.78 0.14 0.07
Matches are distributed among these distances:
169 4 0.02
170 96 0.50
171 88 0.46
172 5 0.03
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (169 bp):
CAAAAGCATCGTTACTCGCTTTAAATGATTTTATAATCTTATAAATAATTTTAAATCAAATCTTT
TTCGATTTTGGTTAAAATAGATCATAATTGAATGTTGTATCGAGAAACGTGAAGCGAAAGCCATC
CATTAAAAAGAAAAGTCCATTTATAGTCAGTCATGCCTT
Found at i:34658 original size:166 final size:169
Alignment explanation
Indices: 34191--34665 Score: 385
Period size: 171 Copynumber: 2.8 Consensus size: 169
34181 TTGTTACTTG
* * * * * * * *
34191 CTTTAAATGA-TTTTATAATCATGTGAATGATTTGAAATCGAAATCTTTTTCGATTTTGGTTAAA
1 CTTTAAAT-ACTTTTATAATCTTATAAATAATTTTAAATCAAAATCTTTTTC--TATTGATTAAA
* * * * * * * * *
34255 AT-AGATCATAATTGGAT-GTTGTATC-GAGAAACGTGAAGTGAAAGGCATCCATTGAAAAGAAA
63 ATCA-ATCATAATTGAATATTTGCATCAG-GAAACATGAAGCGGATGCCATCCATTGACAAGAAA
* * *
34317 AGTCCATTTATAGTCAGTCATGCCTTTAAAAACCTCATTATACG
126 AGTCTATTTATAGTCAGTCATGCCTTCAAAAACCTCATTATACA
** * * * *
34361 CTTTAAATGGTTTTATAATCTTATAAATAATTTTAAATTAAAGTCTTTTTCGTTTTTGGTTAAAA
1 CTTTAAATACTTTTATAATCTTATAAATAATTTTAAATCAAAATCTTTTTC--TATTGATTAAAA
* * * * ** *
34426 TCAATTATAATTGAATGTTTGTATCAGTAAATGTGAAGCGGATGCCATCCATTAACAA-AGAAAG
64 TCAATCATAATTGAATATTTGCATCAGGAAACATGAAGCGGATGCCATCCATTGACAAGA-AAAG
* * * * *
34490 TCTATTTATAGTTAGTTATGCCTTCAAAAGCGTCGTTACT-CA
128 TCTATTTATAGTCAGTCATGCCTTCAAAAACCTCATTA-TACA
* * * *
34532 CTTTAAATACTTTTATATTCTTA-AAATTATTTTTAATCAAAATC-TTTTC-ATTGATTCAAATC
1 CTTTAAATACTTTTATAATCTTATAAATAATTTTAAATCAAAATCTTTTTCTATTGATTAAAATC
* **
34594 AATCAT-ATATGGATATTTGCATCAGGAAACATGAAGCGGATGTGATCCATTGACAAGAAAAGTC
66 AATCATAAT-TGAATATTTGCATCAGGAAACATGAAGCGGATGCCATCCATTGACAAGAAAAGTC
34658 TATTTATA
130 TATTTATA
34666 TTCACTATCA
Statistics
Matches: 248, Mismatches: 49, Indels: 20
0.78 0.15 0.06
Matches are distributed among these distances:
165 2 0.01
166 67 0.27
167 1 0.00
169 5 0.02
170 84 0.34
171 87 0.35
172 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (169 bp):
CTTTAAATACTTTTATAATCTTATAAATAATTTTAAATCAAAATCTTTTTCTATTGATTAAAATC
AATCATAATTGAATATTTGCATCAGGAAACATGAAGCGGATGCCATCCATTGACAAGAAAAGTCT
ATTTATAGTCAGTCATGCCTTCAAAAACCTCATTATACA
Found at i:36524 original size:16 final size:16
Alignment explanation
Indices: 36500--36534 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
36490 TAAAAATATC
*
36500 AAAAAAATCATAATCT
1 AAAAAAATCAAAATCT
*
36516 AAAAGAATCAAAATCT
1 AAAAAAATCAAAATCT
36532 AAA
1 AAA
36535 TTTTGCTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAAAAATCAAAATCT
Found at i:37249 original size:169 final size:166
Alignment explanation
Indices: 36892--37804 Score: 570
Period size: 169 Copynumber: 5.4 Consensus size: 166
36882 AAGCCTTTAA
* * * * *
36892 ACTTGCTTTAAATAGTTTTATAATCTTAAAAAC-GATTTTAAAGT-AAAATCATTTTTTTTTTGT
1 ACTTACTTTAAATGGTTTTATAACCTTATAAACAGATTTGAAA-TCAAAATC-TTTTTTTTTTGT
* ** * ** ** * * *
36955 TAAAATCAATCATAATTGAATGCTATT--ATCAGTAAATGTGAAGTGGATGCCATCTATTGACAA
64 TAAAA-CAATCATAATTGGATG-T-TTGCATTGGAAAACATGAAAAGAAAGCCATCCATTGA-AA
* * * * * * * *
37018 GAAATGTCCATCTATAGTCATTCATGCCATCGAAAGTCTTGTT
125 AAAAAGT-AATTTATAGTCAATCATGCCTTCAAAAGCCTTGTT
* *
37061 ACTTAC-TTAAATGGTTTTATAACCATATAAA-AGATTTGAAATCAAAATCTTTTTTGATTTTGC
1 ACTTACTTTAAATGGTTTTATAACCTTATAAACAGATTTGAAATCAAAATCTTTTTT--TTTTGT
* *
37124 TAAAATCAATCATAATTGGATG-TTGCATTGGGAAACATGAAAAGAAAGTCATCCATTGAAAAAA
64 TAAAA-CAATCATAATTGGATGTTTGCATTGGAAAACATGAAAAGAAAGCCATCCATTG-AAAAA
* * * *
37188 AAAGTATATTTATAATTAGTCAAGCCTTCAAAAGCCTTGTT
127 AAAGTA-ATTTATAGTCAATCATGCCTTCAAAAGCCTTGTT
* * * * *
37229 ACTTGCTTTAGAAT-GTTTTATAACCTTGTAAACACA-TTGAAATCAAAATC--TTTTGTTTATT
1 ACTTACTTTA-AATGGTTTTATAACCTTATAAACAGATTTGAAATCAAAATCTTTTTTTTTTGTT
* * * * ** ** ** *
37290 AAAACAAATTACATTTGGATGTTTGCATTGGAAAATATGAAGCGAATCCCATCCATTTTCAAGAA
65 AAAAC-AATCATAATTGGATGTTTGCATTGGAAAACATGAAAAGAAAGCCATCCA-TTGAAAAAA
* * * *
37355 AAGTCAATTTAGAGTCACTCATGCCATCAAAAGACTTGTT
128 AAGT-AATTTATAGTCAATCATGCCTTCAAAAGCCTTGTT
* * * * * **
37395 ACTT-CGTTTAAATGATATTATAA-TTTATAAATA-ATTTTAAATTGAAATCTTTTTTATTTTTG
1 ACTTAC-TTTAAATGGTTTTATAACCTTATAAACAGATTTGAAATCAAAATC-TTTTT-TTTTT-
* ** *
37457 GTTAAAACATATCATAATTGGATGTTTGCATT-GACAAACATGAAGTA-AAAGCCATTTATTGAC
62 GTTAAAACA-ATCATAATTGGATGTTTGCATTGGA-AAACATGAA-AAGAAAGCCATCCATTGAA
* ** *
37520 AAAAAAGTCCATTTATAGTCAATCATGCCTTTGATAGCCTTGTT
124 AAAAAAGT-AATTTATAGTCAATCATGCCTTCAAAAGCCTTGTT
* * * * *
37564 ACTCACTTTAAATGGTTTTATAATCTTATAAA-TGATTTCAAACCAAAATCTTCTTCATTTTTTG
1 ACTTACTTTAAATGGTTTTATAACCTTATAAACAGATTTGAAATCAAAATCTT-TT--TTTTTTG
** * * *
37628 TTAAAATCAATCATAATTGGATGTTTGCA-TCAAAACACATGAAATGAATGCCATCCACTGATAA
63 TTAAAA-CAATCATAATTGGATGTTTGCATTGGAAA-ACATGAAAAGAAAGCCATCCATTGA-AA
* * * * * *
37692 GAAATGTCCATTTGTAGTCACTCAAGCCATT-AAAAGCCTTGTT
125 AAAAAGT-AATTTATAGTCAATCATGCC-TTCAAAAGCCTTGTT
** * * * *
37735 ACACACTTTAAATGGTTTTATAATCTTAGAAA-TGATTTTAAATCAAAATCTTGTTTGTTTTTAG
1 ACTTACTTTAAATGGTTTTATAACCTTATAAACAGATTTGAAATCAAAATCTT-TTT-TTTTT-G
37799 TTAAAA
63 TTAAAA
37805 TTGATCCTAA
Statistics
Matches: 586, Mismatches: 118, Indels: 78
0.75 0.15 0.10
Matches are distributed among these distances:
164 2 0.00
165 42 0.07
166 78 0.13
167 14 0.02
168 97 0.17
169 133 0.23
170 119 0.20
171 98 0.17
172 3 0.01
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (166 bp):
ACTTACTTTAAATGGTTTTATAACCTTATAAACAGATTTGAAATCAAAATCTTTTTTTTTTGTTA
AAACAATCATAATTGGATGTTTGCATTGGAAAACATGAAAAGAAAGCCATCCATTGAAAAAAAAG
TAATTTATAGTCAATCATGCCTTCAAAAGCCTTGTT
Found at i:38211 original size:171 final size:167
Alignment explanation
Indices: 36897--38271 Score: 693
Period size: 171 Copynumber: 8.1 Consensus size: 167
36887 TTTAAACTTG
* * * *
36897 CTTTAAATAGTTTTATAATCTTAAAAACGATTTTAAAGTAAAATCATTTTT-TTTTT-GTTAAAA
1 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTAAAATC-TTTTTATTTTTGGTTAAAA
* * * * *
36960 TC-AAT-CATAATTGAATGCTATT--ATCAGTAAA-TGTGAAGTGGATGCCATCTATTGACAAGA
65 -CAAATACAT--TTGGATG-T-TTGCAT-AGGAAACT-TGAAGCGAATGCCATCCATTGACAAGA
* * * * * *
37020 AATGTCCATCTATAGTCATTCATGCCATCGAAAGTCTTGTTACTTA
123 AAAGTCCATTTATAGTCACTCAAGCCAT-GAAAGCCTTGTTACTCA
* * * * * *
37066 C-TTAAATGGTTTTATAACCATATAAAAGATTTGAAATCAAAATCTTTTT-TGATTTT-GCTAAA
1 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTAAAATCTTTTTAT--TTTTGGTTAAA
* * ** * * * *
37128 ATC-AAT-CATAATTGGATG-TTGCATTGGGAAACATGAAAAGAAAGTCATCCATTGAAAAAAAA
64 A-CAAATACAT--TTGGATGTTTGCA-TAGGAAACTTGAAGCGAATGCCATCCATTGACAAGAAA
** * * * * * **
37190 AGTATATTTATAATTAGTCAAGCCTTCAAAAGCCTTGTTACTTG
125 AGTCCATTTATAGTCACTCAAGCCAT-GAAAGCCTTGTTACTCA
* * * * * * * *
37234 CTTTAGAAT-GTTTTATAACCTTGTAAA-CACATTGAAATCAAAATC--TTT-TGTTT-ATTAAA
1 CTTTA-AATGGTTTTATAATCTTATAAATGA-TTTTAAATTAAAATCTTTTTATTTTTGGTTAAA
* * * **
37293 ACAAATTACATTTGGATGTTTGCATTGGAAAATATGAAGCGAATCCCATCCATTTTCAAGAAAAG
64 ACAAA-TACATTTGGATGTTTGCATAGGAAACT-TGAAGCGAATGCCATCCATTGACAAGAAAAG
* * * * *
37358 TCAATTTAGAGTCACTCATGCCATCAAAAGACTTGTTACTTC-
127 TCCATTTATAGTCACTCAAGCCAT-GAAAGCCTTGTTAC-TCA
* * * * *
37400 GTTTAAATGATATTATAAT-TTATAAATAATTTTAAATTGAAATCTTTTTTATTTTTGGTTAAAA
1 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTAAAATC-TTTTTATTTTTGGTTAAAA
* * * * ** * **
37464 CATAT-CATAATTGGATGTTTGCATTGACAAACATGAAGTAAAAGCCATTTATTGACAA-AAAAG
65 CAAATACAT--TTGGATGTTTGCATAG-GAAACTTGAAGCGAATGCCATCCATTGACAAGAAAAG
* * * *
37527 TCCATTTATAGTCAATCATGCCTTTGATAGCCTTGTTACTCA
127 TCCATTTATAGTCACTCAAGCC-ATGAAAGCCTTGTTACTCA
* ** * *
37569 CTTTAAATGGTTTTATAATCTTATAAATGATTTCAAACCAAAATCTTCTTCATTTTTTGTTAAAA
1 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTAAAATCTT-TTTATTTTTGGTTAAAA
* * ** * *
37634 TC-AAT-CATAATTGGATGTTTGCATCA-AAACACATGAAATGAATGCCATCCACTGATAAGAAA
65 -CAAATACAT--TTGGATGTTTGCAT-AGGAA-ACTTGAAGCGAATGCCATCCATTGACAAGAAA
* * * *
37696 TGTCCATTTGTAGTCACTCAAGCCATTAAAAGCCTTGTTACACA
125 AGTCCATTTATAGTCACTCAAGCCA-TGAAAGCCTTGTTACTCA
* * * *
37740 CTTTAAATGGTTTTATAATCTTAGAAATGATTTTAAATCAAAATCTTGTTTGTTTTTAGTTAAAA
1 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTAAAATCTT-TTTATTTTTGGTTAAAA
*** * * ** * * * * * *
37805 TTGATCCTAATCAGATATTTGCATTAGGAAGA--TGAAGCAAAAGACATCCATTAACGAGAAAAG
65 CAAATAC-ATTTGGATGTTTGCA-TAGGAA-ACTTGAAGCGAATGCCATCCATTGACAAGAAAAG
* * * *
37868 T-C-TCTAATAGTCA-T---GCCAAAT-AAAGCCATGTAACTCG
127 TCCAT-TTATAGTCACTCAAGCC--ATGAAAGCCTTGTTACTCA
* * * * * * * *
37905 CTTTAAATGGTTCTATAATCTCATAAATTATTTTCAGTTGAAATCTCTTTTGTTTTTGCTTAAAA
1 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTAAAATCT-TTTTATTTTTGGTTAAAA
* * * ** * * * * * * *
37970 CAGAAGATAATTATATGCTTGCATTGAGAAA-TGTAAAG-TAGATGGCATCCACTAACAAGAAAA
65 CA-AATACATTTGGATGTTTGCATAG-GAAACT-TGAAGCGA-ATGCCATCCATTGACAAGAAAA
* * *
38033 TTCCATTTATAGTCACTCAAG-CATGGAAAAGCCTTATTACTTA
126 GTCCATTTATAGTCACTCAAGCCAT-G-AAAGCCTTGTTACTCA
* *
38076 CTTTAAATGGTTTTATATTCTTATAAATTATTTTAAATTAAAATCTTTTTCATTTTTGGTTAAAA
1 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTAAAATCTTTTT-ATTTTTGGTTAAAA
* * * *
38141 CAGAATACATTTGGAGGTTTACATCAGGAAACTTGAAGCGAATGCCATCCATTGACAATAAATGT
65 CA-AATACATTTGGATGTTTGCAT-AGGAAACTTGAAGCGAATGCCATCCATTGACAAGAAAAGT
* ** * * **
38206 CCATTTATTGTCACTCGTGCCATTGAAAGCCCTATTACTTG
128 CCATTTATAGTCACTCAAGCCA-TGAAAGCCTTGTTACTCA
*
38247 TTTTAAATGGTTTTATAATCTTATA
1 CTTTAAATGGTTTTATAATCTTATA
38272 NNNNNNNNNN
Statistics
Matches: 925, Mismatches: 218, Indels: 124
0.73 0.17 0.10
Matches are distributed among these distances:
164 4 0.00
165 126 0.14
166 98 0.11
167 24 0.03
168 109 0.12
169 129 0.14
170 150 0.16
171 272 0.29
172 11 0.01
173 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (167 bp):
CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTAAAATCTTTTTATTTTTGGTTAAAAC
AAATACATTTGGATGTTTGCATAGGAAACTTGAAGCGAATGCCATCCATTGACAAGAAAAGTCCA
TTTATAGTCACTCAAGCCATGAAAGCCTTGTTACTCA
Found at i:39561 original size:169 final size:170
Alignment explanation
Indices: 39139--39579 Score: 435
Period size: 171 Copynumber: 2.6 Consensus size: 170
39129 ATGTGAAGTG
** * * *
39139 GATGCCATCCATTGACAAGAAATTTTTATTTATAGTCACTCATCCCATCGAAAGCTTTCTTACTC
1 GATGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCATACCATCGAAAGCATTGTTACT-
* ** * * * *
39204 A-CTTTTAATGGCTTTATAATCTTATTAAAGATTTTCAATTGAAATATTCTTTGTTTTTTCATAA
65 AGCTTTAAATGATTTTATAATCTTATAAAAGATTTTAAATTGAAATATTCTTTGCTTTTGCATAA
* * * * * *
39268 AACATATTGCATTTGGATGTTTGCTTAGGAAAATGTGAAGCA
130 AACATATTACATTTGGATGTTTACTCA-GAAAAGGTAAAACA
* * * * * * * *
39310 GATGCTATCCATTGACAATAAAAGTTTATTTATAGACACGCATGCCATCAAAAGCATTGTTATTG
1 GATGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCATACCATCGAAAGCATTGTTACTA
* * **
39375 GCTTTAAAAGTTTTTATAATCTTATAAAAGATTTTAAATTGAAA-ACTT-TTTGCTTTTGGTTAA
66 GCTTTAAATGATTTTATAATCTTATAAAAGATTTTAAATTGAAATA-TTCTTTGCTTTTGCATAA
* *
39438 AACATATTACATTTGGATGTTTACATCA-AGAAGGTAAAATA
130 AACATATTACATTTGGATGTTTAC-TCAGAAAAGGTAAAACA
* * * * * *
39479 GATGCCATCTATTTG-TAAGAAAAGTTTATTTATAGTCACTCATACTATTGAAAGCCTTGTTAGT
1 GATGCCATCCA-TTGACAAGAAAAGTTTATTTATAGTCACTCATACCATCGAAAGCATTGTTACT
**
39543 AGCTTTAAATGATTTTATAAT-TTATAAATTATTTTAA
65 AGCTTTAAATGATTTTATAATCTTATAAAAGATTTTAA
39580 TCCAAAATCT
Statistics
Matches: 219, Mismatches: 47, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
168 14 0.06
169 74 0.34
170 37 0.17
171 94 0.43
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (170 bp):
GATGCCATCCATTGACAAGAAAAGTTTATTTATAGTCACTCATACCATCGAAAGCATTGTTACTA
GCTTTAAATGATTTTATAATCTTATAAAAGATTTTAAATTGAAATATTCTTTGCTTTTGCATAAA
ACATATTACATTTGGATGTTTACTCAGAAAAGGTAAAACA
Found at i:40325 original size:36 final size:36
Alignment explanation
Indices: 40280--40474 Score: 304
Period size: 36 Copynumber: 5.5 Consensus size: 36
40270 TTAATTGTTT
* *
40280 AATTTAATCAATTAGGCCTAATAACTTAATTAAATA
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
*
40316 AATTTAATCAATTAGGCCCAATAACTTGATTAAACA
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
*
40352 AATTTAATCAATTAGGCCCAAAAACTTAATTAAAC-
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
*
40387 AATTTAATCAATTAGGCCCAATAACTTGATTAAACA
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
* *
40423 AATTTAATCAATTAGGCCTAATAACTTAATTAAA-T
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
*
40458 AATTTAATGAATTAGGC
1 AATTTAATCAATTAGGC
40475 ACAACTTAGT
Statistics
Matches: 147, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
35 49 0.33
36 98 0.67
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.33
Consensus pattern (36 bp):
AATTTAATCAATTAGGCCCAATAACTTAATTAAACA
Found at i:40381 original size:107 final size:106
Alignment explanation
Indices: 40280--40494 Score: 319
Period size: 107 Copynumber: 2.0 Consensus size: 106
40270 TTAATTGTTT
* * *
40280 AATTTAATCAATTAGGCCTAATAACTTAATTAAATAAATTTAATCAATTAGGCCCAATAACTTGA
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACAAATTTAATCAATTAGGCCCAATAACTTAA
40345 TTAAACAAATTTAATCAATTAGGCCCAAAAACTTAATTAAAC
66 TTAAA-AAATTTAATCAATTAGGCCCAAAAACTTAATTAAAC
* *
40387 AATTTAATCAATTAGGCCCAATAACTTGATTAAACAAATTTAATCAATTAGGCCTAATAACTTAA
1 AATTTAATCAATTAGGCCCAATAACTTAATTAAACAAATTTAATCAATTAGGCCCAATAACTTAA
* * * *
40452 TTAAATAATTTAATGAATTAGG--C-ACAACTTAGTTAAAC
66 TTAAAAAATTTAATCAATTAGGCCCAAAAACTTAATTAAAC
40490 AATTT
1 AATTT
40495 TAAGCAAGTG
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
103 18 0.18
104 1 0.01
106 15 0.15
107 65 0.66
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.33
Consensus pattern (106 bp):
AATTTAATCAATTAGGCCCAATAACTTAATTAAACAAATTTAATCAATTAGGCCCAATAACTTAA
TTAAAAAATTTAATCAATTAGGCCCAAAAACTTAATTAAAC
Found at i:40404 original size:71 final size:71
Alignment explanation
Indices: 40280--40474 Score: 336
Period size: 71 Copynumber: 2.7 Consensus size: 71
40270 TTAATTGTTT
40280 AATTTAATCAATTAGGCCTAATAACTTAATTAAATAAATTTAATCAATTAGGCCCAATAACTTGA
1 AATTTAATCAATTAGGCCTAATAACTTAATTAAA-AAATTTAATCAATTAGGCCCAATAACTTGA
40345 TTAAACA
65 TTAAACA
* * *
40352 AATTTAATCAATTAGGCCCAAAAACTTAATTAAACAATTTAATCAATTAGGCCCAATAACTTGAT
1 AATTTAATCAATTAGGCCTAATAACTTAATTAAAAAATTTAATCAATTAGGCCCAATAACTTGAT
40417 TAAACA
66 TAAACA
* *
40423 AATTTAATCAATTAGGCCTAATAACTTAATTAAATAATTTAATGAATTAGGC
1 AATTTAATCAATTAGGCCTAATAACTTAATTAAAAAATTTAATCAATTAGGC
40475 ACAACTTAGT
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
71 84 0.72
72 32 0.28
ACGTcount: A:0.46, C:0.14, G:0.08, T:0.33
Consensus pattern (71 bp):
AATTTAATCAATTAGGCCTAATAACTTAATTAAAAAATTTAATCAATTAGGCCCAATAACTTGAT
TAAACA
Found at i:42215 original size:170 final size:168
Alignment explanation
Indices: 41719--42461 Score: 454
Period size: 170 Copynumber: 4.4 Consensus size: 168
41709 ATATTTATCT
* *** * * *
41719 ATGCGTTCAAAAGCCACGTTACTCACTTTAAATGGGTTCT-TAATCTTATAAATAATTTTATAGT
1 ATGCCTTCAAAAGCCTTATTACTCACTTTAAAT-GGTTTTATAATCTTATAAATGATTTTA-AAT
* * * * * * * * **
41783 GAACAT-TTTTTCCTTTTTTGTTAAAACGGATCATAATTTGATGTTTGCATTAGAAAATATGATG
64 CAAAATCTTTTT-GTTTTTAGTTAAAAC-AATCATAATTGGATGTTTGCA-TAGGAAATGTGAAA
* ** * * * * *
41847 TAAAAGCCATTCA-GTAGTAAGAAATGTCCATTTATAGTCATTC
126 TGAATTCCATCCATTTTG-AAGAAAAGTCCATTTATAGTCACTC
* * * * *
41890 ATACGTTCTAAAGCC-TAGTTTA-TCACGTTAAATGGTTTTGTAATCTTATAAATGATTTTAAAT
1 ATGCCTTCAAAAGCCTTA--TTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT
* * * * * ** *
41953 TAAAATATTTTTATTTTT-GATTAAAACAAATCATAATTGAATGTTTGGATTAGGAAATGCCAAG
64 CAAAATCTTTTTGTTTTTAG-TTAAAAC-AATCATAATTGGATGTTTGCA-TAGGAAATGTGAAA
** * * * * *
42017 CAAAATCCTTCCA--TTGATGATTAAAGTCCATTAATAGTCAGTC
126 TGAATTCCATCCATTTTGAAGA--AAAGTCCATTTATAGTCACTC
* *
42060 ATGCCTTCAAAAGCCTTATTACTCGCATTAAATGGTTTTATAATCTTATAAATGATTTTAAATCA
1 ATGCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCA
* *
42125 GAATCTATTTTGTTTTTAGTTAAATCAATCATAATTGGATGTTTGCACTAAGG-AATGTGAAATG
66 AAATCT-TTTTGTTTTTAGTTAAAACAATCATAATTGGATGTTTGCA-T-AGGAAATGTGAAATG
* *
42189 GATTCCATCCATTTTGAAGAAAAGTCCATTTATAG-CTACTT
128 AATTCCATCCATTTTGAAGAAAAGTCCATTTATAGTC-ACTC
* * * * * ** * * *
42230 ATG-CTATTAACAGCCTTGTTAGTCACTTTAATTAATGTTATAAT-TTATAAAT-AATTTGAATC
1 ATGCCT-TCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATC
* * ** *
42292 AAAATCTTTTT-TGTTTTAGGTTAAAACAGAT-ATTAATTGGATGTTTACAATGGGAAACATGTA
65 AAAATCTTTTTGT-TTTTA-GTTAAAACA-ATCA-TAATTGGATGTTTGC-ATAGGAAATGTGAA
* * *** *
42355 TTGAATGCCATCCATTAACAAGAAAAGTCCATTTATAGTTACTC
125 ATGAATTCCATCCATTTTGAAGAAAAGTCCATTTATAGTCACTC
* * * *** * *
42399 ATGCCTTCGAAAGCTTTTTTACTTGTTTTAAATGGTTATATATTCTTATAAATGATTTTAAAT
1 ATGCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT
42462 TGAAACCTTT
Statistics
Matches: 446, Mismatches: 100, Indels: 52
0.75 0.17 0.09
Matches are distributed among these distances:
166 1 0.00
167 9 0.02
168 28 0.06
169 100 0.22
170 224 0.50
171 74 0.17
172 10 0.02
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (168 bp):
ATGCCTTCAAAAGCCTTATTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCA
AAATCTTTTTGTTTTTAGTTAAAACAATCATAATTGGATGTTTGCATAGGAAATGTGAAATGAAT
TCCATCCATTTTGAAGAAAAGTCCATTTATAGTCACTC
Found at i:42578 original size:15 final size:15
Alignment explanation
Indices: 42558--42587 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
42548 AAAAAGTCTA
42558 TTTGTAGTCACTTGT
1 TTTGTAGTCACTTGT
42573 TTTGTAGTCACTTGT
1 TTTGTAGTCACTTGT
42588 GTCATAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.20, T:0.53
Consensus pattern (15 bp):
TTTGTAGTCACTTGT
Found at i:42844 original size:37 final size:37
Alignment explanation
Indices: 42803--42878 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
42793 TATAATCTTA
* *
42803 TAAATGATTTTAAATCGAAATGCTCTTT-ATTTTTGGT
1 TAAATGATTTTAAAGCAAAAT-CTCTTTCATTTTTGGT
*
42840 TAAATGATTTTAAAGCAAAATCTTTTTCATTTTTGGT
1 TAAATGATTTTAAAGCAAAATCTCTTTCATTTTTGGT
42877 TA
1 TA
42879 CAACATATCA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
36 5 0.14
37 30 0.86
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.49
Consensus pattern (37 bp):
TAAATGATTTTAAAGCAAAATCTCTTTCATTTTTGGT
Found at i:43850 original size:169 final size:169
Alignment explanation
Indices: 43551--44530 Score: 673
Period size: 171 Copynumber: 5.8 Consensus size: 169
43541 TCTTTATAGA
*** * * * * * *
43551 AAAAGTCCATTTATAGTCACTTGTGCCATCGAAAA-CCTTGTTAGTTGCTTGAATTAATTTTATA
1 AAAAGTCCATTTATAGTCACTCAAGCCTTC-AAAAGCCTTGTTACTCGCTTTAAATGATTTTATA
* * * * *
43615 AT-TTATAAATTATTTTAAATCAAAATTATTTTTGTTTTTAGTTAAAACAGAT-ATTAATTAGAT
65 ATCTTATAAA-AATTTTAAATAAAAATT-TTTTTGTTTTTAGTTAAAATAAATCA-TAATTGGAT
* *
43678 GTTTGCATTATGAAACATTAAGCAAAAGCCATCCATTGA-AAG
127 GTTTGCATTAGGAAACATGAAGCAAAAGCCATCCATTGACAAG
* * *
43720 AAAAGTTCATTTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTTGCTTTAAGTGATTTCT-TA
1 AAAAGTCCATTTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTCGCTTTAAATGATTT-TATA
** * * *
43784 ATCTTATAAAAATTTTAAATTGAATTTTTTTTCATTTTAAGTTAAAATAAATCATAATTGGATGT
65 ATCTTATAAAAATTTTAAATAAAAATTTTTTT-GTTTTTAGTTAAAATAAATCATAATTGGATGT
* * * * *
43849 TTACA-TAGGGAAATATGAAGCAAAAGACATTCATTGGCAAG
129 TTGCATTA-GGAAACATGAAGCAAAAGCCATCCATTGACAAG
* * * * * *
43890 AAAAGTCCATTTGTAGTCACTCATA-CGTTCAAAA-TCTTAGTTTCTCACTTTAAATGGTTTTAT
1 AAAAGTCCATTTATAGTCACTCA-AGCCTTCAAAAGCCTT-GTTACTCGCTTTAAATGATTTTAT
** * * * * *
43953 AATCTTATAAATTGTTTTAATTCAAAA--TCTTT-TTTTTAGTTAAAACAGATCATAATTGGATG
64 AATCTTATAAA-AATTTTAAATAAAAATTTTTTTGTTTTTAGTTAAAATAAATCATAATTGGATG
* ** * * * *
44015 TTTGCATTGGGAAACATGAAGTGAAATCCATGCACTGACAAT
128 TTTGCATTAGGAAACATGAAGCAAAAGCCATCCATTGACAAG
* * * * * * *
44057 AAAAGTCCAGTTATAGTTAGTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATTATTTTATAA
1 AAAAGTCCATTTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTCGCTTTAAATGATTTTATAA
* * * * * * *
44122 TCTTATAAAGGATTTCAAATCAAAATATTCTTCT-TTTTTGGTTAAAAATCAATCATAATTAGAT
66 TCTTATAAA-AATTTTAAAT-AAAA-ATTTTTTTGTTTTTAGTT-AAAATAAATCATAATTGGAT
* * * * * * *
44186 GTTTACATTAAGAAACATAAAGCAAATGCCATCTAGTGATAA-
127 GTTTGCATTAGGAAACATGAAGCAAAAGCCATCCATTGACAAG
* * * ** *
44228 AAAATATCCATTTGTAGTCACACAAGCCCTT-AAAAGCCTTGTTACAAGCTTTAAATGGTTTTAT
1 AAAA-GTCCATTTATAGTCACTCAAG-CCTTCAAAAGCCTTGTTACTCGCTTTAAATGATTTTAT
* * * * * *
44292 AATCTTA-AAAATTACTTTAAA-ACAAAACCTTTTTTGTTTTTAGTTCACATCAATCATCATTGG
64 AATCTTATAAAA--ATTTTAAATA-AAAA-TTTTTTTGTTTTTAGTTAAAATAAATCATAATTGG
* * * * **
44355 ATGTTTGCATTAGAAAATATGAAGAAAAAACCATCCATCAACAAG
125 ATGTTTGCATTAGGAAACATGAAGCAAAAGCCATCCATTGACAAG
** * * * * * ***
44400 AAACTTCCATTTATAGTTAGTCATGCCTTCAAAAGCCTTGTAAATAATTTTAAAT-AGTTTTATA
1 AAAAGTCCATTTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTCGCTTTAAATGA-TTTTATA
* * ** * **
44464 ATCTTATAAATGATTTTTTAA-AAAAATATTTTTCATTTTTGGTTAAAATTGATCATAATTGGAT
65 ATCTTATAAA--AATTTTAAATAAAAAT-TTTTTTGTTTTTAGTTAAAATAAATCATAATTGGAT
44528 GTT
127 GTT
44531 CTCATCTGAA
Statistics
Matches: 622, Mismatches: 156, Indels: 64
0.74 0.19 0.08
Matches are distributed among these distances:
167 118 0.19
168 18 0.03
169 124 0.20
170 75 0.12
171 162 0.26
172 120 0.19
173 4 0.01
174 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (169 bp):
AAAAGTCCATTTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTCGCTTTAAATGATTTTATAA
TCTTATAAAAATTTTAAATAAAAATTTTTTTGTTTTTAGTTAAAATAAATCATAATTGGATGTTT
GCATTAGGAAACATGAAGCAAAAGCCATCCATTGACAAG
Found at i:43958 original size:170 final size:166
Alignment explanation
Indices: 43649--44440 Score: 454
Period size: 167 Copynumber: 4.7 Consensus size: 166
43639 ATTATTTTTG
* * * * * *
43649 TTTTTAGTTAAAACAGAT-ATTAATTAGATGTTTGCATTA-TGAAACATTAAGCAAAAGCCATCC
1 TTTTTAGTTAAAACAAATCA-TAATTGGATGTTTACA-TAGGGAAACATGAAGCAAAAGACATCC
* ** *
43712 ATTGAAAGAAAAGTTCATTTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTTGCTTTAAGTGA
64 ATTGAAAGAAAAGTCCATTTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTCACTTTAAATGA
* ** *
43777 TTTCTTAATCTTATAAAAAT-TTTAAATTGAATTTTTTT
129 TTTCTTAATCTTAT-AAAATGTTTAAATTCAAAATCTTT
* * *
43815 TCATTTTAAGTTAAAATAAATCATAATTGGATGTTTACATAGGGAAATATGAAGCAAAAGACATT
1 T--TTTT-AGTTAAAACAAATCATAATTGGATGTTTACATAGGGAAACATGAAGCAAAAGACATC
* * * * *
43880 CATTGGCAAGAAAAGTCCATTTGTAGTCACTCATA-CGTTCAAAA-TCTTAGTTTCTCACTTTAA
63 CATT-GAAAGAAAAGTCCATTTATAGTCACTCA-AGCCTTCAAAAGCCTT-GTTACTCACTTTAA
* * *
43943 ATGGTTT-TATAATCTTATAAATTGTTTTAATTCAAAATCTTT
125 ATGATTTCT-TAATCTTATAAAATGTTTAAATTCAAAATCTTT
* * * ** ** * *
43985 TTTTTAGTTAAAACAGATCATAATTGGATGTTTGCATTGGGAAACATGAAGTGAAATCCATGCAC
1 TTTTTAGTTAAAACAAATCATAATTGGATGTTTACATAGGGAAACATGAAGCAAAAGACATCCAT
* * * * * * * * *
44050 TGACAATAAAAGTCCAGTTATAGTTAGTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATTAT
66 TGA-AAGAAAAGTCCATTTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTCACTTTAAATGAT
*
44115 TT-TATAATCTTATAAAGGAT-TTCAAA-TCAAAATATTCTTCT
130 TTCT-TAATCTTATAAA--ATGTTTAAATTC-AAA-A-TCTT-T
* * * * * *
44156 TTTTTGGTTAAAA-ATCAATCATAATTAGATGTTTACATTA-AGAAACATAAAGCAAATGCCATC
1 TTTTTAGTTAAAACA--AATCATAATTGGATGTTTACA-TAGGGAAACATGAAGCAAAAGACATC
* * * * * *
44219 TAGTGATAA-AAAATATCCATTTGTAGTCACACAAGCCCTT-AAAAGCCTTGTTAC-AAGCTTTA
63 CATTGA-AAGAAAA-GTCCATTTATAGTCACTCAAG-CCTTCAAAAGCCTTGTTACTCA-CTTTA
* * * *
44281 AATGGTTT-TATAATCTTA-AAAATTACTTTAAA-ACAAAACCTTTTTT
124 AATGATTTCT-TAATCTTATAAAA-T-GTTTAAATTCAAAA---TCTTT
* * * * * * *
44327 GTTTTTAGTTCACATC-AATCATCATTGGATGTTTGCATTA-GAAAATATGAAG-AAAAAACCAT
1 -TTTTTAGTT-AAAACAAATCATAATTGGATGTTTACA-TAGGGAAACATGAAGCAAAAGA-CAT
** ** * * *
44389 CCATCAACAAGAAACTTCCATTTATAGTTAGTCATGCCTTCAAAAGCCTTGT
62 CCATTGA-AAGAAAAGTCCATTTATAGTCACTCAAGCCTTCAAAAGCCTTGT
44441 AAATAATTTT
Statistics
Matches: 480, Mismatches: 110, Indels: 67
0.73 0.17 0.10
Matches are distributed among these distances:
166 2 0.00
167 110 0.23
168 20 0.04
169 58 0.12
170 87 0.18
171 88 0.18
172 108 0.22
173 7 0.01
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (166 bp):
TTTTTAGTTAAAACAAATCATAATTGGATGTTTACATAGGGAAACATGAAGCAAAAGACATCCAT
TGAAAGAAAAGTCCATTTATAGTCACTCAAGCCTTCAAAAGCCTTGTTACTCACTTTAAATGATT
TCTTAATCTTATAAAATGTTTAAATTCAAAATCTTT
Found at i:44178 original size:339 final size:335
Alignment explanation
Indices: 43608--44530 Score: 893
Period size: 343 Copynumber: 2.7 Consensus size: 335
43598 CTTGAATTAA
43608 TTTTATAAT-TTATAAATTATTTTAAATCAAAATTATTTTTGTTTTTAGTTAAAACAGAT-ATTA
1 TTTTATAATCTTATAAATTATTTTAAATC-AAA--ATTTTTGTTTTTAGTTAAAACAGATCA-TA
* * * * * *
43671 ATTAGATGTTTGCATTATGAAACATTAAGCAAAAGCCATCCATTGA-AAGAAAAGTTCATTTATA
62 ATTGGATGTTTGCATTAGGAAACATGAAGAAAAAACCATCCA-TGACAAGAAAAGTCCATTTATA
* * * * * * *
43735 GTCACTCAAGCCTTCAAAAGCCTTGTTACTTGCTTTAAGTGATTTCT-TAATCTTATAAAAATTT
126 GTTAGTCATGCCTTCAAAAGCCTTGTTACTAGCTTTAAATTATTT-TATAATCTTATAAAGATTT
* * * ** * *
43799 TAAATTGAATTTTTTTTCATTTTAAGTTAAAATAAATCATAATTGGATGTTTACA-TAGGGAAAT
190 TAAA-TAAAATATTTTTCATTTTTGGTTAAAATAAATCATAATTGGATGTTTACATTA-AGAAAC
* * * * * *
43863 ATGAAGCAAAAGACAT-TCATTGGCAAGAAAA-GTCCATTTGTAGTCACTCATA-CGTTCAAAA-
253 ATAAAGCAAAAGACATCT-AGTGACAA-AAAATATCCATTTGTAGTCACACA-ACCCTT-AAAAG
* * *
43924 TCTTAGTTTCTCA-CTTTAAATGG
314 CCTT-GTTAC-AAGCTTTAAATGG
* * *
43947 TTTTATAATCTTATAAATTGTTTTAATTCAAAATCTTT-TTTTTAGTTAAAACAGATCATAATTG
1 TTTTATAATCTTATAAATTATTTTAAATCAAAATTTTTGTTTTTAGTTAAAACAGATCATAATTG
* ** * * * *
44011 GATGTTTGCATTGGGAAACATGAAGTGAAATCCATGCACTGACAATAAAAGTCCAGTTATAGTTA
66 GATGTTTGCATTAGGAAACATGAAGAAAAAACCATCCA-TGACAAGAAAAGTCCATTTATAGTTA
* * * *
44076 GTCATGCCTTCGAAAGCCTTATTACTCGCTTTAAATTATTTTATAATCTTATAAAGGATTTCAAA
130 GTCATGCCTTCAAAAGCCTTGTTACTAGCTTTAAATTATTTTATAATCTTATAAA-GATTTTAAA
* * * *
44141 TCAAAATATTCTTCTTTTTTGGTTAAAAATCAATCATAATTAGATGTTTACATTAAGAAACATAA
194 T-AAAATATTTTTCATTTTTGGTT-AAAATAAATCATAATTGGATGTTTACATTAAGAAACATAA
* * *
44206 AGCAAATGCCATCTAGTGATAAAAAATATCCATTTGTAGTCACACAAGCCCTTAAAAGCCTTGTT
257 AGCAAAAGACATCTAGTGACAAAAAATATCCATTTGTAGTCACACAA-CCCTTAAAAGCCTTGTT
44271 ACAAGCTTTAAATGG
321 ACAAGCTTTAAATGG
* * * * * *
44286 TTTTATAATCTTAAAAATTACTTTAAAACAAAACCTTTTTTGTTTTTAGTTCACATCA-ATCATC
1 TTTTATAATCTTATAAATTATTTTAAATCAAAA---TTTTTGTTTTTAGTT-AAAACAGATCATA
* * * **
44350 ATTGGATGTTTGCATTAGAAAATATGAAGAAAAAACCATCCATCAACAAGAAACTTCCATTTATA
62 ATTGGATGTTTGCATTAGGAAACATGAAGAAAAAACCATCCAT-GACAAGAAAAGTCCATTTATA
* * **
44415 GTTAGTCATGCCTTCAAAAGCCTTGTAAATAATTTTAAA-TAGTTTTATAATCTTATAAATGATT
126 GTTAGTCATGCCTTCAAAAGCCTTGTTACTAGCTTTAAATTA-TTTTATAATCTTATAAA-GA--
**
44479 TTTTAAA-AAAATATTTTTCATTTTTGGTTAAAATTGATCATAATTGGATGTT
187 TTTTAAATAAAATATTTTTCATTTTTGGTTAAAATAAATCATAATTGGATGTT
44531 CTCATCTGAA
Statistics
Matches: 478, Mismatches: 83, Indels: 43
0.79 0.14 0.07
Matches are distributed among these distances:
336 58 0.12
337 71 0.15
338 28 0.06
339 122 0.26
340 26 0.05
342 27 0.06
343 136 0.28
344 4 0.01
345 6 0.01
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (335 bp):
TTTTATAATCTTATAAATTATTTTAAATCAAAATTTTTGTTTTTAGTTAAAACAGATCATAATTG
GATGTTTGCATTAGGAAACATGAAGAAAAAACCATCCATGACAAGAAAAGTCCATTTATAGTTAG
TCATGCCTTCAAAAGCCTTGTTACTAGCTTTAAATTATTTTATAATCTTATAAAGATTTTAAATA
AAATATTTTTCATTTTTGGTTAAAATAAATCATAATTGGATGTTTACATTAAGAAACATAAAGCA
AAAGACATCTAGTGACAAAAAATATCCATTTGTAGTCACACAACCCTTAAAAGCCTTGTTACAAG
CTTTAAATGG
Found at i:45765 original size:193 final size:194
Alignment explanation
Indices: 45416--45777 Score: 514
Period size: 193 Copynumber: 1.9 Consensus size: 194
45406 CCGTAACTCA
* * * *
45416 CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAACAAAATTTCTTTTCTTTTTGGTTAAAA
1 CTTTAAATGATTTTATAATCTTATAAATGATTTTAAAACAAAATTCCTCTTCTTTTTAGTTAAAA
* * **
45481 TTGATAATAATTGGATGTTCTCATCAGGAAACATGATGTGGATACCATCCATTGATAAAAAATTT
66 TTGATAATAATTGGATGTTCTCATCAGGAAACATGAAGTGGATACCATCCATTGACAAAAAATGC
45546 CTATTTATACTCACTCATGCCATCGAAAGCCTTGTTACTTTTTTTTTGAAAGCTCTATTACTTG
131 CTATTTATACTCACTCATGCCATCGAAAGCCTTGTTACTTTTTTTTTGAAAGCTCTATTACTTG
* * * *
45610 CTTTAAATGATTTTATAAT-TTATAAATTATTTTAAATCAAAA-TCCTCTTCATTTTTATTTACA
1 CTTTAAATGATTTTATAATCTTATAAATGATTTTAAAACAAAATTCCTCTTC-TTTTTAGTTAAA
* * ** * *
45673 ATTGATCATAATTGGATGTTTTTTTTAGGAAACATGAAGT-GAGTGCCATCCATTGACAAAAAAT
65 ATTGATAATAATTGGATGTTCTCATCAGGAAACATGAAGTGGA-TACCATCCATTGACAAAAAAT
*
45737 GCCTATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACT
129 GCCTATTTATACTCACTCATGCCATCGAAAGCCTTGTTACT
45778 CATTTTAAAT
Statistics
Matches: 147, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
192 8 0.05
193 121 0.82
194 18 0.12
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (194 bp):
CTTTAAATGATTTTATAATCTTATAAATGATTTTAAAACAAAATTCCTCTTCTTTTTAGTTAAAA
TTGATAATAATTGGATGTTCTCATCAGGAAACATGAAGTGGATACCATCCATTGACAAAAAATGC
CTATTTATACTCACTCATGCCATCGAAAGCCTTGTTACTTTTTTTTTGAAAGCTCTATTACTTG
Found at i:46638 original size:170 final size:171
Alignment explanation
Indices: 45603--49214 Score: 2435
Period size: 171 Copynumber: 21.3 Consensus size: 171
45593 GAAAGCTCTA
* * * * * *
45603 TTACTTGCTTTAAATGATTTTATAAT-TTATAAATTATTTTAAATCAAAATCCTCTTCATTTTTA
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTG
* * ** *** *
45667 TTTACAATTGATCATAATTGGATGTTTTTTTTAGGAAACATGAAGTGAGTGCCATCCATTGACAA
66 GTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGACAA
*
45732 -AAAA-TGCCTATTTATAGTCACTCATGCCATCGAAAGCCTTG
131 GAAAAGT-CC-ATTTATAGTCACTCATGCCTTCGAAAGCCTTG
** * * *
45773 TTACTCATTTTAAATGGTTTTATAATCTTATAAATGACTTAAAATCAAAATCTTCTTCATTTTCT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTT-T
* * ** * * * * * * *
45838 TGTGAAAATTGATCATAATTAGATGTTTTCAATGGGAAACATAAAGTGAATGCCACCCATTAACA
65 GGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGACA
*** *
45903 AGAAAAGTCCATTTATAGTCACTCATATTTTCGAAAGCCTAG
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * * * *
45945 TTACTAGCTTTAAATGGTTTTATAAT-TCTATAAATGATTTCAAATCGAAATCTTGTTCATTTAT
1 TTACTCGCTTTAAATGGTTTTATAATCT-TATAAATGATTTTAAATCAAAATCTTTTTCATTTTT
* * * * * * * * ** * *
46009 GGTT-CAAGCTGATCAT-GTATGGATGTTTGCATCAAGCAACGTGAAGCCAATGTCATCCATTAA
65 GGTTAAAATC-AATCATAAT-TGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGA
* * ** * **
46072 TAAAAAAAGTTTATTTATAGTCACTTATGCCACCGAAAGCCTTG
128 CAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * ** * * * * **
46116 TTATTTGCTCGAAATGATTTGAT--TTTTGATAAAT-AGTTATAAATTGAAATCTTTTTCATTTT
1 TTACTCGCTTTAAATGGTTTTATAATCTT-ATAAATGA-TTTTAAATCAAAATCTTTTTCATTTT
* *
46178 TGGTTAAAAT-AGGTAGCAT--TTGGATGTTTGCATTA-GATAACATGGAGCAT-AA--CCTATC
64 TGGTTAAAATCA---ATCATAATTGGATGTTTGCATTAGGA-AACATGAAG--TGAATGCC-ATC
* * ** * *
46236 CATTGAAAAGAAAATTTTATTTATAGTCAGTAATGCCTTCGAAAGCCTTG
122 CATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * * * * *
46286 TTACTCTCTTTAAATAGTTTTATAATCTTATAAATGATTTCAAATCTAAATATTCTTT-ATTTGT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTTCATTTTT
* * * * * * * * *
46350 AGTTAAAATCTATTATAA-TGAGATGTTTGCATTAGGAAACCTGAAGTGGATTCTATCAATTCAC
65 GGTTAAAATCAATCATAATTG-GATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGAC
* * * * * * * *
46414 ACGAAATGCCCATATGTAGTCACTCAAGCTATTAG-AAGCCTTG
129 AAGAAAAGTCCATTTATAGTCACTCATGC-CTTCGAAAGCCTTG
* * * *
46457 TTA-TACGCTTTAAAT-GTTTTATAATCTTATAAATAATTTTAAATAAAAATATTTTTTATTTTT
1 TTACT-CGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTT
* * ** *
46520 AGTTAAAATCAATCATAATTGGATGTTTGCATCAGGAAACATGAAGTGAAAACCATCCATTGGCA
65 GGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGACA
* ** * * * *
46585 AAAAAAGTTTATTTATAGTCAGTCATGCCTTTGATAGTCTTG
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* *
46627 TAACTCGCTTTAAATGGTTTTATAATGTTATAAATGATTTTAAAAT-AAAATCTTTTTCATTTTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTT-AAATCAAAATCTTTTTCATTTTT
* ** * **
46691 TGTTAAAATGGATCATAATTGGATGTTTTCATTAGGAAACATGAA-TG---G-C-TGGATTGACA
65 GGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGACA
* * * * * *
46750 AGAAATGTCCATTTATGGTCACTCATCCCATCAAAAGCCTAG
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * * * * * * *
46792 TTACTTGCTTTAAATAGTTTTATGAA-ATTATCAATGATTTTTAATTAAAATCTTCCTT-GTTTT
1 TTACTCGCTTTAAATGGTTTTAT-AATCTTATAAATGATTTTAAATCAAAATCTT-TTTCATTTT
* * * * * *
46855 TGGTTAAAATCAATTATAATTAGATGTTTTCAAT-GGAAAACATGAAGCGAATG-CAGTCCACTG
64 TGGTTAAAATCAATCATAATTGGATGTTTGCATTAGG-AAACATGAAGTGAATGCCA-TCCATTG
* ** *
46918 ACATGAAAAGTTTATTTCTAGTCACTCATGCCATT-GAAAGCCTTG
127 ACAAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTG
* * * * * *
46963 TTAATTGCTTAAAATAGTTTTATAATCTTATAAATGATTTTAAATAAAAAAT-TTTTT-GTTTTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-CAAAATCTTTTTCATTTTT
* * * * *
47026 GGTTAAAA-CAAATTA-AAATGGAGGTTTGCATT-GAGAAACATGAAAT-AGATGCCATCCAATG
65 GGTTAAAATC-AATCATAATTGGATGTTTGCATTAG-GAAACATGAAGTGA-ATGCCATCCATTG
* * *
47087 A-TAGAAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTG
127 ACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * ** * **
47132 TTACTCGCTTTAAATGATATTATAAT-TTATAAATGATTTTAAATTGAAGTCTTTTTTGTTTTTG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTG
* * * * *
47196 GTTAAAA-CAGATCATAATTGTATATTTGCATT-GTGAAACATAAAGTAAAAGCCATCCATTGAC
66 GTTAAAATCA-ATCATAATTGGATGTTTGCATTAG-GAAACATGAAGTGAATGCCATCCATTGAC
* * * * * *
47259 AAGAGAAGGCAATTTATAGTCAATCATGCCTTCGACAGGCTTG
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * * * * *
47302 TTACTCGCTTTAAATGGTTTTACACTCTTACAAATGATTTCAAATCAAAATC---TTCGTATTTG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTG
* * * * ** *
47364 GTTAAAATCAATCATAACTAGATGTTTGCATTGGGAAACTTGAA-ACAGATGGCA-CCGATTGAC
66 GTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGA-ATGCCATCC-ATTGAC
* * * * *
47427 AAGAAATGTCCATTTGTAGTCACTAAAGCCATT-GAAAGCGTTG
129 AAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTG
* * * *
47470 TTACAT-GCTTGAAATGGTTTTATAATCTTATAAGTGATTTTAAATTAAAACCTTTTTCATTTTT
1 TTAC-TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTT
* * * * * ** * * *
47534 GGTTAAAATCGATCACAATTGGATGTTTGCATTATGAAACATGTAG-CACAAACTATCTATTGAT
65 GGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGA-ATGCCATCCATTGAC
* * * *
47598 ATGAAAGGTCCGTTTATAGTCACTCATGCTTTCGAAAGCCTTG
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * * * * * * * *
47641 TAACTTGCTTTAAATGGTTTTACAATCTTATAAATGATTTTAAAACAACATCCTTTTGA-GTTTC
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTG
* ** * * *
47705 GTTCAAATTGATCAT-ATTTGATGTTCT-CATTAGGAAACATAAAGCGAATGCCATCCATTGACA
66 GTTAAAATCAATCATAATTGGATGTT-TGCATTAGGAAACATGAAGTGAATGCCATCCATTGACA
* * * * * * *
47768 AGAAATGTCCATTTATAGTTATTCATACCATCGAAAGCCCTA
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
** * ** * * *
47810 TTACTTACTTTATATCATTTTATAATCTTATAAGTGACTTTAAATCAAAATCTTCTTCATTTTTG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTG
* * * * * * * * * * *
47875 CTTAAAACCAATCCTAATTGGATGTTCT-TATCAAGAAACATGAAG-CAGGTGCCATCAATTAAT
66 GTTAAAATCAATCATAATTGGATGTT-TGCATTAGGAAACATGAAGTGA-ATGCCATCCATTGAC
* * * * * *
47938 AAGAAATGTCCATTTATGGTAACTCATG-TTATCAAAAGCCTTC
129 AAGAAAAGTCCATTTATAGTCACTCATGCCT-TCGAAAGCCTTG
* * * *
47981 TTACTCGTTTTAAATGGTTTTATAATCTTATAAATAATTTTATATCAAAATTTTTTTTC-TTTTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAA-TCTTTTTCATTTTT
** * * * * ** **
48045 CATTAAAATCAATCATAACTAGATCTTGGCATTAGGAAATGTGAAGTGAAAACCATCCATTGACA
65 GGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGACA
* * * * *
48110 AGAAAAGTCCATTTATAGTTAGTCATGCTTTCGATAGTCTTG
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * * *
48152 TAACTCGCTTTAAATGGTTTTATAATCTTGTAAATGATTTTAAATCAAAATCTTCTTCATTGTTG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTG
* * * * * ** *
48217 GTTAGAATCAATCATAATTGGATGTTCT-TATCA-GAAGCATGAAATGGGTGCCATCCATTGATA
66 GTTAAAATCAATCATAATTGGATGTT-TGCATTAGGAAACATGAAGTGAATGCCATCCATTGACA
* * * * * *
48280 AG-AAATTACCATTTGTAGTCACTTATGTCATT-AAAAGCTTTG
130 AGAAAAGT-CCATTTATAGTCACTCATG-CCTTCGAAAGCCTTG
* * * * * *
48322 CTACTCGTTTTAAATAGTTTTATAATCTTTTAAATGATTTCAAATCAAAATC---TTCATTTTTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTG
* * * * * * * * * * * * *
48384 GTGAAAATCGATCGTAATTGGATGTATGCAATGGGAAACGTAAAGTGAATACAATCCACTAATAA
66 GTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGACAA
* * * * *
48449 GAAAAGTCTATTTATAGTAACTTATGCCTTCGAAAACCTTA
131 GAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * * * **** *
48490 TTACTAGCTTTAAATAGTTTTATAATCTTATAAATGATTTCAATTTGTGATCTTTTTCATTTATG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTG
* ** * * * ** * * * *
48555 GTTCAAA-CAAATCATGTTTTGATGTTTGCATCAAGAAATGTGAAGCGAATGTCATTCATTGATA
66 GTTAAAATC-AATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGACA
** * * *
48619 AGAAAAGTATATTTATAGTCACTCATGCCATCAAAAGCCTTA
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * * * ** * * ** *
48661 TTATTTGCTTAAAATGATTTTACCAT-TTATAAATGGTTGTAAATTGAAATCTTTTTCATTGTTG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTG
* ** ** * * ** *
48725 GTTAAAA-CTGATTGTAATTGGCCGTTTAC-TTAGGAAACATGAAGTGAA-ACTTGTTCATTGAC
66 GTTAAAATC-AATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGC-CATCCATTGAC
* ** * * * *
48787 AACAAAAGTTTATTTATAGTCAGTCATACCTTTGAAAGCCTTA
129 AAGAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
* * * * * * *
48830 TTACTCCCTTTTAAATAGTTTTATAATCTTATAAGTGATTTCAAATTAAACTGTTCTTT-ATTTT
1 TTACTCGC-TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTTCATTTT
** ** ** * * * * *
48894 TAATTAAAATCAATTGTAATTGGATGTTTGCAACAGAAAACCTAAAATGCATGCCATCCATTGAC
64 TGGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGAC
* * * * *
48959 AAGAAATGTCCATTTGTAGTCACTTAAGCCATTAG-AAGCCTTG
129 AAGAAAAGTCCATTTATAGTCACTCATGCC-TTCGAAAGCCTTG
**
49002 TTACAT-GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATC-AAATCTTTTTTGTTTTT
1 TTAC-TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTT
* * * * ** *
49065 TGTT-AAATCAATCATAATTGGATATTTGCATTAAGAAACGTGAAGTGAAAACCATCCATTGATA
65 GGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGACA
* * * * * * *
49129 AGAAAAGTCTATTTATAGTTAGTTATGCCTTC-AACAACTTTA
130 AGAAAAGTCCATTTATAGTCACTCATGCCTTCGAA-AGCCTTG
* * *
49171 TAACTCGCTTTAAATGGTTTTATAATCTTATATATAATTTTAAA
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAA
49215 ATATAATTTA
Statistics
Matches: 2648, Mismatches: 682, Indels: 225
0.74 0.19 0.06
Matches are distributed among these distances:
164 5 0.00
165 118 0.04
166 7 0.00
167 39 0.01
168 240 0.09
169 425 0.16
170 590 0.22
171 984 0.37
172 228 0.09
173 11 0.00
174 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (171 bp):
TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTG
GTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTGAATGCCATCCATTGACAA
GAAAAGTCCATTTATAGTCACTCATGCCTTCGAAAGCCTTG
Found at i:47339 original size:339 final size:339
Alignment explanation
Indices: 45603--49214 Score: 1784
Period size: 341 Copynumber: 10.6 Consensus size: 339
45593 GAAAGCTCTA
* * * * *
45603 TTACTTGCTTTAAATGATTTTATAAT-TTATAAATTATTTTAAAT-CAAAATCCTCTTCATTTTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATAAAAAAT--TCTTTATTTTT
** * ** * *** * *
45666 ATTTACAATTGATCATAATTGGATGTTTTTTTTAGGAAACATGAAGT-GAGTGCCATCCATTGAC
64 GGTTAAAATCAATCATAAATGGATGTTTGCATTAGGAAACATGAAATAGA-TGCCATCCAATGAC
* * * ** *
45730 AAAAAATG-CCTATTTATAGTCACTCATGCCATCGAAAGCCTTGTTACTCATTTTAAATGGTTTT
128 AAGAAATGTCC-ATTTATAGTCACTCAAGCCATCAAAAGCCTTGTTACTCGCTTTAAATGATTTT
* * * * * * * ** *
45794 ATAATCTTATAAATGACTTAAAATCAAAATCTTCTTCATTTTCTTGTGAAAATTGATCATAATTA
192 ATAATCTTATAAATGATTTTAAATTAAAATCTTTTTTATTTT-TGGTTAAAATCAATCATAATTG
* * * * ** * * * *
45859 GATGTTTTCAATGGGAAACATAAAGTGAATGCCACCCATTAACAAGAAAAGTCCATTTATAGTCA
256 GATGTTTGC-ATTGGAAACATGAAG-CAAAACCATCCATTGACAAGAAAAGGCTATTTATAGTCA
*** *
45924 CTCATATTTTCGAAAGCCTAG
319 CTCATGCCTTCGAAAGCCTTG
* * * ** * * *
45945 TTACTAGCTTTAAATGGTTTTATAAT-TCTATAAATGATTTCAAATCGAAATCTTGTTCATTTAT
1 TTACTCGCTTTAAATGGTTTTATAATCT-TATAAATGATTTTAAAT-AAAAAATTCTTTATTTTT
* * * ** * * * * ** * * *
46009 GGTT-CAAGCTGATCATGTATGGATGTTTGCATCAAGCAACGTGAAGCCA-ATGTCATCCATTAA
64 GGTTAAAATC-AATCATAAATGGATGTTTGCATTAGGAAACATGAA-ATAGATGCCATCCAATGA
* * * ** * * * * * * ** *
46072 TAAAAAAAGTTTATTTATAGTCACTTATGCCACCGAAAGCCTTGTTATTTGCTCGAAATGATTTG
127 CAAGAAATGTCCATTTATAGTCACTCAAGCCATCAAAAGCCTTGTTACTCGCTTTAAATGATTTT
* * * * *
46137 AT--TTTTGATAAAT-AGTTATAAATTGAAATCTTTTTCATTTTTGGTTAAAAT-AGGTAGCAT-
192 ATAATCTT-ATAAATGA-TTTTAAATTAAAATCTTTTTTATTTTTGGTTAAAATCA---ATCATA
* * * * ***
46197 -TTGGATGTTTGCATTAGATAACATGGAGCATAACCTATCCATTGAAAAGAAAATTTTATTTATA
252 ATTGGATGTTTGCATTGGA-AACATGAAGCAAAACC-ATCCATTGACAAGAAAAGGCTATTTATA
* *
46261 GTCAGTAATGCCTTCGAAAGCCTTG
315 GTCACTCATGCCTTCGAAAGCCTTG
* * * * * * *
46286 TTACTCTCTTTAAATAGTTTTATAATCTTATAAATGATTTCAAATCTAAATATTCTTTATTTGTA
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-AAAAAATTCTTTATTTTTG
* * * * * * * *
46351 GTTAAAATCTATTAT-AATGAGATGTTTGCATTAGGAAACCTGAAGTGGATTCTAT-CAATTCAC
65 GTTAAAATCAATCATAAATG-GATGTTTGCATTAGGAAACATGAAATAGATGCCATCCAA-TGAC
* * * * * * *
46414 ACGAAATGCCCATATGTAGTCACTCAAGCTATTAGAAGCCTTGTTA-TACGCTTTAAATG-TTTT
128 AAGAAATGTCCATTTATAGTCACTCAAGCCATCAAAAGCCTTGTTACT-CGCTTTAAATGATTTT
* * * *
46477 ATAATCTTATAAATAATTTTAAATAAAAATATTTTTTATTTTTAGTTAAAATCAATCATAATTGG
192 ATAATCTTATAAATGATTTTAAATTAAAATCTTTTTTATTTTTGGTTAAAATCAATCATAATTGG
* * * * ** *
46542 ATGTTTGCATCAGGAAACATGAAGTGAAAACCATCCATTGGCAAAAAAAGTTTATTTATAGTCAG
257 ATGTTTGCAT-TGGAAACATGAAG-CAAAACCATCCATTGACAAGAAAAGGCTATTTATAGTCAC
* * *
46607 TCATGCCTTTGATAGTCTTG
320 TCATGCCTTCGAAAGCCTTG
* * * *
46627 TAACTCGCTTTAAATGGTTTTATAATGTTATAAATGATTTTAAA-ATAAAATCTTTTTCATTTTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATAAAAAAT-TCTTT-ATTTTT
* ** * * ** *
46691 TGTTAAAATGGATCATAATTGGATGTTTTCATTAGGAAACATG-AAT-G--G-C-TGGATTGACA
64 GGTTAAAATCAATCATAAATGGATGTTTGCATTAGGAAACATGAAATAGATGCCATCCAATGACA
* ** * *
46750 AGAAATGTCCATTTATGGTCACTCATCCCATCAAAAGCCTAGTTACTTGCTTTAAAT-AGTTTTA
129 AGAAATGTCCATTTATAGTCACTCAAGCCATCAAAAGCCTTGTTACTCGCTTTAAATGA-TTTTA
* * * ** * * *
46814 TGAA-ATTATCAATGATTTTTAATTAAAATCTTCCTTGTTTTTGGTTAAAATCAATTATAATTAG
193 T-AATCTTATAAATGATTTTAAATTAAAATCTTTTTTATTTTTGGTTAAAATCAATCATAATTGG
* * * ** * * ** *
46878 ATGTTTTCAATGGAAAACATGAAGCGAATGCAGTCCACTGACATGAAAAGTTTATTTCTAGTCAC
257 ATGTTTGCATTGG-AAACATGAAGCAAAACCA-TCCATTGACAAGAAAAGGCTATTTATAGTCAC
46943 TCATGCCATT-GAAAGCCTTG
320 TCATGCC-TTCGAAAGCCTTG
* * * * * *
46963 TTAATTGCTTAAAATAGTTTTATAATCTTATAAATGATTTTAAATAAAAAATTTTTTGTTTTTGG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATAAAAAATTCTTTATTTTTGG
* * *
47028 TTAAAA-CAAATTA-AAATGGAGGTTTGCATT-GAGAAACATGAAATAGATGCCATCCAATGA-T
66 TTAAAATC-AATCATAAATGGATGTTTGCATTAG-GAAACATGAAATAGATGCCATCCAATGACA
* * *
47089 AGAAAAAGTCCATTTATAGTCACTCATGCCATCAAAAGCCTTGTTACTCGCTTTAAATGATATTA
129 AG-AAATGTCCATTTATAGTCACTCAAGCCATCAAAAGCCTTGTTACTCGCTTTAAATGATTTTA
* * * *
47154 TAAT-TTATAAATGATTTTAAATTGAAGTCTTTTTTGTTTTTGGTTAAAA-CAGATCATAATTGT
193 TAATCTTATAAATGATTTTAAATTAAAATCTTTTTTATTTTTGGTTAAAATCA-ATCATAATTGG
* * * * * *
47217 ATATTTGCATTGTGAAACATAAAGTAAAAGCCATCCATTGACAAGAGAAGGCAATTTATAGTCAA
257 ATGTTTGCATTG-GAAACATGAAGCAAAA-CCATCCATTGACAAGAAAAGGCTATTTATAGTCAC
* *
47282 TCATGCCTTCGACAGGCTTG
320 TCATGCCTTCGAAAGCCTTG
* * * * * ** *
47302 TTACTCGCTTTAAATGGTTTTACACTCTTACAAATGATTTCAAAT-CAAAA-TCTTCGTATTTGG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATAAAAAATTCTTTATTTTTGG
* * * * * * *
47365 TTAAAATCAATCATAACTAGATGTTTGCATTGGGAAACTTGAAACAGATGGCA-CCGATTGACAA
66 TTAAAATCAATCATAAATGGATGTTTGCATTAGGAAACATGAAATAGATGCCATCC-AATGACAA
* * ** * * *
47429 GAAATGTCCATTTGTAGTCACTAAAGCCATTGAAAGCGTTGTTACAT-GCTTGAAATGGTTTTAT
130 GAAATGTCCATTTATAGTCACTCAAGCCATCAAAAGCCTTGTTAC-TCGCTTTAAATGATTTTAT
* * * * *
47493 AATCTTATAAGTGATTTTAAATTAAAACCTTTTTCATTTTTGGTTAAAATCGATCACAATTGGAT
194 AATCTTATAAATGATTTTAAATTAAAATCTTTTTTATTTTTGGTTAAAATCAATCATAATTGGAT
* * * * * * **
47558 GTTTGCATTATGAAACATGTAGCACAAACTATCTATTGATATG-AAAGGTCCGTTTATAGTCACT
259 GTTTGCATT-GGAAACATGAAGCA-AAACCATCCATTGACAAGAAAAGG-CTATTTATAGTCACT
*
47622 CATGCTTTCGAAAGCCTTG
321 CATGCCTTCGAAAGCCTTG
* * * * * * *
47641 TAACTTGCTTTAAATGGTTTTACAATCTTATAAATGATTTTAAA-ACAACATCCTTT-TGAGTTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATAAAAAATTCTTTAT--TTTT
* * ** * * ** *
47704 CGTTCAAATTGATCAT-ATTTGATGTTCT-CATTAGGAAACAT-AAAGCGAATGCCATCCATTGA
64 GGTTAAAATCAATCATAAATGGATGTT-TGCATTAGGAAACATGAAATAG-ATGCCATCCAATGA
* * * * * ** * *
47766 CAAGAAATGTCCATTTATAGTTATTCATA-CCATCGAAAGCCCTATTACTTACTTTATATCATTT
127 CAAGAAATGTCCATTTATAGTCACTCA-AGCCATCAAAAGCCTTGTTACTCGCTTTAAATGATTT
* * * * * * * *
47830 TATAATCTTATAAGTGACTTTAAATCAAAATCTTCTTCATTTTTGCTTAAAACCAATCCTAATTG
191 TATAATCTTATAAATGATTTTAAATTAAAATCTTTTTTATTTTTGGTTAAAATCAATCATAATTG
* ** *** * * * * * * * *
47895 GATGTTCT-TATCAAGAAACATGAAGCAGGTGCCATCAATTAATAAGAAATGTCCATTTATGGTA
256 GATGTT-TGCAT-TGGAAACATGAAGCA-AAACCATCCATTGACAAGAAAAGGCTATTTATAGTC
* * *
47959 ACTCATG-TTATCAAAAGCCTTC
318 ACTCATGCCT-TCGAAAGCCTTG
* * * ** * * *
47981 TTACTCGTTTTAAATGGTTTTATAATCTTATAAATAATTTTATATCAAAATTTTTTTTCTTTTTC
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-AAAAAATTCTTTATTTTTG
* * * * * ** * ** *
48046 ATTAAAATCAATCATAACTAGATCTTGGCATTAGGAAATGTGAAGT-GAAAACCATCCATTGACA
65 GTTAAAATCAATCATAAATGGATGTTTGCATTAGGAAACATGAAATAG-ATGCCATCCAATGACA
* * * * ** * * * * *
48110 AGAAAAGTCCATTTATAGTTAGTCATGCTTTCGATAGTCTTGTAACTCGCTTTAAATGGTTTTAT
129 AGAAATGTCCATTTATAGTCACTCAAGCCATCAAAAGCCTTGTTACTCGCTTTAAATGATTTTAT
* * * * * *
48175 AATCTTGTAAATGATTTTAAATCAAAATCTTCTTCATTGTTGGTTAGAATCAATCATAATTGGAT
194 AATCTTATAAATGATTTTAAATTAAAATCTTTTTTATTTTTGGTTAAAATCAATCATAATTGGAT
* ** * **** * *** * *
48240 GTTCT-TATCAGAAGCATGAAATG-GGTGCCATCCATTGATAAGAAATTACCATTTGTAGTCACT
259 GTT-TGCATTGGAAACATG-AA-GCAAAACCATCCATTGACAAGAAAAGGCTATTTATAGTCACT
* * * *
48303 TATGTCATT-AAAAGCTTTG
321 CATG-CCTTCGAAAGCCTTG
* * * * * * * *
48322 CTACTCGTTTTAAATAGTTTTATAATCTTTTAAATGATTTCAAAT-CAAAA-TCTTCATTTTTTG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATAAAAAATTCTTTATTTTTGG
* * * * * * * * * * * * *
48385 TGAAAATCGATCGTAATTGGATGTATGCAATGGGAAACGT-AAAGT-GAATACAATCCACTAATA
66 TTAAAATCAATCATAAATGGATGTTTGCATTAGGAAACATGAAA-TAG-ATGCCATCCAATGACA
* * * * * * * *
48448 AGAAAAGTCTATTTATAGTAACTTATGCCTTCGAAAA-CCTTATTACTAGCTTTAAAT-AGTTTT
129 AGAAATGTCCATTTATAGTCACTCAAGCCATC-AAAAGCCTTGTTACTCGCTTTAAATGA-TTTT
* * *** * * * ** *
48511 ATAATCTTATAAATGATTTCAATTTGTGATCTTTTTCATTTATGGTTCAAA-CAAATCATGTTTT
192 ATAATCTTATAAATGATTTTAAATTAAAATCTTTTTTATTTTTGGTTAAAATC-AATCATAATTG
** ** *** * * **
48575 GATGTTTGCATCAAGAAATGTGAAGCGAATGTCATTCATTGATAAGAAAAGTATATTTATAGTCA
256 GATGTTTGCAT-TGGAAACATGAAGC-AAAACCATCCATTGACAAGAAAAGGCTATTTATAGTCA
* * *
48640 CTCATGCCATCAAAAGCCTTA
319 CTCATGCCTTCGAAAGCCTTG
* * * * ** * * ** * *
48661 TTATTTGCTTAAAATGATTTTACCAT-TTATAAATGGTTGTAAAT-TGAAATCTTTTTCATTGTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATAAAAAAT-TCTTT-ATTTTT
* ** * ** * * ** ** * *
48724 GGTTAAAA-CTGATTGTAATTGGCCGTTTAC-TTAGGAAACATGAAGT-GAAACTTGTTCATTGA
64 GGTTAAAATC-AATCATAAATGGATGTTTGCATTAGGAAACATGAAATAGATGC-CATCCAATGA
* * ** * * ** * *
48786 CAACAAAAGTTTATTTATAGTCAGTCATA-CCTTTGAAAGCCTTATTACTCCCTTTTAAAT-AGT
127 CAAGAAATGTCCATTTATAGTCACTCA-AGCCATCAAAAGCCTTGTTACTCGC-TTTAAATGA-T
* * * * * ** **
48849 TTTATAATCTTATAAGTGATTTCAAATTAAACTGTTCTTTATTTTTAATTAAAATCAATTGTAAT
189 TTTATAATCTTATAAATGATTTTAAATTAAAATCTTTTTTATTTTTGGTTAAAATCAATCATAAT
** * * * ** * * * *
48914 TGGATGTTTGCAACAGAAAACCTAAAATGC-ATGCCATCCATTGACAAGAAATGTCCATTTGTAG
254 TGGATGTTTGC-ATTGGAAACAT-GAA-GCAAAACCATCCATTGACAAGAAAAGGCTATTTATAG
* * *
48978 TCACTTAAGCCATTAG-AAGCCTTG
316 TCACTCATGCC-TTCGAAAGCCTTG
* ** * * *
49002 TTACAT-GCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAATCTTTTTTGTTTTTT
1 TTAC-TCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATAAAAAATTCTTTATTTTTG
* * * * * ** * *
49066 GTT-AAATCAATCATAATTGGATATTTGCATTAAGAAACGTGAAGT-GAAAACCATCCATTGATA
65 GTTAAAATCAATCATAAATGGATGTTTGCATTAGGAAACATGAAATAG-ATGCCATCCAATGACA
* * * * * * * * * * *
49129 AGAAAAGTCTATTTATAGTTAGTTATGCCTTCAACAA-CTTTATAACTCGCTTTAAATGGTTTTA
129 AGAAATGTCCATTTATAGTCACTCAAGCCATCAA-AAGCCTTGTTACTCGCTTTAAATGATTTTA
* *
49193 TAATCTTATATATAATTTTAAA
193 TAATCTTATAAATGATTTTAAA
49215 ATATAATTTA
Statistics
Matches: 2510, Mismatches: 638, Indels: 246
0.74 0.19 0.07
Matches are distributed among these distances:
333 1 0.00
334 22 0.01
335 72 0.03
336 159 0.06
337 37 0.01
338 277 0.11
339 393 0.16
340 422 0.17
341 732 0.29
342 264 0.11
343 127 0.05
344 1 0.00
345 3 0.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (339 bp):
TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATAAAAAATTCTTTATTTTTGG
TTAAAATCAATCATAAATGGATGTTTGCATTAGGAAACATGAAATAGATGCCATCCAATGACAAG
AAATGTCCATTTATAGTCACTCAAGCCATCAAAAGCCTTGTTACTCGCTTTAAATGATTTTATAA
TCTTATAAATGATTTTAAATTAAAATCTTTTTTATTTTTGGTTAAAATCAATCATAATTGGATGT
TTGCATTGGAAACATGAAGCAAAACCATCCATTGACAAGAAAAGGCTATTTATAGTCACTCATGC
CTTCGAAAGCCTTG
Found at i:52499 original size:171 final size:171
Alignment explanation
Indices: 52321--52730 Score: 553
Period size: 171 Copynumber: 2.4 Consensus size: 171
52311 ATTTTTTTAC
* **
52321 AATCTTATAAATGATTTTAAAACAAAATACTT-TTTAAGTTTGGTTAAAATTGATCATAATTGGA
1 AATCTTATAAATGATTTTAAATCAAAAT-CTTCTTTATTTTTGGTTAAAATTGATCATAATTGGA
*
52385 TGTTCTCATCAGGAAACATGAAGCAGATGCCATCCATTGACAAGAAATGTCCATTTATAGTCA-C
65 TGTTCTCATCAAGAAACATGAAGCAGATGCCATCCATTGACAAGAAATGTCCATTTATAGT-AGC
*
52449 ACATG-CTATAAAAAGCCCTATTACT-TTCTTTAAAT-GATTTCAT
129 ACATGTC-ATAAAAAGCCCTATTACTCATC-TTAAATAG-TTTCAT
* * *
52492 TATCTTATAAATGATTTTAAATCAAAATCTTCTTTATTTTTGGTTAAAGTCGATCATAATTGGAT
1 AATCTTATAAATGATTTTAAATCAAAATCTTCTTTATTTTTGGTTAAAATTGATCATAATTGGAT
* * * *
52557 GTTCTTATTAAGAAACATGAAGCAGGTGCCATCCATTGACAAGAAATGTCCATTTATAGTAGCTC
66 GTTCTCATCAAGAAACATGAAGCAGATGCCATCCATTGACAAGAAATGTCCATTTATAGTAGCAC
* * * *
52622 ATGTCATCAAAAGCCCTGTTGCTCATCTTAAATAGTTTTAT
131 ATGTCATAAAAAGCCCTATTACTCATCTTAAATAGTTTCAT
* * *
52663 AATCTTATTAATGATTTCAAATCAAAATCTTCTTCATTTTTGGTTAAAATCT-ATCATAATTGGA
1 AATCTTATAAATGATTTTAAATCAAAATCTTCTTTATTTTTGGTTAAAAT-TGATCATAATTGGA
52727 TGTT
65 TGTT
52731 TGCAATGGAA
Statistics
Matches: 211, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
170 4 0.02
171 203 0.96
172 4 0.02
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (171 bp):
AATCTTATAAATGATTTTAAATCAAAATCTTCTTTATTTTTGGTTAAAATTGATCATAATTGGAT
GTTCTCATCAAGAAACATGAAGCAGATGCCATCCATTGACAAGAAATGTCCATTTATAGTAGCAC
ATGTCATAAAAAGCCCTATTACTCATCTTAAATAGTTTCAT
Found at i:53332 original size:170 final size:170
Alignment explanation
Indices: 52243--54113 Score: 603
Period size: 170 Copynumber: 11.1 Consensus size: 170
52233 GAAGCAAAAG
** * * * * ** *
52243 CCATCCATTGATATGAAAAGTCCATTTATAGTTA-TTCATGCCTTTAAAAGCCTTGTAACTCACT
1 CCATCCATTGGCAAGAAACGTCCATTTATAGTCACTT-ATGCCATCGAAAGCCTTGTTACTCACT
* ** * * * * * * * * *
52307 TTACATTTTTTTACAATCTTATAAATGATTTTAAAACAAAATACTTTTTAAGT-TTGGTTAAAAT
65 TTAAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAAT-CTTCTTCATTGTTAGTGAAAAG
** * * *
52371 TGATCATAATTGGATGTTCT-CATCAGGAAACATGAAGC-AGATG
129 CAAACATAATTGGATGTT-TGCATCA-GAAACATAAAGCGA-ATA
* * ** * ** * * **
52414 CCATCCATTGACAAGAAATGTCCATTTATAGTCACACATGCTATAAAAAGCCCTATTACTTTCTT
1 CCATCCATTGGCAAGAAACGTCCATTTATAGTCACTTATGCCATCGAAAGCCTTGTTACTCACTT
* * * * * * * *
52479 TAAATGATTTCATTATCTTATAAATGATTTTAAATCAAAATCTTCTTTATTTTTGGT-TAAAGTC
66 TAAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTCATTGTTAGTGAAAAG-C
* * * * * * *
52543 GATCATAATTGGATGTTCT-TATTAAGAAACATGAAGC-AGGTG
130 AAACATAATTGGATGTT-TGCA-TCAGAAACATAAAGCGA-ATA
* * * * * * *
52585 CCATCCATTGACAAGAAATGTCCATTTATAGT-AGCTCATGTCATCAAAAGCCCTGTTGCTCA-T
1 CCATCCATTGGCAAGAAACGTCCATTTATAGTCA-CTTATGCCATCGAAAGCCTTGTTACTCACT
* * * * * *
52648 CTTAAATAGTTTTATAATCTTATTAATGATTTCAAATCAAAATCTTCTTCATTTTTGGTTAAAAT
65 -TTAAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTCATTGTTAGTGAAAAG
* * * * * *
52713 CTATCATAATTGGATGTTTGCAAT-GGAAACGTAAAGTGAATG
129 CAAACATAATTGGATGTTTGC-ATCAGAAACATAAAGCGAATA
** * * ** * * * * * *
52755 TGATCTACTAACAAAAAAAGTCCACTTACAGTCACTCATGCCTTC-AACAGCCTTGTTACT-AGC
1 CCATCCATTGGCAAGAAACGTCCATTTATAGTCACTTATGCCATCGAA-AGCCTTGTTACTCA-C
* * * * **
52818 TTTAACTGGTTTTATAATCTTATAAATGATTTCTAATCACAATCTTTTTCA-T-TTA-TG--ATT
64 TTTAAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTCATTGTTAGTGAAAAG
* ** * * *
52878 C-AA-ATAGA-T-CATGTTTGCATCAGGAAATTTGAAGCAAATG
129 CAAACATA-ATTGGATGTTTGCATCA-GAAACATAAAGCGAATA
* ** * * * * *
52918 CCATTCATTGATAA-AGAA-GATCCACTTATAGTCACTTGTGCTATCGAAAACCTTGTTATTTC-
1 CCATCCATTGGCAAGA-AACG-TCCATTTATAGTCACTTATGCCATCGAAAGCCTTGTTA-CTCA
** * * ** * * ** * * *
52980 CTCGAAA-GCCTTCTTACT--TGCTT-TAAATAGTTTTGTAATC---TTATAATTGATT-TCAAT
63 CTTTAAATG-GTT-TTA-TAAT-CTTATAAAT-GATTTCAAATCAAAATCTTCTTCATTGTTAGT
** * *** ** * *
53037 TCAAATCTTATTTATAATTGGATGTTTGCATTGGGAAAGC-TAAAGTGCAT-
123 GAAAAGC--AAACATAATTGGATGTTTGCA-TCAGAAA-CATAAAGCGAATA
* * * * * * * *
53087 CCATTCATTGGCAAGAAACGTCCATATGTAGTCACTCAAGCCATTGAAAGCCTTGTTACACGCTT
1 CCATCCATTGGCAAGAAACGTCCATTTATAGTCACTTATGCCATCGAAAGCCTTGTTACTCACTT
* * * *
53152 TAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTCTTCATTGTTAGTTAGAAGCG
66 TAAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTCATTGTTAGTGAAAAGCA
* * ** *
53217 ATCATAATTGGATTTTTTTATCAGAAACATGAAA-CGAATG
131 AACATAATTGGATGTTTGCATCAGAAACAT-AAAGCGAATA
* * * *
53257 CCATCCATTGGCAATAAATGTCCATTTATAGTCACTTATGCCATCGAAAGCCTTATTACTCATTT
1 CCATCCATTGGCAAGAAACGTCCATTTATAGTCACTTATGCCATCGAAAGCCTTGTTACTCACTT
* * *
53322 TAAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTCATTTTTGGTGAAAATCA
66 TAAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTCATTGTTAGTGAAAAGCA
** * *
53387 AACATAATTGGATGTTTGCATGGGAAACGTAAAGTGAATA
131 AACATAATTGGATGTTTGCATCAGAAACATAAAGCGAATA
* * ** * * * *
53427 CAATCCACTAACAAGAAACATCCATTTATAGTCACTTATGCCTTCCAAATCCTTGTTACT-AGCT
1 CCATCCATTGGCAAGAAACGTCCATTTATAGTCACTTATGCCATCGAAAGCCTTGTTACTCA-CT
* * * * *
53491 TT-AATAGTTTTATAATCTTATAAATGATTTCAAATCATAATCTTTTTCATT-TATGGCT-CAAA
65 TTAAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTCATTGT-TAG-TGAAAA
** * * ** * * *
53553 -CAGAACATGTTTGGATGTTAGCATCGGGAAATGTTAAGTGAATG
128 GCA-AACATAATTGGATGTTTGCATC-AGAAACATAAAGCGAATA
* ** * * * * * *
53597 CCATTCATTGATAAGAAAAGTCCATTTATA-TCAACTTGTGCTATCAAAAGCCTTGTTAGTTACT
1 CCATCCATTGGCAAGAAACGTCCATTTATAGTC-ACTTATGCCATCGAAAGCCTTGTTACTCACT
* * ** * * ** * * *
53661 TGACATAATTTTACAAT-TTATAAATGGTTGT-AAATTGAAATATTTTTCA-T-TTA---AAATT
65 TTAAATGGTTTTATAATCTTATAAATGATT-TCAAATCAAAATCTTCTTCATTGTTAGTGAAA-A
* * * * * * * * * *
53719 G-ATA-GTAATTGGCTATTTACATTAGGAAACGTGAAG-TAAAA
128 GCAAACATAATTGGATGTTTGCATCA-GAAACATAAAGCGAATA
*** * * ** * * * * * * *
53760 CCTATCCATTAATAACAAAAAGTTTATTTTTAGTCAGTCATGCCTTCAAAAGCCCTGTTACTCGC
1 CC-ATCCATTGGCAA-GAAACGTCCATTTATAGTCACTTATGCCATCGAAAGCCTTGTTACTCAC
* ** * * * *
53825 TTTAAATGGTTTTATAATCTTCTAAATGATTTCAAATCAAAATCTTCTTTGTTTTTGGTTAAAAT
64 TTTAAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTCATTGTTAGTGAAAAG
*** * * * * * * *
53890 CAATTGTTATTGGATGTTTGCATTAGGAAACTTGAAGTGCATG
129 CAAACATAATTGGATGTTTGCATCA-GAAACATAAAGCGAATA
* ** * * * *
53933 CCAGCCATTTACAAGAAATGTCCATTTATAGTCA-TTCAAGCCATTGGAAGCCTTGTTA--CACG
1 CCATCCATTGGCAAGAAACGTCCATTTATAGTCACTT-ATGCCATCGAAAGCCTTGTTACTCAC-
* * * * * * * *
53995 TTTGAAATGGTTTTATAATATTATAAATAATTTTAAATCAAAA-CTTTTTTATTTTTTGGTCAAA
64 TTT-AAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTCA-TTGTTAGTGAAA
* * * * * * *
54059 ATCAATCATAATTGGGTGTTTGCATCAAGACACATGAAGTGAAAA
127 AGCAAACATAATTGGATGTTTGCATC-AGAAACATAAAGCGAATA
*
54104 TCATCCATTG
1 CCATCCATTG
54114 ATAAGAAAAT
Statistics
Matches: 1286, Mismatches: 330, Indels: 168
0.72 0.18 0.09
Matches are distributed among these distances:
161 7 0.01
162 14 0.01
163 71 0.06
164 50 0.04
165 57 0.04
166 25 0.02
167 3 0.00
168 25 0.02
169 153 0.12
170 438 0.34
171 390 0.30
172 50 0.04
173 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37
Consensus pattern (170 bp):
CCATCCATTGGCAAGAAACGTCCATTTATAGTCACTTATGCCATCGAAAGCCTTGTTACTCACTT
TAAATGGTTTTATAATCTTATAAATGATTTCAAATCAAAATCTTCTTCATTGTTAGTGAAAAGCA
AACATAATTGGATGTTTGCATCAGAAACATAAAGCGAATA
Found at i:57661 original size:170 final size:167
Alignment explanation
Indices: 57425--57808 Score: 409
Period size: 169 Copynumber: 2.3 Consensus size: 167
57415 TGTTACTTGC
* * * *
57425 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTGTTTTTTGTTCAAACA
1 TTTAAATGG-TTTATAATCTTATAAATAATTTTAAATCAAAATCTTTTTATTTTTTCTTAAAACA
* ** * *
57490 GATTACAAATGGATGTTT-TCATCAAGAAA-CATAAAGTGAATG-TCATCCATTGATAAGAAAAG
65 GATCACAAATGGATGTTTGT-AT--AGAAAGCATAAAGCAAAAGCT-ATCCATTGACAAGAAAAG
* *
57552 TCCATTTATAGTCACTCATACCATT-AAAAGCTTTGTTACTCAT
126 ACCATTTATAGTCAATCATACC-TTGAAAAGC-TTGTTACTCAT
* * **
57595 TTTAAATGATATTATAAT-TTGTAAATAATTTTAAATTGAAATCTTTTTTATTTTTTCTTAAAAC
1 TTTAAATGGT-TTATAATCTTATAAATAATTTTAAATCAAAATC-TTTTTATTTTTTCTTAAAAC
* * * *
57659 AGATCATAATTGGATGTTTGTATTGAAAGCATAAAGCAAAAGCTATGCATTGACAAGAAAAGACC
64 AGATCACAAATGGATGTTTGTATAGAAAGCATAAAGCAAAAGCTATCCATTGACAAGAAAAGACC
* *
57724 ATTTATAGTCAATCTTACCTTGGACAAGCTTGTTACTCAT
129 ATTTATAGTCAATCATACCTT-GAAAAGCTTGTTACTCAT
* * * * *
57764 TTTAAATGGTTTATAATCTTACAAGTACTTTCAAATCATAATCTT
1 TTTAAATGGTTTATAATCTTATAAATAATTTTAAATCAAAATCTT
57809 CTCAGTATTT
Statistics
Matches: 176, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
168 15 0.09
169 104 0.59
170 56 0.32
171 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (167 bp):
TTTAAATGGTTTATAATCTTATAAATAATTTTAAATCAAAATCTTTTTATTTTTTCTTAAAACAG
ATCACAAATGGATGTTTGTATAGAAAGCATAAAGCAAAAGCTATCCATTGACAAGAAAAGACCAT
TTATAGTCAATCATACCTTGAAAAGCTTGTTACTCAT
Found at i:61189 original size:16 final size:16
Alignment explanation
Indices: 61147--61196 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
61137 TCACTGATAA
*
61147 ATAAAATATTACTATTT
1 ATAAAATATT-TTATTT
*
61164 -TAATATTATTTTATTT
1 ATAA-AATATTTTATTT
61180 ATAAAATATTTT-TTT
1 ATAAAATATTTTATTT
61195 AT
1 AT
61197 TGAAAAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 5 0.18
16 15 0.54
17 8 0.29
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (16 bp):
ATAAAATATTTTATTT
Found at i:61214 original size:19 final size:19
Alignment explanation
Indices: 61165--61212 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
61155 TTACTATTTT
* *
61165 AATATTATTTTATTTATAA
1 AATATTTTTTTATTGATAA
61184 AATATTTTTTTATTGA-AA
1 AATATTTTTTTATTGATAA
61202 AATATTTTTTT
1 AATATTTTTTT
61213 TACTTGTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
AATATTTTTTTATTGATAA
Found at i:61787 original size:171 final size:168
Alignment explanation
Indices: 61330--64669 Score: 1727
Period size: 171 Copynumber: 19.7 Consensus size: 168
61320 CTTCGCATGG
** * *
61330 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTGCCTCATTTTTGGTTAAAATCAATAATAA
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCT-TTTTA-TTTTGGTTAAAAT-AATCATAA
* ** * * ** * *
61395 TTAGATGTTTTTATTAGGAAATGA-GAAGCGCGTGCCATCCATTGACAAGAAATGTCTATTTATA
63 TTGGATGTTTGCATTAGGAAA-CATGAAGAGAATGCCATCCATTGACAAGAAAAGTCCATTTATA
* * * * * * *
61459 GTTAGTCATGCCATCAAAAGCTTTGTTACT-CCTTTTAAATGT
127 GTCACTCATGCCTTCGAAAGCCTTGTTACTAGC-TTTAAATGA
** * * * * *
61501 TTTTATAATCTTATAACGGATTTCAAATCGAAATCTTCTTCATTTTTAGTTTAAATAGATCATAA
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTTA-TTTTGGTTAAAATA-ATCATAA
* ** * * * * * * *
61566 TTGGATGCTTATAATGGGAAACATAAAGCA-AATGTCATCCACTAATAAGAAAAGTCCATTTATA
63 TTGGATGTTTGCATTAGGAAACATGAAG-AGAATGCCATCCATTGACAAGAAAAGTCCATTTATA
* * *
61630 GTCACTCATGCTTTCGAAACCCTTATTACTAGCTTTAAATGA
127 GTCACTCATGCCTTCGAAAGCCTTGTTACTAGCTTTAAATGA
* * * **
61672 TTTTATAATGTTATAAATGATTTCAAATCAAAATCTTTTATATTTGTGGTTTAAATAGATCATGT
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTT-TATTT-TGGTTAAAATA-ATCATAA
* * * * *
61737 TTAGATGTTTGCATTATGAAACGTGAAGAGAATGCCATCCATTGATAAGAAAAGTTCATTTATAG
63 TTGGATGTTTGCATTAGGAAACATGAAGAGAATGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * *
61802 TCACT-A-GAGCTATCGAAAG-C--ATTACT--C--GAAATGA
128 TCACTCATG-CCT-TCGAAAGCCTTGTTACTAGCTTTAAATGA
*** * * ** * *
61836 AAATATAAT-TTATAAATGGTTGTAAATTGAAATATTTTTCATTTTCAGTTAAAATAGAT-AGTA
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTT-ATTTT-GGTTAAAATA-ATCA-TA
* * * **
61899 ATTGGATGTTTGCATTAGGAAATGA-GAAGCAGAA--CCTATCCATTGACAAAAAAAATTTATTT
62 ATTGGATGTTTGCATTAGGAAA-CATGAAG-AGAATGCC-ATCCATTGACAAGAAAAGTCCATTT
* * * * * *
61961 ATAGTCAGTCATGCCTTGGAAAGCTTTGTTACTCGTTTTAAATTA
124 ATAGTCACTCATGCCTTCGAAAGCCTTGTTACTAGCTTTAAATGA
* * * * * * *
62006 -TTTATAACCTTATCAATGATTTCAAATCAACATCTTCTTTGTTTTTAGTT-AAATCAATTATAA
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTT-ATTTTGGTTAAAAT-AATCATAA
* * * * * ** * * * *
62069 TTGGTTATTTGCATTGGGAAACTTGAAGTGTTTGTCATCCATTGACAAGAAATGTCCATTTGTAC
63 TTGGATGTTTGCATTAGGAAACATGAAGAGAATGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * *
62134 CCACTCAAGCCATTAG-AAGCTTTGTTGC-ACGCTTTAAAT-A
128 TCACTCATGCC-TTCGAAAGCCTTGTTACTA-GCTTTAAATGA
* * *
62174 GTTTTATAATTTTATAAATGATTTTAAATCAAAATCTTTTCTGGTTTTTGTTAAAATCAATCATA
1 -TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTT-T-ATTTTGGTTAAAAT-AATCATA
* * * ** * * * ** *
62239 ATTGAATGTTTTCATCAAAAAACGTGAGGTGAAAACCATCCAATGACAAGAAAA-TCCCATTTAT
62 ATTGGATGTTTGCATTAGGAAACATGAAGAGAATGCCATCCATTGACAAGAAAAGT-CCATTTAT
** * * * *
62303 TTTCAGTCATGCCTTCGACAA-CCTTGTGATTCA-CTTTAAATGG
126 AGTCACTCATGCCTTCGA-AAGCCTTGTTACT-AGCTTTAAATGA
* * * *
62346 TTTTATAATCTTTTAAATGATTTTAAAAT-AAAATCCTTTTCATTTTTGGTTAATATCTATCATA
1 TTTTATAATCTTATAAATGATTTT-AAATCAAAAT-CTTTTTA-TTTTGGTTAAAAT-AATCATA
* * * * * *
62410 ATTGGATGTTCT-CCTTAGGAGACATAAAGCA-AATG-CATCAATTGACTAGAAATA-TCTATTT
62 ATTGGATGTT-TGCATTAGGAAACATGAAG-AGAATGCCATCCATTGACAAGAAA-AGTCCATTT
* * *
62471 ATAGTCACTCATGTCATCGAAAG-CTGTATTACTTA-CTTTAAAT-A
124 ATAGTCACTCATGCCTTCGAAAGCCT-TGTTAC-TAGCTTTAAATGA
* * * * *
62515 GTTTTGTAATCTTGTAAATGATTTTAAAT-AAAATTGTTCTTTGTTTTTGGTTAAAGTCAATCAT
1 -TTTTATAATCTTATAAATGATTTTAAATCAAAA-TCTT-TTT-ATTTTGGTTAAAAT-AATCAT
* * * ** ** * * * *
62579 AATTGGATGTTTCCAATGGGAAATGTGAAGTTAATG-TACTCCATTGATACGAAAAGTCCATTTC
61 AATTGGATGTTTGCATTAGGAAACATGAAGAGAATGCCA-TCCATTGACAAGAAAAGTCCATTTA
* * * ** * *
62643 CAATCACTCATGCCATCGAAAGCCTTGTTACTTTCCTCAAAT-A
125 TAGTCACTCATGCCTTCGAAAGCCTTGTTACTAGCTTTAAATGA
* * * * * * *
62686 GTTCTATAATCTTATAAATGATTTTAAGTCAAAATCTTTTTGTTTTTGGTTGAAACAGATTACAA
1 -TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTT-ATTTTGGTTAAAATA-ATCATAA
* * * * * * *
62751 TTAGATATTTGCATTAGGAAACATGAAGTGGATGCAATCCATTGACAAGAAAAGTCCATTTAGAT
63 TTGGATGTTTGCATTAGGAAACATGAAGAGAATGCCATCCATTGACAAGAAAAGTCCATTTATAG
* * * * *
62816 TAACTTACGCCATT-AAAAGCCTTGTTACTTGCTTTAAATGA
128 TCACTCATGCC-TTCGAAAGCCTTGTTACTAGCTTTAAATGA
* * ** *
62857 TATTATAAT-TTATAAACGATTTTAAATTGAAATCTTTTTGGTTTTTGGTTGAAACA-AATCATA
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTT--ATTTTGGTT-AAA-ATAATCATA
* * * * * * *
62920 ATTGGATGTTTGCATTAAGAAACATAAAGTGAAAGCCATCCATTAATAAGAAAAGACCATTTATT
62 ATTGGATGTTTGCATTAGGAAACATGAAGAGAATGCCATCCATTGACAAGAAAAGTCCATTTA-T
* * * *
62985 A-TCAATCATGCCTTCGACAGGCTTGTTACTAGCTTTAAATGG
126 AGTCACTCATGCCTTCGAAAGCCTTGTTACTAGCTTTAAATGA
* * * * * * * * * *
63027 TTTTATAATCTCACAAATAAATTCAAATCAAATTCTTCTCT-GTTTAGTTAAAATCAATCATAAC
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTTATTTTGGTTAAAAT-AATCATAAT
* * * * ** * * *
63091 CGGATGTTTGCATCAAGAAACCT-AAG-GCATATGCCATTGATTGACAAGAAATGTCTATTTGTA
64 TGGATGTTTGCATTAGGAAACATGAAGAG-A-ATGCCATCCATTGACAAGAAAAGTCCATTTATA
* * * *
63154 GTCACTCAAGCCATT-AAAAACCTTGCTT-C-ATGCTTTAAATGG
127 GTCACTCATGCC-TTCGAAAGCCTTG-TTACTA-GCTTTAAATGA
* * * * *
63196 TTTCATAATCTTATAAATGATTTTAAATCAAAACCTTTTTTGTTCTTAGTTAAAATCAATCACAA
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATC-TTTTTATT-TTGGTTAAAAT-AATCATAA
* ** ** *
63261 TTGGATGTTTTCATTAGGAAATGTGAA-AGAAAAACCATCCATTGACATA-AAAAGTCCACTTAT
63 TTGGATGTTTGCATTAGGAAACATGAAGAG-AATGCCATCCATTGACA-AGAAAAGTCCATTTAT
* * * *
63324 AGTCTCTCATGCCTTTGAAAGCCTTGTAACTCA-C--T-CATGA
126 AGTCACTCATGCCTTCGAAAGCCTTGTTACT-AGCTTTAAATGA
*
63364 TTTTATAA---TAT---T-A----AAA-CAAAATCTTTTTCATTTTTGGTTAAAATTGATCATAA
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTT-A-TTTTGGTTAAAA-TAATCATAA
* * * *
63417 TTGGATGTTCT-CATTAGAAAACATGAAGCGAATGCCATCCATTGGACAACAAATGTCCATTTAT
63 TTGGATGTT-TGCATTAGGAAACATGAAGAGAATGCCATCCATT-GACAAGAAAAGTCCATTTAT
* * * * * *
63481 AGTAAGTCATGCCATCAAAACCCTTGTTACTCA-CTTTAAATGG
126 AGTCACTCATGCCTTCGAAAGCCTTGTTACT-AGCTTTAAATGA
* * *
63524 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTCTTCATATTTGGTTAAAATCCATCCTAA
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTTAT-TTTGGTTAAAAT-AATCATAA
* * * * * * *
63589 TTTGATGTTCT-TATCAAGAAACATG--GAGCAAGTGCCATGCATTGATAAGAAATGTCCATTTA
63 TTGGATGTT-TGCATTAGGAAACATGAAGAG-AA-TGCCATCCATTGACAAGAAAAGTCCATTTA
** * * * * *
63651 TAGTCACTCATGCAATCGAAAGCCTTATTCCTTGTTTTAAATGG
125 TAGTCACTCATGCCTTCGAAAGCCTTGTTACTAGCTTTAAATGA
*
63695 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTCTTTATTTTTGGTTAAAATAAATCATAG
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTTA-TTTTGGTTAAAAT-AATCATAA
* * * * * * * *
63760 TTGGATGTTTGCAATGGGAAACATAAAGCGAATGCTATCTACTAACAAG-AAAGTTCCCATTTAT
63 TTGGATGTTTGCATTAGGAAACATGAAGAGAATGCCATCCATTGACAAGAAAAG-T-CCATTTAT
* * * * * *
63824 AGTCTCTCATGCCTTCAAAAGCTTTGCTACTAGTTTTAAATGG
126 AGTCACTCATGCCTTCGAAAGCCTTGTTACTAGCTTTAAATGA
* * *
63867 TTTTATAATCTTATAAATGATTTCAAATCAAAATATTTTTCATTTATGGTTCAAACA-AATCATG
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTT-ATTT-TGGTT-AAA-ATAATCATA
* * * * * ** * *
63931 TTTGGATGTTTGCGTCAGGAAACGTGAAGCGAATGATATCAATTGATAAGAAAAGTCCATTTATA
62 ATTGGATGTTTGCATTAGGAAACATGAAGAGAATGCCATCCATTGACAAGAAAAGTCCATTTATA
** * * * * *
63996 GTCACTTTTGCCATCGAAAAACCTTATTAGTTA-CTTGAAATGA
127 GTCACTCATGCCTTCG-AAAGCCTTGTTA-CTAGCTTTAAATGA
* * * ** ** *
64039 TTTTATAAT-TTATGAAT-AGCTGTAAATTGAAATCTTTTCGT-TTTTACTTAAAACATAT-AGT
1 TTTTATAATCTTATAAATGA-TTTTAAATCAAAATCTTTT--TATTTTGGTTAAAATA-ATCA-T
* * * * * **
64100 AATT--A-G---ACATTAGGAAACCTGAAGTGAA-ACCTATCCATTGATAAGAAAAGTTTATTTA
61 AATTGGATGTTTGCATTAGGAAACATGAAGAGAATGCC-ATCCATTGACAAGAAAAGTCCATTTA
** * * * * * *
64158 TAGTCGGTCATACCTT-GTAAAAGTCTTATTTCTTGCTTTAAATGG
125 TAGTCACTCATGCCTTCG--AAAGCCTTGTTACTAGCTTTAAATGA
** * * *
64203 TTTTATAATCTTATAAACAATTTTAAATCAAAATCTTCTTTGTTTCTTGTTAAAATCAATTA-AT
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTT-TTTATTT-TGGTTAAAAT-AATCATA-
* * * ** ** ** * *
64267 ATTGGATGATTGCATTAGGAAACCTGAAGTGTTTATCATCTGTTGACAAGAAATGTCCATTTGTA
62 ATTGGATGTTTGCATTAGGAAACATGAAGAGAATGCCATCCATTGACAAGAAAAGTCCATTTATA
* * * *
64332 GTCACTTAAGCCATTAGAAA-TCTTGTTAC-ATGCTTTAAAT-A
127 GTCACTCATGCC-TTCGAAAGCCTTGTTACTA-GCTTTAAATGA
* * * * *
64373 GTTTTATTAA-CTTATAAATGATTCTAAATCATAATCGTTTTTGTTTTTGGTTAGAATTGATCAT
1 -TTTTA-TAATCTTATAAATGATTTTAAATCAAAATC-TTTTT-ATTTTGGTTA-AAATAATCAT
* * ** * * * * *
64437 AATTGGATGTTTACATTAAGAAATGTGAAGTGAAAT-CTATCCATTAATAAGAAAAGTACATTTA
61 AATTGGATGTTTGCATTAGGAAACATGAAGAG-AATGCCATCCATTGACAAGAAAAGTCCATTTA
* * * * *
64501 TAGTTAGTCATGCCTTC-AATAGCCTTATAACTCA-CTTTAAATGG
125 TAGTCACTCATGCCTTCGAA-AGCCTTGTTACT-AGCTTTAAATGA
* * * * ** * *
64545 TTTTATAATCTTCTAAATAATTTTAAAACAAAATCATTTTATTTTTTATTAAAACATATTATAAT
1 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTA-TTTTGGTTAAAATA-ATCATAAT
* * * *
64610 TGGATG-TTGCATTCGGAAACATGAAGCGAATGCCAGCCATTGACAAGAAAAGGCCATTTA
64 TGGATGTTTGCATTAGGAAACATGAAGAGAATGCCATCCATTGACAAGAAAAGTCCATTTA
64670 AAAATAATTT
Statistics
Matches: 2415, Mismatches: 577, Indels: 356
0.72 0.17 0.11
Matches are distributed among these distances:
155 5 0.00
156 55 0.02
157 50 0.02
159 1 0.00
160 11 0.00
161 1 0.00
162 6 0.00
163 102 0.04
164 97 0.04
165 27 0.01
166 22 0.01
167 6 0.00
168 34 0.01
169 293 0.12
170 468 0.19
171 912 0.38
172 302 0.13
173 21 0.01
174 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (168 bp):
TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTATTTTGGTTAAAATAATCATAATTG
GATGTTTGCATTAGGAAACATGAAGAGAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCA
CTCATGCCTTCGAAAGCCTTGTTACTAGCTTTAAATGA
Found at i:64045 original size:172 final size:169
Alignment explanation
Indices: 63410--64051 Score: 477
Period size: 172 Copynumber: 3.7 Consensus size: 169
63400 GTTAAAATTG
* * * * ** * * * *
63410 ATCATAATTGGATGTTCT-CATTAGAAAACATGAAGCGAATGCCATCCATTGGACAACAAATGTC
1 ATCATAGTTGGATGTT-TGCAATAGGAAACATAAAGCGAATGATATCAATT-GATAAGAAAAGTC
* * * * *
63474 CATTTATAGTAAGTCATGCCATC-AAAACCCTTGTTACTCACTTTAAATGGTTTTATAATCTTAT
64 CATTTATAGTCACTCATGCCATCGAAAAGCCTTATTAGT---TTTAAATGGTTTTATAATCTTAT
* * * *
63538 AAATGATTTTAAATCAAAATCTTCTTCATATT-TGGTTAAAATC-C
126 AAATGATTTCAAATCAAAATATTCTTTAT-TTATGGTTAAAA-CAA
* * * * * ** ** *
63582 ATCCTAATTTGATG-TT-CTTATCAAGAAACATGGAGC-AAGTGCCATGC-ATTGATAAGAAATG
1 ATCATAGTTGGATGTTTGC-AAT-AGGAAACATAAAGCGAA-TGATAT-CAATTGATAAGAAAAG
* *
63643 TCCATTTATAGTCACTCATGCAATCG-AAAGCCTTATTCCTTGTTTTAAATGGTTTTATAATCTT
62 TCCATTTATAGTCACTCATGCCATCGAAAAGCCTTA-T--TAGTTTTAAATGGTTTTATAATCTT
* * * *
63707 ATAAATGATTTTAAATCAAAATCTTCTTTATTTTTGGTTAAAATAA
124 ATAAATGATTTCAAATCAAAATATTCTTTATTTATGGTTAAAACAA
* * * * * *
63753 ATCATAGTTGGATGTTTGCAATGGGAAACATAAAGCGAATGCTATCTACTAACAAG-AAAGTTCC
1 ATCATAGTTGGATGTTTGCAATAGGAAACATAAAGCGAATGATATCAATTGATAAGAAAAG-T-C
* * * *
63817 CATTTATAGTCTCTCATGCCTTC-AAAAGCTTTGCTACTAGTTTTAAATGGTTTTATAATCTTAT
64 CATTTATAGTCACTCATGCCATCGAAAAGC-CT--TATTAGTTTTAAATGGTTTTATAATCTTAT
*
63881 AAATGATTTCAAATCAAAATATT-TTTCATTTATGGTTCAAACAA
126 AAATGATTTCAAATCAAAATATTCTTT-ATTTATGGTTAAAACAA
* * *
63925 ATCAT-GTTTGGATGTTTGC-GTCAGGAAACGTGAAGCGAATGATATCAATTGATAAGAAAAGTC
1 ATCATAG-TTGGATGTTTGCAAT-AGGAAACATAAAGCGAATGATATCAATTGATAAGAAAAGTC
** * *
63988 CATTTATAGTCACTTTTGCCATCGAAAAACCTTATTAGTTACTTGAAATGATTTTATAAT-TTAT
64 CATTTATAGTCACTCATGCCATCGAAAAGCCTTATTAGTT--TT-AAATGGTTTTATAATCTTAT
64052 GAATAGCTGT
Statistics
Matches: 382, Mismatches: 60, Indels: 57
0.77 0.12 0.11
Matches are distributed among these distances:
169 7 0.02
170 8 0.02
171 167 0.44
172 189 0.49
173 7 0.02
174 2 0.01
175 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37
Consensus pattern (169 bp):
ATCATAGTTGGATGTTTGCAATAGGAAACATAAAGCGAATGATATCAATTGATAAGAAAAGTCCA
TTTATAGTCACTCATGCCATCGAAAAGCCTTATTAGTTTTAAATGGTTTTATAATCTTATAAATG
ATTTCAAATCAAAATATTCTTTATTTATGGTTAAAACAA
Found at i:64074 original size:343 final size:343
Alignment explanation
Indices: 61330--64076 Score: 815
Period size: 340 Copynumber: 8.1 Consensus size: 343
61320 CTTCGCATGG
* * *** * *
61330 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTGCCTCATTTTTGGTTAAAATCAATAATAA
1 TTTTATAATCTTATAAATGACTGTAAATCAAAATCTTTTTCATTTTTGGTTAAAATAAATCATAA
* * * * * ** * * *
61395 TTAGATGTTTTTATTAG-GAA-ATGAGAAGCGCGTGCCATCCATTG-ACAAGAAATGTCTATTTA
66 TTGGATGTTCTCAATAGAAAACAT-A-AAGCGAATGCCATCCACTGAACAACAAATGTCCATTTA
* * * * * * **
61457 TAGTTAGTCATGCCATCAAAAGCTTTGTTACTC-CTTTTAAATGTTTTTATAATCTTATAACGGA
129 TAGTAACTCATGCCATCAAAACCCTTGCTACTCAC-TTTAAATGGTTTTATAATCTTATAAATGA
* * * * * * * * **
61521 TTTCAAATCGAAATCTTCTTCATTTTTAGTTTAAAT-AGATCATAATTGGATGCTTATAAT-GGG
193 TTTCAAATCAAAATATTCTTCATATTTGGTTAAAATCA-ATCATAATTTGATG-TTCTCATCAAG
* * * * * * **
61584 AAACATAAAGCAAATGTCATCCACTAATAAGAAAAGTCCATTTATAGTCACTCATGCTTTCGAAA
256 AAACATGAAGCAAGTGACATGCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCAATCGAAA
* *
61649 CCCTTATTAC-TAGCTTTAAATGA
321 ACCTTATTACTTA-CTTGAAATGA
* * * * *
61672 TTTTATAATGTTATAAATGA-TTTCAAATCAAAATCTTTTAT-ATTTGTGGTTTAAATAGATCAT
1 TTTTATAATCTTATAAATGACTGT-AAATCAAAATCTTTT-TCATTTTTGGTTAAAATAAATCAT
** * * * * * * * * * *
61735 GTTTAGATGTT-TGCATTATG-AAACGTGAAGAGAATGCCATCCATTG-ATAAGAAAAGTTCATT
64 AATTGGATGTTCT-CAATA-GAAAACATAAAGCGAATGCCATCCACTGAACAACAAATGTCCATT
* * * * * ** ****
61797 TATAGTCACT-AGAGCTATCGAAA-----GC-A-TTACTCGAAATGAAAATATAAT-TTATAAAT
127 TATAGTAACTCA-TGCCATCAAAACCCTTGCTACTCACTTTAAATGGTTTTATAATCTTATAAAT
* ** * * *
61853 GGTTGT-AAATTGAAATATTTTTCAT-TTTCAGTTAAAAT-AGAT-AGTAATTGGATGTT-TGCA
191 GATT-TCAAATCAAAATATTCTTCATATTT-GGTTAAAATCA-ATCA-TAATTTGATGTTCT-CA
* * * * * * * * ** *
61913 TTAGGAAATGA-GAAGC-AG-AACCTATCCATTGACAAAAAAAATTTATTTATAGTCAGTCATGC
251 TCAAGAAA-CATGAAGCAAGTGA-C-ATGCATTGATAAGAAAAGTCCATTTATAGTCACTCATGC
** * * * * *** * *
61975 CTTGGAAAGCTTTGTTACTCGTTTTAAATTA
313 AATCGAAAACCTTATTACTTACTTGAAATGA
* * * * * * * *
62006 -TTTATAACCTTATCAATGA-TTTCAAATCAACATCTTCTTT-GTTTTTAGTT-AAATCAATTAT
1 TTTTATAATCTTATAAATGACTGT-AAATCAAAATCTT-TTTCATTTTTGGTTAAAATAAATCAT
* * * * * * * * ** * * *
62067 AATTGGTTATT-TGCATTGGGAAACTTGAAGTGTTTGTCATCCATTG-ACAAGAAATGTCCATTT
64 AATTGGATGTTCT-CAATAGAAAACATAAAGCGAATGCCATCCACTGAACAACAAATGTCCATTT
* *** * * * * * * * * * * *
62130 GTACCCACTCAAGCCATTAGAAGCTTTGTTGCACGCTTTAAATAGTTTTATAATTTTATAAATGA
128 ATAGTAACTCATGCCATCAAAACCCTTGCTACTCACTTTAAATGGTTTTATAATCTTATAAATGA
* * * * *
62195 TTTTAAATCAAAATCTT-TTC-TGGTTTTTGTTAAAATCAATCATAA-TTGAATGTTTTCATCAA
193 TTTCAAATCAAAATATTCTTCAT--ATTTGGTTAAAATCAATCATAATTTG-ATGTTCTCATCAA
* * * * * * * * ** * **
62257 AAAACGTGAGGTGAA--AACCATCCAATGACAAGAAAA-TCCCATTTATTTTCAGTCATGCCTTC
255 GAAACATGAAG-CAAGTGA-CATGCATTGATAAGAAAAGT-CCATTTATAGTCACTCATGCAATC
* * * * *
62319 GACAACCTTGTGA-TTCACTTTAAATGG
317 GAAAACCTTATTACTT-ACTTGAAATGA
* * * * * **
62346 TTTTATAATCTTTTAAATGATTTTAAAAT-AAAATCCTTTTCATTTTTGGTTAATATCTATCATA
1 TTTTATAATCTTATAAATGACTGT-AAATCAAAATCTTTTTCATTTTTGGTTAAAATAAATCATA
** * * * * * * * * *
62410 ATTGGATGTTCTCCTTAGGAGACATAAAGCAAATG-CATCAATTG-ACTAGAAATATCTATTTAT
65 ATTGGATGTTCTCAATAGAAAACATAAAGCGAATGCCATCCACTGAACAACAAATGTCCATTTAT
* * * * ** * * * *
62473 AGTCACTCATGTCATCGAAA-GCTGTATTACTTACTTTAAATAGTTTTGTAATCTTGTAAATGAT
130 AGTAACTCATGCCATCAAAACCCT-TGCTACTCACTTTAAATGGTTTTATAATCTTATAAATGAT
* * ** * * *
62537 TTTAAAT-AAAATTGTTCTTTGTTTTTGGTTAAAGTCAATCATAATTGGATGTT-TC--CAATGG
194 TTCAAATCAAAA-TATTCTTCATATTTGGTTAAAATCAATCATAATTTGATGTTCTCATCAA---
** * * * ** * *
62598 GAAATGTGAAGTTAA-TGTAC-TCCATTGATACGAAAAGTCCATTTCCAATCACTCATGCCATCG
255 GAAACATGAAG-CAAGTG-ACATGCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCAATCG
* * * * *
62661 AAAGCCTTGTTACTTTCCTCAAAT-A
318 AAAACCTTATTACTTACTTGAAATGA
* * * * * * * * * *
62686 GTTCTATAATCTTATAAATGATTTTAAGTCAAAATCTTTTT-GTTTTTGGTTGAAACAGATTACA
1 -TTTTATAATCTTATAAATGACTGTAAATCAAAATCTTTTTCATTTTTGGTTAAAATAAATCATA
* * * * * * * * * * *
62750 ATTAGATATT-TGCATTAGGAAACATGAAGTGGATGCAATCCATTG-ACAAGAAAAGTCCATTTA
65 ATTGGATGTTCT-CAATAGAAAACATAAAGCGAATGCCATCCACTGAACAACAAATGTCCATTTA
* * * * * * * ** * * *
62813 GATTAACTTACGCCATTAAAAGCCTTGTTACTTGCTTTAAATGATATTATAAT-TTATAAACGAT
129 TAGTAACTCATGCCATCAAAACCCTTGCTACTCACTTTAAATGGTTTTATAATCTTATAAATGAT
* ** * * ** * * * *
62877 TTTAAATTGAAATCTTTTTGGTTTTTGGTTGAAA-CAAATCATAATTGGATGTT-TGCATTAAGA
194 TTCAAATCAAAATATTCTTCATATTTGGTTAAAATC-AATCATAATTTGATGTTCT-CATCAAGA
* * * * * * * * ** *
62940 AACATAAAGTGAA-AGCCATCCATTAATAAGAAAAGACCATTTATTA-TCAATCATGCCTTCGAC
257 AACATGAAG-CAAGTGACATGCATTGATAAGAAAAGTCCATTTA-TAGTCACTCATGCAATCGAA
** * * *
63003 AGGCTTGTTAC-TAGCTTTAAATGG
320 AACCTTATTACTTA-CTTGAAATGA
* * * * * * * * *
63027 TTTTATAATCTCACAAATAAAT-TCAAATCAAATTC-TTCTC-TGTTTAGTTAAAATCAATCATA
1 TTTTATAATCTTATAAATGACTGT-AAATCAAAATCTTTTTCATTTTTGGTTAAAATAAATCATA
** * * ** * * *
63089 ACCGGATGTT-TGC-ATCA-AGAAACCTAAGGC-ATATGCCATTGATTG-ACAAGAAATGTCTAT
65 ATTGGATGTTCT-CAAT-AGA-AAACATAAAGCGA-ATGCCATCCACTGAACAACAAATGTCCAT
* * * * * *
63149 TTGTAGTCACTCAAGCCATTAAAAACCTTGCT--TCATGCTTTAAATGGTTTCATAATCTTATAA
126 TTATAGTAACTCATGCCATCAAAACCCTTGCTACTCA--CTTTAAATGGTTTTATAATCTTATAA
* ** * ** * * * * *
63212 ATGATTTTAAATCAAAACCTTTTTTGT-TCTTAGTTAAAATCAATCACAATTGGATGTTTTCATT
189 ATGATTTCAAATCAAAATATTCTTCATAT-TTGGTTAAAATCAATCATAATTTGATGTTCTCATC
* ** ** * * * * **
63276 AGGAAATGTGAAAG-AA-AAACCATCCATTGACATA-AAAAGTCCACTTATAGTCTCTCATGCCT
253 AAGAAACATG-AAGCAAGTGA-CATGCATTGATA-AGAAAAGTCCATTTATAGTCACTCATGCAA
* * * * * *
63338 TTGAAAGCCTTGTAACTCAC-T--CATGA
315 TCGAAAACCTTATTACTTACTTGAAATGA
**
63364 TTTTATAA---TAT---T-A----AAA-CAAAATCTTTTTCATTTTTGGTTAAAATTGATCATAA
1 TTTTATAATCTTATAAATGACTGTAAATCAAAATCTTTTTCATTTTTGGTTAAAATAAATCATAA
* * * *
63417 TTGGATGTTCTCATTAGAAAACATGAAGCGAATGCCATCCATTGGACAACAAATGTCCATTTATA
66 TTGGATGTTCTCAATAGAAAACATAAAGCGAATGCCATCCACTGAACAACAAATGTCCATTTATA
* *
63482 GTAAGTCATGCCATCAAAACCCTTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTT
131 GTAACTCATGCCATCAAAACCCTTGCTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTT
* * * * *
63547 TAAATCAAAATCTTCTTCATATTTGGTTAAAATCCATCCTAATTTGATGTTCTTATCAAGAAACA
196 CAAATCAAAATATTCTTCATATTTGGTTAAAATCAATCATAATTTGATGTTCTCATCAAGAAACA
* * * *
63612 TGGAGCAAGTGCCATGCATTGATAAGAAATGTCCATTTATAGTCACTCATGCAATCGAAAGCCTT
261 TGAAGCAAGTGACATGCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCAATCGAAAACCTT
* ** * *
63677 ATTCCTTGTTTTAAATGG
326 ATTACTTACTTGAAATGA
* *
63695 TTTTATAATCTTATAAATGATTTTAAATCAAAATCTTCTTT-ATTTTTGGTTAAAATAAATCATA
1 TTTTATAATCTTATAAATGACTGTAAATCAAAATCTT-TTTCATTTTTGGTTAAAATAAATCATA
* * * * * *
63759 GTTGGATGTT-TGCAATGGGAAACATAAAGCGAATGCTATCTACT-AACAAGAAA-GTTCCCATT
65 ATTGGATGTTCT-CAATAGAAAACATAAAGCGAATGCCATCCACTGAACAACAAATG-T-CCATT
** * * * *
63821 TATAGTCTCTCATGCCTTCAAAAGCTTTGCTACT-AGTTTTAAATGGTTTTATAATCTTATAAAT
127 TATAGTAACTCATGCCATCAAAACCCTTGCTACTCA-CTTTAAATGGTTTTATAATCTTATAAAT
* * * *
63885 GATTTCAAATCAAAATATTTTTCAT-TTATGGTTCAAA-CAAATCAT-GTTTGGATGTT-TGCGT
191 GATTTCAAATCAAAATATTCTTCATATT-TGGTTAAAATC-AATCATAATTT-GATGTTCT-CAT
* * * ** *
63946 CAGGAAACGTGAAGCGAA-TGATAT-CAATTGATAAGAAAAGTCCATTTATAGTCACTTTTGCCA
252 CAAGAAACATGAAGC-AAGTGACATGC-ATTGATAAGAAAAGTCCATTTATAGTCACTCATGCAA
*
64009 TCGAAAAACCTTATTAGTTACTTGAAATGA
315 TCG-AAAACCTTATTACTTACTTGAAATGA
* **
64039 TTTTATAAT-TTATGAAT-AGCTGTAAATTGAAATCTTTT
1 TTTTATAATCTTATAAATGA-CTGTAAATCAAAATCTTTT
64077 CGTTTTTACT
Statistics
Matches: 1817, Mismatches: 460, Indels: 256
0.72 0.18 0.10
Matches are distributed among these distances:
325 6 0.00
326 7 0.00
327 50 0.03
328 172 0.09
329 2 0.00
330 4 0.00
331 13 0.01
332 69 0.04
333 51 0.03
334 114 0.06
335 15 0.01
336 2 0.00
337 15 0.01
338 6 0.00
339 129 0.07
340 398 0.22
341 307 0.17
342 178 0.10
343 245 0.13
344 34 0.02
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (343 bp):
TTTTATAATCTTATAAATGACTGTAAATCAAAATCTTTTTCATTTTTGGTTAAAATAAATCATAA
TTGGATGTTCTCAATAGAAAACATAAAGCGAATGCCATCCACTGAACAACAAATGTCCATTTATA
GTAACTCATGCCATCAAAACCCTTGCTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTT
CAAATCAAAATATTCTTCATATTTGGTTAAAATCAATCATAATTTGATGTTCTCATCAAGAAACA
TGAAGCAAGTGACATGCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCAATCGAAAACCTT
ATTACTTACTTGAAATGA
Found at i:69521 original size:20 final size:20
Alignment explanation
Indices: 69496--69534 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
69486 ACTAATGTCA
69496 GGGCATTGTA-AAAGACACCT
1 GGGCATTG-AGAAAGACACCT
69516 GGGCATTGAGAAAGACACC
1 GGGCATTGAGAAAGACACC
69535 AACCATGGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.36, C:0.21, G:0.28, T:0.15
Consensus pattern (20 bp):
GGGCATTGAGAAAGACACCT
Found at i:70264 original size:171 final size:170
Alignment explanation
Indices: 69975--70583 Score: 579
Period size: 171 Copynumber: 3.6 Consensus size: 170
69965 GTATCACAGG
* * * *
69975 TGCCATCCATTGACAA-AAAATGTTCATTTATAG-CTACTTATGCCATTGAAAGCTTTGTTGCTC
1 TGCCATCCATTGACAAGAAAA-GTCCATTTATAGTC-ACTCATGCCATTGAAAGCCTTGTTACT-
* * *
70038 A-TTTTAAATGGTTTTACAATCTTATAAATGATTTTAAATCAAAATCTTCTTCATTTTTAGTTAA
63 AGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTAGTTAA
* * * * * *
70102 AATATATCATAGTTGGATGTTTGCAATGGGAAACTTAAAGCGTA
128 AACAGATCATAGTTGGATGTTTGCATTGGGAAACATGAAGTG-A
* * * *
70146 TGCCATCCACTAACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTAAAAGCCTTGTTACTAGC
1 TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATTGAAAGCCTTGTTACTAGC
* * * * * *
70211 TTTAAATGGTTTTAAAATCTTATAAATGATTTCATATCAAAATCTTTTTCATTTATGGTTCAAAC
66 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTAGTTAAAAC
*
70276 AGATCAT-GTTTGGATGCTTGCATTGGGAAACATGAAGTGAA
131 AGATCATAG-TTGGATGTTTGCATTGGGAAACATGAAGTG-A
** * * * * * * * * *
70317 TGCCATCTGTTTATATGAAAAGTCCATTTATATTCACTCATGTCATCGTAAGCCTTGTTAGTTGC
1 TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATTGAAAGCCTTGTTACTAGC
** **
70382 TCGAAATAATTTTATAAT-TTATAAATG-TTTTAAAT-AGAAATCTTTTTCA-TTTTAGGTTAAA
66 TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCA-AAATCTTTTTCATTTTTA-GTTAAA
* * ** *
70443 ACAGATCATAATTGGATGTTTACATTAAGAAACGTGAAGTGA
129 ACAGATCATAGTTGGATGTTTGCATTGGGAAACATGAAGTGA
** * ** * * * * *
70485 AACCATCCATTGACAAGATAAGTTTATTTATAGTTAGTCACGCC-TTCTAAAGCCTTGTTACTCG
1 TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATT-GAAAGCCTTGTTACTAG
70549 CTTTAAATGGTTTTATAATCTTATAAATGAGTTTT
65 CTTTAAATGGTTTTATAATCTTATAAATGA-TTTT
70584 GTAACACCCG
Statistics
Matches: 349, Mismatches: 78, Indels: 22
0.78 0.17 0.05
Matches are distributed among these distances:
167 1 0.00
168 62 0.18
169 66 0.19
170 11 0.03
171 204 0.58
172 5 0.01
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (170 bp):
TGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATTGAAAGCCTTGTTACTAGC
TTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTAGTTAAAAC
AGATCATAGTTGGATGTTTGCATTGGGAAACATGAAGTGA
Found at i:74035 original size:170 final size:170
Alignment explanation
Indices: 73511--74628 Score: 601
Period size: 170 Copynumber: 6.6 Consensus size: 170
73501 CGCCCATCCT
* * * * * * *
73511 TTTATAGTCACTTATGCCATCGAAAGCCTTGTTACACA-CTTTAAATG-GTTTAATAATCTTATA
1 TTTATAGTCACTCATGCCTTCGAAAACCCTGTTACTCATCTATAAA-GAGTTTTATAATCTTATA
* * ** * *
73574 AATGATTTTAAATCAAAAGCATTTTTGGTTTTGGTAAAAATCAATCATAATTGAATGTTTGCATT
65 AATGATTTTAAATCGAAATC-TTTTTATTTTTGGTTAAAATCAATCATAATTGGATGTTTGCATT
* * *
73639 GAGAAATGTGAAACGAATGCCATCATTAATAAGAAAAGTTTA
129 GAGAAATGTGAAACGGATGCCATCATTTATAAGAAAAGTTCA
* * * * * * *
73681 TTTATAGTCACTCATGCCTTCGAAAA-TCTAATTA-TTAGCTTTAAATAGTTTTATGCA-CTTAT
1 TTTATAGTCACTCATGCCTTCGAAAACCCT-GTTACTCATCTATAAAGAGTTTTAT-AATCTTAT
* * * * * ** *
73743 AAATGATGTTAAA-CTGAAATCCTTTTGTTTTTGCTTCAAAT-AGATCATAATTGGACATTTGAA
64 AAATGATTTTAAATC-GAAATCTTTTTATTTTTGGTTAAAATCA-ATCATAATTGGATGTTTGCA
* * * * ** *
73806 TT-AGAAAATGTGAAGCAGATGCTATC--TT-T-GGACTAGTCCA
127 TTGAG-AAATGTGAAACGGATGCCATCATTTATAAGAAAAGTTCA
** * **
73846 TTTATAGTCGGTCATGCCTTTGAAAACCCTGTTACTCA-CTAGGAAGAGTTTTATAATCTTATAA
1 TTTATAGTCACTCATGCCTTCGAAAACCCTGTTACTCATCTATAAAGAGTTTTATAATCTTATAA
* ** * *
73910 ATGATTTTAAATCAAAATCTTTTTCATTTTTTCTTGAAATCAATCATAATTGGATGTTTGTATTG
66 ATGATTTTAAATCGAAATCTTTTT-ATTTTTGGTTAAAATCAATCATAATTGGATGTTTGCATTG
* * * *
73975 AGAAACGAGAAGCGGATGCCATCCATTTACAAG-AAAGTTCA
130 AGAAATGTGAAACGGATGCCAT-CATTTATAAGAAAAGTTCA
* * * * *
74016 TTTATAGTCACTCATGCCTTC-AAAAGCCTTGTTACTCAT-TTTAAA-AGATTTTATCA-GTTAC
1 TTTATAGTCACTCATGCCTTCGAAAA-CCCTGTTACTCATCTATAAAGAG-TTTTATAATCTTAT
* * * * *
74077 AAATGATTTTAGATTGAACTCTTTTTCACTTTTGGTTAAAA-CAAATCATAATTAGATGTTTGCA
64 AAATGATTTTAAATCGAAATCTTTTT-ATTTTTGGTTAAAATC-AATCATAATTGGATGTTTGCA
* * * *
74141 TT-AGGAAATGTGAAACGGGTGCTATCCATTGATAGGAAAAG-TCTA
127 TTGA-GAAATGTGAAACGGATGCCAT-CATTTATAAGAAAAGTTC-A
* * * ** * * *
74186 TTTATAGTTAGTCATGCCTTCGAAAGCGTTGTTATTC-GCTTTAAATG-GTTTTATAATCTTATA
1 TTTATAGTCACTCATGCCTTCGAAAACCCTGTTACTCATCTATAAA-GAGTTTTATAATCTTATA
* * * * *
74249 AATGATTTTAAATTGAAATCTTTTTTATTCTTAGTTAAAATCTATCATAATTGGATGTTTGTATT
65 AATGATTTTAAATCGAAATC-TTTTTATTTTTGGTTAAAATCAATCATAATTGGATGTTTGCATT
* ** ** * ** * * * * *
74314 GGGAAACATGAAGTGAAAACCTTCCACTAACAA-AAAAGTCCA
129 GAGAAATGTGAAACGGATGCCAT-CATTTATAAGAAAAGTTCA
* * *** * * * * *
74356 TTTATAGTTATTCATGCCTTCG-ACTGCCTCATAACTCGT-TTTAAATG-GTTTTAGAATCTTAT
1 TTTATAGTCACTCATGCCTTCGAAAACCCT-GTTACTCATCTATAAA-GAGTTTTATAATCTTAT
* * * * ** *
74418 AAATGAGTTTAAAAT-AAAATCTTTTTCTTTTTTAGTTAAAATCAATCGCAATTGGATGTCCT-C
64 AAATGA-TTTTAAATCGAAATCTTTTT-ATTTTTGGTTAAAATCAATCATAATTGGATGT-TTGC
* * * * **
74481 ATT-AGGAAATGTGAAGCAGATGCCATCCATTGATAAGAAATGCCCA
126 ATTGA-GAAATGTGAAACGGATGCCAT-CATTTATAAGAAAAGTTCA
* * * ** * * * *
74527 GTTACAGTCACTTAAACCATT-GAAAGCCCTGTTACTCA-CTTTAAATG-GTCTTATATTCTTAT
1 TTTATAGTCACTCATGCC-TTCGAAAACCCTGTTACTCATCTATAAA-GAGTTTTATAATCTTAT
* * *
74589 AAATGATTTTAAATTGAAATCTTCTTTGTTTTTGATTAAA
64 AAATGATTTTAAATCGAAATCTT-TTTATTTTTGGTTAAA
74629 TGATTTGAAA
Statistics
Matches: 723, Mismatches: 178, Indels: 93
0.73 0.18 0.09
Matches are distributed among these distances:
164 1 0.00
165 70 0.10
166 53 0.07
167 5 0.01
168 5 0.01
169 151 0.21
170 271 0.37
171 152 0.21
172 15 0.02
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (170 bp):
TTTATAGTCACTCATGCCTTCGAAAACCCTGTTACTCATCTATAAAGAGTTTTATAATCTTATAA
ATGATTTTAAATCGAAATCTTTTTATTTTTGGTTAAAATCAATCATAATTGGATGTTTGCATTGA
GAAATGTGAAACGGATGCCATCATTTATAAGAAAAGTTCA
Found at i:74127 original size:335 final size:338
Alignment explanation
Indices: 73511--74378 Score: 824
Period size: 335 Copynumber: 2.6 Consensus size: 338
73501 CGCCCATCCT
* * * * * * ** *
73511 TTTATAGTCACTTATGCCATCGAAAGCCTTGTTACACACTTTAAATGGTTTAATAATCTTATAAA
1 TTTATAGTCAGTCATGCCTTCGAAAACCCTGTTACTCACTAGAAATGGTTTTATAATCTTATAAA
* ** * * * *
73576 TGATTTTAAATCAAAAGCATTTTTGGTTTTGGTAAAAATCAATCATAATTGAATGTTTGCATTGA
66 TGATTTTAAATCAAAATC-TTTTTATTTTTAGTTAAAATCAATCATAATTGGATGTTTGTATTGA
* * * *
73641 GAAATGTGAAACGAATGCCATCATTAATAAGAAAAGTTTATTTATAGTCACTCATGCCTTCGAAA
130 GAAACGAGAAACGAATGCCATCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAA
* * * **
73706 ATCTAATTATTAGCTTTAAATAGTTTTATGCACTTATAAATGATGTTAAACTGAAATCCTTTTGT
195 ACCTAATTATCAGCTTTAAATAGTTTTATGCACTTACAAATGATGTTAAACTGAAATCCTTTTAC
* * * * *
73771 TTTTGCTTCAAATAGATCATAATTGGACATTTGAATTAGAAAATGTGAAGCAGATGCTAT-C-TT
260 TTTTGCTTAAAACAAATCATAATTAGACATTTGAATTAGAAAATGTGAAACAGATGCTATCCATT
**
73834 -T-GGACTAGTCCA
325 ATAGGAAAAGTCCA
* * *
73846 TTTATAGTCGGTCATGCCTTTGAAAACCCTGTTACTCACTAGGAA-GAGTTTTATAATCTTATAA
1 TTTATAGTCAGTCATGCCTTCGAAAACCCTGTTACTCACTAGAAATG-GTTTTATAATCTTATAA
** *
73910 ATGATTTTAAATCAAAATCTTTTTCATTTTTTCTTGAAATCAATCATAATTGGATGTTTGTATTG
65 ATGATTTTAAATCAAAATCTTTTT-ATTTTTAGTTAAAATCAATCATAATTGGATGTTTGTATTG
* * *
73975 AGAAACGAGAAGCGGATGCCATCCATTTACAAG-AAAGTTCATTTATAGTCACTCATGCCTTC-A
129 AGAAACGAGAAACGAATGCCAT-CATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGA
** * * * * * * *
74038 AAAGCCTTGTTACTCA-TTTTAAA-AGATTTTAT-CAGTTACAAATGATTTTAGATTGAACTCTT
193 AAA-CCTAATTA-TCAGCTTTAAATAG-TTTTATGCACTTACAAATGATGTTAAACTGAAATCCT
* ** * * * *
74100 TTTCACTTTTGGTTAAAACAAATCATAATTAGATGTTTGCATTAGGAAATGTGAAACGGGTGCTA
255 TTT-ACTTTTGCTTAAAACAAATCATAATTAGACATTTGAATTAGAAAATGTGAAACAGATGCTA
*
74165 TCCATTGATAGGAAAAGTCTA
319 TCCATT-ATAGGAAAAGTCCA
* * ** * * **
74186 TTTATAGTTAGTCATGCCTTCGAAAGCGTTGTTATTCGCTTTAAATGGTTTTATAATCTTATAAA
1 TTTATAGTCAGTCATGCCTTCGAAAACCCTGTTACTCACTAGAAATGGTTTTATAATCTTATAAA
** * * *
74251 TGATTTTAAATTGAAATCTTTTTTATTCTTAGTTAAAATCTATCATAATTGGATGTTTGTATTGG
66 TGATTTTAAATCAAAATC-TTTTTATTTTTAGTTAAAATCAATCATAATTGGATGTTTGTATTGA
** ** * * * * *
74316 GAAAC-ATGAAGTGAAAACCTTCCACTAACAA-AAAAGTCCATTTATAGTTATTCATGCCTTCGA
130 GAAACGA-GAAACGAATGCCAT-CATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGA
74379 CTGCCTCATA
Statistics
Matches: 430, Mismatches: 86, Indels: 28
0.79 0.16 0.05
Matches are distributed among these distances:
334 38 0.09
335 211 0.49
336 11 0.03
337 2 0.00
339 2 0.00
340 159 0.37
341 7 0.02
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (338 bp):
TTTATAGTCAGTCATGCCTTCGAAAACCCTGTTACTCACTAGAAATGGTTTTATAATCTTATAAA
TGATTTTAAATCAAAATCTTTTTATTTTTAGTTAAAATCAATCATAATTGGATGTTTGTATTGAG
AAACGAGAAACGAATGCCATCATTAACAAGAAAAGTTCATTTATAGTCACTCATGCCTTCGAAAA
CCTAATTATCAGCTTTAAATAGTTTTATGCACTTACAAATGATGTTAAACTGAAATCCTTTTACT
TTTGCTTAAAACAAATCATAATTAGACATTTGAATTAGAAAATGTGAAACAGATGCTATCCATTA
TAGGAAAAGTCCA
Found at i:74601 original size:341 final size:339
Alignment explanation
Indices: 73865--74611 Score: 773
Period size: 340 Copynumber: 2.2 Consensus size: 339
73855 GGTCATGCCT
* *** **
73865 TTGAAAACCCTGTTACTCACTAGGAA-GAGTTTTATAATCTTATAAATGATTTTAAATCAAAATC
1 TTGAAAGCCCTGTTACTCACTTTAAATG-GTTTTATAATCTTATAAATGATTTTAAATTGAAATC
* * * * **
73929 TTTTTCATTTTTTCTTGAAATCAATCATAATTGGATGTTTGTATTGAGAAACGAGAAGCGGATGC
65 TTTTTCATTCTTACTTAAAATCAATCATAATTGGATGTTTGTATTGAGAAACGAGAAGCGAAAAC
* * * * ** *
73994 CATCCATTTACAAGAAAGTTCATTTATAGTCACTCATGCCTTCAAAAGCCTTGTTACTCATTTTA
130 CATCCACTAACAAAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTCATAACTCATTTTA
** * * * * * * *
74059 AAAGATTTTATCAGTTACAAATGATTTTAGATTGAACTCTTTTTCACTTTTGGTTAAAACAAATC
195 AAAGATTTTAGAACTTACAAATGAGTTTAAAATAAAATCTTTTTCACTTTTAGTTAAAACAAATC
* * * * * * * * *
74124 ATAATTAGATGTTTGCATTAGGAAATGTGAAACGGGTGCTATCCATTGATAGGAAAAGTCTATTT
260 ACAATTAGATGTCTGCATTAGGAAATGTGAAACAGATGCCATCCATTGATAAGAAAAGCCCAGTT
* * * **
74189 ATAGTTAGTCATGCC
325 ACAGTCACTCAAACC
** * *
74204 TTCGAAAGCGTTGTTATTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAAATC
1 TT-GAAAGCCCTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAAATC
* * * * *
74269 TTTTTTATTCTTAGTTAAAATCTATCATAATTGGATGTTTGTATTGGGAAAC-ATGAAGTGAAAA
65 TTTTTCATTCTTACTTAAAATCAATCATAATTGGATGTTTGTATTGAGAAACGA-GAAGCGAAAA
* * * * ** *
74333 CCTTCCACTAACAAAAAAGTCCATTTATAGTTATTCATGCCTTCGACTGCCTCATAACTCGTTTT
129 CCATCCACTAACAAAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTCATAACTCATTTT
* * * **
74398 AAATGGTTTTAGAATCTTATAAATGAGTTTAAAATAAAATCTTTTTCTTTTTTAGTTAAAATC-A
194 AAAAGATTTTAGAA-CTTACAAATGAGTTTAAAATAAAATCTTTTTCACTTTTAGTTAAAA-CAA
* * * *
74462 ATCGCAATTGGATGTCCT-CATTAGGAAATGTGAAGCAGATGCCATCCATTGATAAGAAATGCCC
257 ATCACAATTAGATGT-CTGCATTAGGAAATGTGAAACAGATGCCATCCATTGATAAGAAAAGCCC
*
74526 AGTTACAGTCACTTAAACC
321 AGTTACAGTCACTCAAACC
* *
74545 ATTGAAAGCCCTGTTACTCACTTTAAATGGTCTTATATTCTTATAAATGATTTTAAATTGAAATC
1 -TTGAAAGCCCTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAAATC
74610 TT
65 TT
74612 CTTTGTTTTT
Statistics
Matches: 327, Mismatches: 74, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
339 3 0.01
340 162 0.50
341 158 0.48
342 4 0.01
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (339 bp):
TTGAAAGCCCTGTTACTCACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTGAAATCT
TTTTCATTCTTACTTAAAATCAATCATAATTGGATGTTTGTATTGAGAAACGAGAAGCGAAAACC
ATCCACTAACAAAAAAGTCCATTTATAGTCACTCATGCCTTCAAAAGCCTCATAACTCATTTTAA
AAGATTTTAGAACTTACAAATGAGTTTAAAATAAAATCTTTTTCACTTTTAGTTAAAACAAATCA
CAATTAGATGTCTGCATTAGGAAATGTGAAACAGATGCCATCCATTGATAAGAAAAGCCCAGTTA
CAGTCACTCAAACC
Found at i:74640 original size:37 final size:37
Alignment explanation
Indices: 74588--74659 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
74578 TATATTCTTA
*
74588 TAAATGATTTTAAATTGAAATCTTCTT-TGTTTTTGAT
1 TAAATGATTTGAAATTGAAATCTT-TTGTGTTTTTGAT
*
74625 TAAATGATTTGAAATTGAAGTCTTTTGTGTTTTTG
1 TAAATGATTTGAAATTGAAATCTTTTGTGTTTTTG
74660 GTTCAAACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 2 0.06
37 30 0.94
ACGTcount: A:0.28, C:0.04, G:0.15, T:0.53
Consensus pattern (37 bp):
TAAATGATTTGAAATTGAAATCTTTTGTGTTTTTGAT
Found at i:75102 original size:170 final size:168
Alignment explanation
Indices: 74708--76330 Score: 533
Period size: 170 Copynumber: 9.6 Consensus size: 168
74698 TGTGAAGCGG
* * * * * * *
74708 AAGCTATCCATTGATAATAAAAGTTTATTTATTGTAACTCATGCCTTTGAAAGCCTAGTTAGTCG
1 AAGCCATCCATTGATAA-AAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCA
* *
74773 CTTTAAATAGTTTTATAATCTTATAAATGGTTTTAAATTGAATTCTTTTTATTTTGGTTAAAACA
65 CTTTAAATAGTTTTATAATCTTATAAATGATTTTAAATTGAATTCTTTTTATTTTGCTTAAAACA
* * * **
74838 GATCATAATTGGATGTTTAAATTAGGAAACGTCAAGTGA
130 GATCATAATTGGATATTTAAATTAGGAAACATAAAGCAA
* * * * * * * * *
74877 AAGCCATCAATTGACAAAAGAAGTCCATTTATAGTCACTTAAGCGTACAAAAGCCTTGTTACTCA
1 AAGCCATCCATTGATAAAA-AAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCA
** * *
74942 CTTTATGTGGTTTTATAATCTTAT-TATGATTTTAAATTGAAATT-TTTTTCAGTTTTGCTTAAA
65 CTTTAAATAGTTTTATAATCTTATAAATGATTTTAAATTG-AATTCTTTTT-A-TTTTGCTTAAA
* * * ** *
75005 AGATATCATAATTTGATATTT-GCTTTGGAAAACATAAAGCAA
127 ACAGATCATAATTGGATATTTAAATTAGG-AAACATAAAGCAA
* * * * *
75047 AAGCCATCCATTGATAAGAAAAATCTATTCATAGTCACTCATGCCTTCGAAAGCCTACTTACCCG
1 AAGCCATCCATTGATAA-AAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCA
* * * * * ** *
75112 TTTTCAATTGTTTTATAATCTTATAAATAATTTTAAA-TCAA---TTTTT-TTTTAATTAAAATA
65 CTTTAAATAGTTTTATAATCTTATAAATGATTTTAAATTGAATTCTTTTTATTTTGCTTAAAACA
* * * * * * ** *
75172 GACCATAATTGGATGTTTGAATCAAGACATGTGAAGCAA
130 GATCATAATTGGATATTTAAATTAGGAAACATAAAGCAA
* * * * * * * * * * ** * * *
75211 CAGTCATCCATTGACATGAAAATTTTATTTATACTCAATCATGGCTTTGAAAGTATTGTTGCTCG
1 AAGCCATCCATTGATA-AAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCA
* * * * ** **
75276 CTTTAAA-AGTTTTTATAATTTTATAAAAGAATCTAAATCAAAAATT-TTTTTGCTTT-CAGTTA
65 CTTTAAATAG-TTTTATAATCTTATAAATGATTTTAAAT--TGAATTCTTTTTATTTTGC--TTA
* * * * * * * * *
75338 AAATTA-ACCATAATTGGACATTT-GATTGGGAAGCGTGAAGCAG
125 AAA-CAGATCATAATTGGATATTTAAATTAGGAAACATAAAGCAA
* * ** * * *
75381 ATGCAATTAATTGATGAGAAAAGTCCATTTATAGTCACTCATG-CTATC-AAAGCCTTGTTACTC
1 AAGCCATCCATTGAT-AAAAAAGTCTATTTATAGTCACTCATGCCT-TCGAAAGCCTAGTTACTC
* * *
75444 ACTTTAAAT-GATTTTATAATCTTATAATTGATTTTATAA-TGAAATAT-TTTTTGATTTTGGTC
64 ACTTTAAATAG-TTTTATAATCTTATAAATGATTTTA-AATTG-AAT-TCTTTTT-ATTTTGCTT
* * * ** *
75506 AAAATC-GATCATATTTGGCTGTTTCCATT-GGAAAACATAAAGTAA
124 AAAA-CAGATCATAATTGGATATTTAAATTAGG-AAACATAAAGCAA
* ** * ** * ** * *
75551 ATGTTATCCATTGACAAGAAACTTCTATTTATAGTCACTTATGTGTACGAAAGCCTTGTTACAT-
1 AAGCCATCCATTGATAA-AAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTAC-TC
* * * * * * * **
75615 GCTTTAAGTCA-TTTTATAAACTCATAAATGATTTTGAGTTGAATTTTGTTTTTCATTTTTTATT
64 ACTTTAAAT-AGTTTTATAATCTTATAAATGATTTTAAATTGAA--TTCTTTTT-A-TTTTGCTT
** ** * * *
75679 AAAACCTATCATAATTGGATATTTCCATCAGAAAACATGAA-CAGA
124 AAAACAGATCATAATTGGATATTTAAATTAGGAAACATAAAGCA-A
* * * ** * * *
75724 AAGTCATTCATTAATAAGAAAAGTCTATTTATAGTCACTCATGCCGACGAAAGCTTGGTTACTCG
1 AAGCCATCCATTGATAA-AAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCA
* * * * *
75789 C-TCAAACTAGTTTTGTAATC-TATAAATGATTTTAAA-TCAATTTCTTTTACATTTAG-TTAAA
65 CTTTAAA-TAGTTTTATAATCTTATAAATGATTTTAAATTGAA-TTCTTTT-TATTTTGCTTAAA
* * * * * * * * *
75850 ACAAATTATAATTCGCTATTTGAATTGGGAAACGTGAAGAAA
127 ACAGATCATAATTGGATATTTAAATTAGGAAACATAAAGCAA
* * * * * *
75892 AAGCCATCTATTGACAAGAAAA-TTTCATTTATAG----TCATGCCTTTGAAAGCCTTGTTACTT
1 AAGCCATCCATTGATAA-AAAAGTCT-ATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTC
* * * * * * * * *
75952 GCTTCAAAT-GATTTTATAATCATATAAATCATTTGATACTAAATT-TTCTCTGTTTTTTG-TTA
64 ACTTTAAATAG-TTTTATAATCTTATAAATGATTTTAAATTGAATTCTT-T-T-TATTTTGCTTA
* ** * * * *
76014 AAATCA-ATCATAATTGGATGTTTGCATCAGCAAACATGAAGCGA
125 AAA-CAGATCATAATTGGATATTTAAATTAGGAAACATAAAGCAA
* * * ** * *** * *
76058 ATGCCATCCATTG-TGAAGAAAGCTCCATTTATAGTCGGTCATGCCATCGAAAATATTGTTTCTC
1 AAGCCATCCATTGAT-AAAAAAG-TCTATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTC
* * * * * * *
76122 TCTTTAAA-CGATTTTATAAT-TTGTAAATGAATTTAAATTAAAATCTTTTTTGTTTTTGGC-TA
64 ACTTTAAATAG-TTTTATAATCTTATAAATGATTTTAAATTGAATTC-TTTTT-ATTTT-GCTTA
* * * * ** * * **
76184 AAATAGATAATAATTGAATACTT-GCTTTGGAAA-ATGTGAAGTGA
125 AAACAGATCATAATTGGATATTTAAATTAGGAAACA--TAAAGCAA
* * * * * * ** ** **
76228 CAGCCATCCATTCACAAGAAAGTCCATTTATAGTCAATCATGAGTTCGAAAGCCTTA-TTTTTTG
1 AAGCCATCCATTGATAAAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCC-TAGTTACTCA
* * *
76292 CTTTAAACAGTTTTATAAACTTATAAATGATTTAAAATT
65 CTTTAAATAGTTTTATAATCTTATAAATGATTTTAAATT
76331 AAACTCTTCT
Statistics
Matches: 1071, Mismatches: 306, Indels: 153
0.70 0.20 0.10
Matches are distributed among these distances:
163 2 0.00
164 142 0.13
165 26 0.02
166 62 0.06
167 12 0.01
168 83 0.08
169 227 0.21
170 306 0.29
171 84 0.08
172 30 0.03
173 96 0.09
174 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (168 bp):
AAGCCATCCATTGATAAAAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTAGTTACTCAC
TTTAAATAGTTTTATAATCTTATAAATGATTTTAAATTGAATTCTTTTTATTTTGCTTAAAACAG
ATCATAATTGGATATTTAAATTAGGAAACATAAAGCAA
Found at i:77693 original size:171 final size:171
Alignment explanation
Indices: 77363--81482 Score: 2318
Period size: 171 Copynumber: 24.3 Consensus size: 171
77353 TACTAACACT
* * * *
77363 ATTGACAAGAAAAGTCCATTTATA-TATACTCAT-TCTATTAAAAGCCTTGTTACTCACTTTATA
1 ATTGACAAGAAAAGTCCATTTATAGT-CACTCATGCCT-TTGAAAGCCTTGTTACTCACTTTAAA
* * *
77426 TGGTTTTATAATGC-TATAAATCATTTTAAATT-GAAAT-TGTTTTCATTTTTGGTTCAAATCA-
64 TGGTTTTATAAT-CTTATAAATGATTTT-AATTCAAAATAT-TTTTCATTTTTGGTT-AAAACAG
* * * * * * * ** *
77487 ATCACAATTGGATGCTCGTAATGGGAAATGTGAAATGAATGCCATCC
125 ATCATAATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCCATCC
* * * * *
77534 ATTAAAAAGAAAAGTCCGTTTATAGTCACTTATGCCTTTGAAAGCCTTGTTACTCACTTTAAGTG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
* * * * * *
77599 GTTTAATAGTCTTATAAATGATTTTGATTCAAAATATTTTTCATTTCTAGTTAAAACAGGTCATA
66 GTTTTATAATCTTATAAATGATTTTAATTCAAAATATTTTTCATTTTTGGTTAAAACAGATCATA
* * * * *
77664 ATTGAATGTTTGCATTAGAAAACGTGAAATGGGA-GGCATCC
131 ATTGGATGTTTGCATTAGAAAACATGAAGT-GAATGCCATCC
* * * * * * * * **
77705 ATTGAGAAGAAATGTCCATTTATAGTAAGTTAAGCCATTGAAAGCCTTGTTA-TTAGCTTTAGCT
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCA-CTTTAAAT
* * * * * *
77769 GGTTTGATAATATTATAAATTATTTTAAATT-GAAATCCCTTTTTC-TTTTTAGTTAAAATCA-A
65 GGTTTTATAATCTTATAAATGATTTT-AATTCAAAAT--ATTTTTCATTTTTGGTTAAAA-CAGA
** * * * * **
77831 TTGTAATTGGATGTTTGCATCA-AGAAATATGAGGTGGATGGAATCC
126 TCATAATTGGATGTTTGCATTAGA-AAACATGAAGTGAATGCCATCC
* * * ** * * * * *
77877 ATTGAGAAGAAAAGTCTATTTATAGTCACTTATGCCAGTAAAAGCCTTGTCAGTCCCTTTAAATA
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
* * * * * **
77942 TTTTTATAATCTTCTTAATGATTTTGAA-TCAAAATATTTTTTATTTTTAGTTAAAATTGATCAT
66 GTTTTATAATCTTATAAATGATTTT-AATTCAAAATATTTTTCATTTTTGGTTAAAACAGATCAT
* *
78006 AATTGGATGTTTGCATCA-AGAAACATGAAGCGAATGCCATCC
130 AATTGGATGTTTGCATTAGA-AAACATGAAGTGAATGCCATCC
* * * * * * *
78048 ATAGATCAA-AAAAGTCCATTTAAAGTTACTTATGCC-ATCAATAGCCTTGTTACTCGCTTTAAA
1 ATTGA-CAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAA-AGCCTTGTTACTCACTTTAAA
** * * * ** **
78111 TTATTTTATAATTTTATAAATGATTTTAAGTCAAAATCTTTTTTGTTTTTTCTTAAAATC-GATC
64 TGGTTTTATAATCTTATAAATGATTTTAATTCAAAATATTTTTCATTTTTGGTTAAAA-CAGATC
** * **
78175 ATAATTGGATGTTCACATTAGAAAACATGAAGCGAATGTTATCC
128 ATAATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCCATCC
* * * *
78219 ATTGACAATAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCTTGTTACTCCCTTTAAGTG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
* * * * ** * * * *
78284 GTTTAATAATATTATAAATTATTTCAAGTT-AATTTTTTTTTCAATTTTAGTTAAAACAAATCAT
66 GTTTTATAATCTTATAAATGATTTTAA-TTCAAAATATTTTTCATTTTTGGTTAAAACAGATCAT
* * *
78348 AATTGGATGCTTGTATTGGAAAACAT-AA---AA---CAT--
130 AATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCCATCC
* * * * * *
78381 A--AACAAGAAAATTCC-TTTATATTCACTCATGCCTTTGAAAGGCTT-ATATCTCTCTTTAAAT
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTA-CTCACTTTAAAT
* ** **
78442 GGTTTTATAATCTTATAAATGATTTTTAA-TCAAAATATTTTTTATTTTTGGTTAAAATTGATTT
65 GGTTTTATAATCTTATAAATGA-TTTTAATTCAAAATATTTTTCATTTTTGGTTAAAACAGATCA
* * * * *
78506 TAATTGGATGTTTGCATCA-ATAAATATGAAG-CATATGTCATCT
129 TAATTGGATGTTTGCATTAGA-AAACATGAAGTGA-ATGCCATCC
* * * * * * * *
78549 ATTGAGAGGAAAGGTCCATTTATAGTCACTCATGCCATCGAAAGTCTTGTTAGTCGCTTTAAATG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
* * * *
78614 GTTTTATAATCTTATAAAT-AGTTTTAAAT-AGAAATCTTTTTCATTGTTGGTTAAAA-TGAATC
66 GTTTTATAATCTTATAAATGA-TTTTAATTCA-AAATATTTTTCATTTTTGGTTAAAACAG-ATC
** * * *
78676 ATTGTTGGATGTTTTCATTAGAAAACATGAAGCGAATGCCATCA
128 ATAATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCCATCC
* * * * * ** *
78720 ATTGAGAAGAAAAGTTCATTTATTGTCACTTATG-CTTTCAAAGCCTTGTTACTTGCTTTAATTG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
** * * * ** * * *
78784 GTTGAATATTCTTAT-AATAATTTTAAGTCAATTTTTTTTTTATTTTTGGTTAAAACATAT-ATT
66 GTTTTATAATCTTATAAATGATTTTAATTCAAAATATTTTTCATTTTTGGTTAAAACAGATCA-T
* * * * * **
78847 AATTGGATGTTTGTATTGGGAAACATGAAATGAAAGCCATTT
130 AATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCCATCC
* * * * * ** * *
78889 ATTAATAAGAAAAGTACA-TTATTGTCACTCATGCCATCAAAAGCTTTGTTACTCACTTTAAGTG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
* * * * * * * *** *
78953 ATTTTGTAACCTCAAAAATGATTTTCAAATGACTTTTTTTTTCATTTTTTGGTTAAAACAGATCA
66 GTTTTATAATCTTATAAATGATTTT-AATTCAAAATATTTTTCA-TTTTTGGTTAAAACAGATCA
* * * ** *
79018 TAATTAGATGATTGTATTA-AGAAATGTGAAGTGAAAGCCATCC
129 TAATTGGATGTTTGCATTAGA-AAACATGAAGTGAATGCCATCC
* * * * *
79061 ATTGGA-AAGAAAAGTCGATTGATAGTCACTCATGCTTTTAAAAGACC-TGTTACTCACTTTAAG
1 ATT-GACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAG-CCTTGTTACTCACTTTAAA
* * * *
79124 TGGTTTTATAACCTTAAAAATGA-TTT--TTCAAAAGACTTTTTTCATTTTTGGTTAAAACATAT
64 TGGTTTTATAATCTTATAAATGATTTTAATTCAAAATA--TTTTTCATTTTTGGTTAAAACAGAT
* ** *
79186 CATAATTGGATGTTTGCA-TCGAGAAACATGAAGCAAAAGCCATCC
127 CATAATTGGATGTTTGCATTAGA-AAACATGAAGTGAATGCCATCC
* * * * ** * * ** * *
79231 ATTAACAAGAAAGGTCCATTGATAATCACTCATATCTTCGAAAGTCTACTTACTCGCTTTAAATA
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
* * * * * *
79296 GTTTTATACTCTTATAAAAAGATTTTAAATT-AAATTATTTTTTATTTTTGGTTATAACAGATGA
66 GTTTTATAATCTTAT-AAATGATTTT-AATTCAAAATATTTTTCATTTTTGGTTAAAACAGATCA
* * * * *
79360 TAATTGGATGTTTGAATCA-AGAAACATGATGTGAAAGCTATCC
129 TAATTGGATGTTTGCATTAGA-AAACATGAAGTGAATGCCATCC
* * * * * * *
79403 ATTGACAATAAAATTTCATTTATAGTTAGTCATGGCTTTGAAAGCCTTGTTACTCGCTTTAAATG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
* * * * ** * **
79468 GTTTTGTAATCTTATAAAAGATATTAATTTAAAATATTTTT--TTTTTCATTAAAATTA-ATTGT
66 GTTTTATAATCTTATAAATGATTTTAATTCAAAATATTTTTCATTTTTGGTTAAAA-CAGATCAT
* * * *
79530 AATTGGATGTTTG-ATTAGGAAACATGGAGT-AGACGCCGTCC
130 AATTGGATGTTTGCATTAGAAAACATGAAGTGA-ATGCCATCC
* * * *
79571 ATTGAAAAGAAAAGTCCATTTAGAGTCACTCATG-CTATCAAAGCCTTGTTACT-AGCTTTAAAT
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCA-CTTTAAAT
* * * * * **
79634 GGTTTGATAATCTTATAAATGATTTTACA-CCAAAATCTTTCTT-GTTTTTGGTCAAAATTGATC
65 GGTTTTATAATCTTATAAATGATTTTA-ATTCAAAATATTT-TTCATTTTTGGTTAAAACAGATC
* * * * ** ** *
79697 ATAATTAGATGCTTGCATTGGGAAATGTGAAGTGAATGCTGTTC
128 ATAATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCCATCC
* * * ** * * *
79741 ATTGACAAAAAAAGTCTATGTATAGTCACTCATGCCCATAAAAGCCATGTTACTCACTTTAAGTG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
* * * * *
79806 GTTATATAATCTTATAAATGATTTTGAATT--GAATGTTTTTGCATTTTTAGTTAAAACATATCA
66 GTTTTATAATCTTATAAATGATTTT-AATTCAAAATATTTTT-CATTTTTGGTTAAAACAGATCA
* * * * ** * *
79869 TAATTGGTTATTTGC-TTCGAGAAACAAGAAGCAAAAGCCTTCC
129 TAATTGGATGTTTGCATTAGA-AAACATGAAGTGAATGCCATCC
* * * * **
79912 ATTGACAAGAAAAGTCCTTTTTATAGTCACTCATGCCTTCGAAAGCGTAGTTACTTGCTTTAAAT
1 ATTGACAAGAAAAGTCC-ATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAAT
* * * * * * * * * * * *
79977 AGTTTTGTAATCTCATAAATGAGTGTAAAT-AGAATTTTTTTAATGTTTGGTTAAAATAGATTAT
65 GGTTTTATAATCTTATAAATGATTTTAATTCAAAATATTTTTCATTTTTGGTTAAAACAGATCAT
* * * * * * *
80041 TATTGGATGTTTGAATTGGGAAACTTGAAGCGAAAGCCATCC
130 AATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCCATCC
* * * * * * **
80083 ATTGATAAG-AAATTCCATATATAGACAGTCATGCCTTTGAAAAACCTTGTTACTTTCTTTAAAT
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTG-AAAGCCTTGTTACTCACTTTAAAT
* * * * *
80147 AGTTTTATAATCTTATGAATGATTTGAAATT-AAAATCTTCTTTTATTTTT-GTTAAAATCA-AT
65 GGTTTTATAATCTTATAAATGATTT-TAATTCAAAATATT-TTTCATTTTTGGTTAAAA-CAGAT
* ** * * *
80209 CATAATTGGATGTTTACATTA-AGAAACATGAAACGGATGCTATCA
127 CATAATTGGATGTTTGCATTAGA-AAACATGAAGTGAATGCCATCC
* * * * ** ***
80254 ATTGACAAG-ACAGCTCTATATATAGTCACTCAT-TCTGTCAAAAGCCTTGTTACTTGTTTTAAA
1 ATTGACAAGAAAAG-TCCATTTATAGTCACTCATGCCT-TTGAAAGCCTTGTTACTCACTTTAAA
** * * *
80317 TAATTTTATAAT-TTATAAGT-ATTTTAAATT--AAA-A----TC-TTGTTTAGTTAAAATAGAT
64 TGGTTTTATAATCTTATAAATGATTTT-AATTCAAAATATTTTTCATT-TTTGGTTAAAACAGAT
** * * * ** * * *
80372 CATAATTGGATACTTGCTTTGGGAAAGGTTAAGCGGCA-GCCATCC
127 CATAATTGGATGTTTGCATTAGAAAACATGAAG-TGAATGCCATCC
* ** * * * ** *
80417 ATCGAC-AGAAAAAGTTTATTCATAGTCAGTCATG-CTTTCAAAAGCCTAATTACTCACTTTTAA
1 ATTGACAAG-AAAAGTCCATTTATAGTCACTCATGCCTTT-GAAAGCCTTGTTACTCACTTTAAA
* * ** * * * * * ** *
80480 TGATTTTATAAACAAATAAATGATTTTAAATGAAATTCTTCTTCATTTTAAGTTAAAAGTA-ATC
64 TGGTTTTATAATCTTATAAATGATTTTAATTCAAAATATTTTTCATTTTTGGTTAAAA-CAGATC
* * * * ** * *
80544 GTAATTGGATGTTTGCATTGGGAAATATGAAACGAAAGTCATCC
128 ATAATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCCATCC
* * * * * * *
80588 ATTAACAAGAAAAGTCAATTTATTGTCA-TCCATGCCCTTGAACGGCTTGTTACTCTCTTTAAAT
1 ATTGACAAGAAAAGTCCATTTATAGTCACT-CATGCCTTTGAAAGCCTTGTTACTCACTTTAAAT
**
80652 GGTTTTATAATCTTATAAATGATTTTCAA-TCAAAATATTTTTTGTTTTTGG-T--------TC-
65 GGTTTTATAATCTTATAAATGATTTT-AATTCAAAATATTTTTCATTTTTGGTTAAAACAGATCA
* * * * * * *
80706 -AA----ATGTTTGCATGAGGAAACGTGTA-TCAAATGTCAACC
129 TAATTGGATGTTTGCATTAGAAAACATGAAGT-GAATGCCATCC
*** * * * **
80744 ATTCTGAAGAAAAGTCCACTTATGGTCACTCATGCCCTCAAAAGCCTTGTTACTCACTTTAAATG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
* * * * * * *
80809 GTTTAATAGTCTCATTAAATTATTTTAAGT-AGAAATCTTTTTCACTTTTGG-TAAAATCA-ATC
66 GTTTTATAATCTTA-TAAATGATTTTAATTCA-AAATATTTTTCATTTTTGGTTAAAA-CAGATC
*
80871 ATAATTGGATGTTTGCATT-GAGAAACATGAAGCGAATGCCATCC
128 ATAATTGGATGTTTGCATTAGA-AAACATGAAGTGAATGCCATCC
* * * * * * * *
80915 ATTGAGAAGAAAGGTTCATTTATTGTTACTTATGCCTTCGAAAGCCTTGTTACTCACTTTAAGTG
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
* * * * * ** * *
80980 GTTTAATATTCTTACAAATGATCTTAAATCAATTTTTTTTTTATTTTTGGTTAAAACAGATCATA
66 GTTTTATAATCTTATAAATGATTTTAATTCAAAATATTTTTCATTTTTGGTTAAAACAGATCATA
* * * * * *
81045 ATTGGATGTTCGCATT-GGAAACTACGAAGCAGAA-GGCAACC
131 ATTGGATGTTTGCATTAGAAAAC-ATGAAG-TGAATGCCATCC
* * * * * * * *
81086 ATTGAGAAAAAAAATCCATTTATAGTCACTCATGCC-ATCAACAGCCCTGTTATTCGCTTTAAAT
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAA-AGCCTTGTTACTCACTTTAAAT
* * * ** *
81150 GATTTCATAATCGTGCAAATGATTTTGAA-TCAAAATCATTTTT-ATTTTTAGTTAAAATCA-AT
65 GGTTTTATAATCTTATAAATGATTTT-AATTCAAAAT-ATTTTTCATTTTTGGTTAAAA-CAGAT
* * * * **
81212 TATAATTGGGTGTTTGTATT-GAGAAACATGAAG-CAAAACCATCC
127 CATAATTGGATGTTTGCATTAGA-AAACATGAAGTGAATGCCATCC
* * * *
81256 ATTGACAAGAAAATGTCCATTTGTAGTCACTTATGCCTTTGAAAGCCTTGTTAGTCACTTTCAA-
1 ATTGACAAGAAAA-GTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAAT
* * * * *
81320 GGATTTTATAATGTTATAAATGATTTTAAATAAAAATCTTTTTCAATTTTGGTTAAAATCA-ATC
65 GG-TTTTATAATCTTATAAATGATTTTAATTCAAAATATTTTTCATTTTTGGTTAAAA-CAGATC
* ** ** *
81384 ATAATTGGATGTTTGCATT-GTGAAATGTGAAGCAAATGCCATCT
128 ATAATTGGATGTTTGCATTAG-AAAACATGAAGTGAATGCCATCC
* * * * * * *
81428 ATTGACAACAAAAGTCAATTTATAGTCACTTATGTCTTCGAAAGACTTATTACTC
1 ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTC
81483 GCTAAATTGA
Statistics
Matches: 3052, Mismatches: 731, Indels: 332
0.74 0.18 0.08
Matches are distributed among these distances:
156 92 0.03
157 28 0.01
158 4 0.00
159 99 0.03
160 20 0.01
161 2 0.00
162 12 0.00
163 87 0.03
164 15 0.00
165 7 0.00
166 5 0.00
167 61 0.02
168 68 0.02
169 194 0.06
170 376 0.12
171 1437 0.47
172 471 0.15
173 67 0.02
174 5 0.00
175 2 0.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.38
Consensus pattern (171 bp):
ATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCACTTTAAATG
GTTTTATAATCTTATAAATGATTTTAATTCAAAATATTTTTCATTTTTGGTTAAAACAGATCATA
ATTGGATGTTTGCATTAGAAAACATGAAGTGAATGCCATCC
Found at i:78130 original size:343 final size:342
Alignment explanation
Indices: 77530--78780 Score: 764
Period size: 330 Copynumber: 3.7 Consensus size: 342
77520 AATGAATGCC
* * ** * *
77530 ATCCATTAAAAAGAAAAGTCCGTTTATAGTCACTTATGCCTTTGAAAGCCTTGTTACTCACTTTA
1 ATCCATTGAAAAGAAAAGTCCATTTATAGTCACTTATGCCAGTAAAAGCCTTGTCACTCACTTTA
* * * * *
77595 AGTGGTTTAATAGTCTTATAAATGATTTTGATTCAAAATATTTTTCATTTCTAGTTAAAACAGGT
66 AATAGTTTAATAATCTTATAAATGATTTTGAATCAAAATATTTTTCATTTCTAGTTAAAACAGAT
* * * * * * *
77660 CATAATTGAATGTTTGCATTAGAAAACGTGAAATGGGAGGCATCCATTGAGAAGAAATGTCCATT
131 CATAATTGAATGTTTGCATAAGAAAACATGAAATGGAAGCCATCCATAGACAAGAAAAGTCCATT
* * * * ** * *
77725 TATAGTAAGTTAAGCCATTGAAAGCCTTGTTATTAGCTTTAGCTGGTTTGATAATATTATAAATT
196 TAAAGTAACTTAAGCCATTCAAAGCCTTGTTACTAGCTTTAAATGATTTGATAATATTATAAATG
** * ** **
77790 ATTTTAAATTGAAATCCCTTTTTCTTTTTAGTTAAAATCAATTGTAATTGGATGTTTGCATCAAG
261 ATTTTAAATCAAAAT-CCTTTTTCTTTTTACTTAAAATCAATCATAATTGGATGTTCACAT-AAG
* * * *
77855 -AAATATGAGGTGGATGGA
324 AAAACATGAAGCGAATGGA
* * * *
77873 ATCCATTGAGAAGAAAAGTCTATTTATAGTCACTTATGCCAGTAAAAGCCTTGTCAGTCCCTTTA
1 ATCCATTGAAAAGAAAAGTCCATTTATAGTCACTTATGCCAGTAAAAGCCTTGTCACTCACTTTA
* * * * * * **
77938 AATATTTTTATAATCTTCTTAATGATTTTGAATCAAAATATTTTTTATTTTTAGTTAAAATTGAT
66 AATAGTTTAATAATCTTATAAATGATTTTGAATCAAAATATTTTTCATTTCTAGTTAAAACAGAT
*
78003 CATAATTGGATGTTTGCATCAAG-AAACATG-AA-GCGAATGCCATCCATAGATCAA-AAAAGTC
131 CATAATTGAATGTTTGCAT-AAGAAAACATGAAATG-GAA-GCCATCCATAGA-CAAGAAAAGTC
* * * * * *
78064 CATTTAAAGTTACTTATGCCA-TCAATAGCCTTGTTACTCGCTTTAAATTATTTTATAATTTTAT
192 CATTTAAAGTAACTTAAGCCATTCAA-AGCCTTGTTACTAGCTTTAAATGATTTGATAATATTAT
* * * * *
78128 AAATGATTTTAAGTCAAAATCTTTTTTGTTTTTTCTTAAAATCGATCATAATTGGATGTTCACAT
256 AAATGATTTTAAATCAAAATCCTTTTTCTTTTTACTTAAAATCAATCATAATTGGATGTTCACAT
* **
78193 TAGAAAACATGAAGCGAATGTT
321 AAGAAAACATGAAGCGAATGGA
* * * ** * * * *
78215 ATCCATTGACAATAAAAGTCCATTTATAGTCACTCATGCCTTTGAAAGTCTTGTTACTCCCTTTA
1 ATCCATTGAAAAGAAAAGTCCATTTATAGTCACTTATGCCAGTAAAAGCCTTGTCACTCACTTTA
* * * * * * ** * *
78280 AGTGGTTTAATAATATTATAAATTA-TTTCAAGTTAATTTTTTTTTCAATTT-TAGTTAAAACAA
66 AATAGTTTAATAATCTTATAAATGATTTTGAA-TCAAAATATTTTTC-ATTTCTAGTTAAAACAG
* * * ** *
78343 ATCATAATTGGATGCTTGTATTGGAAAACAT--AA---AA--CAT--A-A-ACAAGAAAATTCC-
129 ATCATAATTGAATGTTTGCATAAGAAAACATGAAATGGAAGCCATCCATAGACAAGAAAAGTCCA
* * * * * * * * * ** * * *
78396 TTTATATTCACTCATGCCTTTGAAAGGCTT-ATATCTCTCTTTAAATGGTTTTATAATCTTATAA
194 TTTAAAGTAACTTAAGCCATTCAAAGCCTTGTTA-CTAGCTTTAAATGATTTGATAATATTATAA
* ** * ** ** ** **
78460 ATGATTTTTAATCAAAATATTTTTTATTTTTGGTTAAAATTGATTTTAATTGGATGTTTGCATCA
258 ATGATTTTAAATCAAAATCCTTTTTCTTTTTACTTAAAATCAATCATAATTGGATGTTCACAT-A
* * **
78525 A-TAAATATGAAGC-ATATGTC
322 AGAAAACATGAAGCGA-ATGGA
* * * * * * * * * *
78545 ATCTATTGAGAGGAAAGGTCCATTTATAGTCACTCATGCCA-TCGAAAGTCTTGTTAGTCGCTTT
1 ATCCATTGAAAAGAAAAGTCCATTTATAGTCACTTATGCCAGT-AAAAGCCTTGTCACTCACTTT
* * * * *
78609 AAATGGTTTTATAATCTTATAAAT-AGTTTTAAAT-AGAAATCTTTTTCATTGT-TGGTTAAAA-
65 AAATAGTTTAATAATCTTATAAATGA-TTTTGAATCA-AAATATTTTTCATT-TCTAGTTAAAAC
* ** * * * * * *
78670 TGAATCATTGTTGGATGTTTTCATTAGAAAACATG-AA-GCGAATGCCATCAATTGAGAAGAAAA
127 AG-ATCATAATTGAATGTTTGCATAAGAAAACATGAAATG-GAA-GCCATCCATAGACAAGAAAA
* ** * * * *
78733 GTTCATTTATTGTCACTTATG-CTTTCAAAGCCTTGTTACTTGCTTTAA
189 GTCCATTTAAAGTAACTTAAGCCATTCAAAGCCTTGTTACTAGCTTTAA
78781 TTGGTTGAAT
Statistics
Matches: 716, Mismatches: 159, Indels: 68
0.76 0.17 0.07
Matches are distributed among these distances:
329 9 0.01
330 232 0.32
331 19 0.03
332 1 0.00
333 1 0.00
334 2 0.00
335 3 0.00
337 3 0.00
338 2 0.00
339 1 0.00
341 40 0.06
342 185 0.26
343 214 0.30
344 4 0.01
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (342 bp):
ATCCATTGAAAAGAAAAGTCCATTTATAGTCACTTATGCCAGTAAAAGCCTTGTCACTCACTTTA
AATAGTTTAATAATCTTATAAATGATTTTGAATCAAAATATTTTTCATTTCTAGTTAAAACAGAT
CATAATTGAATGTTTGCATAAGAAAACATGAAATGGAAGCCATCCATAGACAAGAAAAGTCCATT
TAAAGTAACTTAAGCCATTCAAAGCCTTGTTACTAGCTTTAAATGATTTGATAATATTATAAATG
ATTTTAAATCAAAATCCTTTTTCTTTTTACTTAAAATCAATCATAATTGGATGTTCACATAAGAA
AACATGAAGCGAATGGA
Found at i:78471 original size:19 final size:19
Alignment explanation
Indices: 78433--78472 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
78423 CTTATATCTC
*
78433 TCTTTAAATGGTTTTATAA
1 TCTTTAAATGATTTTATAA
78452 TCTTATAAATGATTTT-TAA
1 TCTT-TAAATGATTTTATAA
78471 TC
1 TC
78473 AAAATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (19 bp):
TCTTTAAATGATTTTATAA
Found at i:78600 original size:501 final size:499
Alignment explanation
Indices: 77933--78872 Score: 1219
Period size: 501 Copynumber: 1.9 Consensus size: 499
77923 TTGTCAGTCC
* * *
77933 CTTTAAATATTTTTATAATCTTCTTAATGATTTTGAATCAAAATATTTTTTATTTTTAGTTAAAA
1 CTTTAAATAGTTTTATAATCTTATAAATGATTTTGAATCAAAATATTTTTTATTTTTAGTTAAAA
77998 TTGATCATAATTGGATGTTTGCATCAAGAAACATGAAGCGAATGCCATCCATAGATCAAAAAAGT
66 TTGATCATAATTGGATGTTTGCATCAAGAAACATGAAGCGAATGCCATCCATAGATCAAAAAAGT
* * * *
78063 CCATTTAAAGTTACTTATGCCATCAATAGCCTTGTTACTCGCTTTAAATTATTTTATAATTTTAT
131 CCATTTAAAGTCACTCATGCCATCAATAGCCTTGTTACTCGCTTTAAATGATTTTATAATCTTAT
* ** * *
78128 AAAT-GATTTTAAGTCA-AAATCTTTTTTGTTTTTTCTTAAAATCG-ATCATAATTGGATGTTCA
196 AAATAG-TTTTAAAT-AGAAATCTTTTTCATTGTTGCTTAAAAT-GAATCATAATTGGATGTTCA
** * *
78190 CATTAGAAAACATGAAGCGAATGTTATCCATTGACAATAAAAGTCCATTTATAGTCACTCATGCC
258 CATTAGAAAACATGAAGCGAATGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATG-C
* * * * *
78255 TTTGAAAGTCTTGTTACTCCCTTTAAGTGGTTTAATAATATTATAAATTATTTCAAGTTAATTTT
322 TTTCAAAGCCTTGTTACTCCCTTTAAGTGGTTGAATAATATTAT-AATAATTTCAAGTCAATTTT
78320 TTTTTCAATTTTAGTTAAAACAAATCA-TAATTGGATGCTTGTATTGGAAAACATAAAACATAAA
386 TTTTTCAATTTTAGTTAAAACAAAT-ATTAATTGGATGCTTGTATTGGAAAACATAAAACATAAA
78384 CAAGAAAATTCCTTTATATTCACTCATGCCTTTGAAAGGCTTATATCTCT
450 CAAGAAAATTCCTTTATATTCACTCATGCCTTTGAAAGGCTTATATCTCT
* * *
78434 CTTTAAATGGTTTTATAATCTTATAAATGATTTTTAATCAAAATATTTTTTATTTTTGGTTAAAA
1 CTTTAAATAGTTTTATAATCTTATAAATGATTTTGAATCAAAATATTTTTTATTTTTAGTTAAAA
** * * * * * * * *
78499 TTGATTTTAATTGGATGTTTGCATCAATAAATATGAAGC-ATATGTCATCTATTGA-GAGGAAAG
66 TTGATCATAATTGGATGTTTGCATCAAGAAACATGAAGCGA-ATGCCATCCATAGATCA-AAAAA
* * * *
78562 GTCCATTTATAGTCACTCATGCCATCGAA-AGTCTTGTTAGTCGCTTTAAATGGTTTTATAATCT
129 GTCCATTTAAAGTCACTCATGCCATC-AATAGCCTTGTTACTCGCTTTAAATGATTTTATAATCT
* ** **
78626 TATAAATAGTTTTAAATAGAAATCTTTTTCATTGTTGGTTAAAATGAATCATTGTTGGATGTTTT
193 TATAAATAGTTTTAAATAGAAATCTTTTTCATTGTTGCTTAAAATGAATCATAATTGGATGTTCA
* * * *
78691 CATTAGAAAACATGAAGCGAATGCCATCAATTGAGAAGAAAAGTTCATTTATTGTCACTTATGCT
258 CATTAGAAAACATGAAGCGAATGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCT
** * * * *
78756 TTCAAAGCCTTGTTACTTGCTTTAATTGGTTGAATATTCTTATAATAATTTTAAGTCAATTTTTT
323 TTCAAAGCCTTGTTACTCCCTTTAAGTGGTTGAATAATATTATAATAATTTCAAGTCAATTTTTT
* * * * * *
78821 TTTTATTTTTGGTTAAAACATATATTAATTGGATGTTTGTATTGGGAAACAT
388 TTTCAATTTTAGTTAAAACAAATATTAATTGGATGCTTGTATTGGAAAACAT
78873 GAAATGAAAG
Statistics
Matches: 373, Mismatches: 59, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
498 1 0.00
499 63 0.17
500 41 0.11
501 265 0.71
502 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.42
Consensus pattern (499 bp):
CTTTAAATAGTTTTATAATCTTATAAATGATTTTGAATCAAAATATTTTTTATTTTTAGTTAAAA
TTGATCATAATTGGATGTTTGCATCAAGAAACATGAAGCGAATGCCATCCATAGATCAAAAAAGT
CCATTTAAAGTCACTCATGCCATCAATAGCCTTGTTACTCGCTTTAAATGATTTTATAATCTTAT
AAATAGTTTTAAATAGAAATCTTTTTCATTGTTGCTTAAAATGAATCATAATTGGATGTTCACAT
TAGAAAACATGAAGCGAATGCCATCAATTGACAAGAAAAGTCCATTTATAGTCACTCATGCTTTC
AAAGCCTTGTTACTCCCTTTAAGTGGTTGAATAATATTATAATAATTTCAAGTCAATTTTTTTTT
CAATTTTAGTTAAAACAAATATTAATTGGATGCTTGTATTGGAAAACATAAAACATAAACAAGAA
AATTCCTTTATATTCACTCATGCCTTTGAAAGGCTTATATCTCT
Found at i:79055 original size:172 final size:173
Alignment explanation
Indices: 78815--79263 Score: 495
Period size: 170 Copynumber: 2.6 Consensus size: 173
78805 TTTAAGTCAA
* * **
78815 TTTTTTTTTTATTTTTGGTTAAAACATAT-ATTAATTGGATGTTTGTATTGGGAAACATGAAATG
1 TTTTTTTTTCATTTTTGGTTAAAACATATCA-TAATTGGATGATTGTATTAAGAAACATGAAATG
** * *
78879 AAAGCCATTTATT-AATAAGAAAAGTAC-ATT-ATTGTCACTCATGCCATCAAAAG-CTTTGTTA
65 AAAGCCATCCATTGAA-AAGAAAAGT-CGATTGATAGTCACTCATGCCATCAAAAGAC-CTGTTA
* *
78940 CTCACTTTAAGTGATTTTGTAACCTCAAAAATGA-TTTTCAAATGAC
127 CTCACTTTAAGTGATTTTATAACCTCAAAAATGATTTTTCAAAAGAC
* * ** *
78986 TTTTTTTTTCATTTTTTGGTTAAAACAGATCATAATTAGATGATTGTATTAAGAAATGTGAAGTG
1 TTTTTTTTTCA-TTTTTGGTTAAAACATATCATAATTGGATGATTGTATTAAGAAACATGAAATG
* ** *
79051 AAAGCCATCCATTGGAAAGAAAAGTCGATTGATAGTCACTCATGCTTTTAAAAGACCTGTTACTC
65 AAAGCCATCCATTGAAAAGAAAAGTCGATTGATAGTCACTCATGCCATCAAAAGACCTGTTACTC
* *
79116 ACTTTAAGTGGTTTTATAACCTTAAAAATGATTTTTCAAAAGAC
130 ACTTTAAGTGATTTTATAACCTCAAAAATGATTTTTCAAAAGAC
* * ** ***
79160 ---TTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGTTTGCATCGAGAAACATGAAGCAA
1 TTTTTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGATTGTATTAAGAAACATGAAATGA
* * *
79222 AAGCCATCCATT-AACAAGAAAGGTCCATTGATAATCACTCAT
66 AAGCCATCCATTGAA-AAGAAAAGTCGATTGATAGTCACTCAT
79264 ATCTTCGAAA
Statistics
Matches: 235, Mismatches: 35, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
169 1 0.00
170 80 0.34
171 19 0.08
172 66 0.28
173 57 0.24
174 12 0.05
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.37
Consensus pattern (173 bp):
TTTTTTTTTCATTTTTGGTTAAAACATATCATAATTGGATGATTGTATTAAGAAACATGAAATGA
AAGCCATCCATTGAAAAGAAAAGTCGATTGATAGTCACTCATGCCATCAAAAGACCTGTTACTCA
CTTTAAGTGATTTTATAACCTCAAAAATGATTTTTCAAAAGAC
Found at i:82131 original size:171 final size:168
Alignment explanation
Indices: 81880--82330 Score: 469
Period size: 168 Copynumber: 2.7 Consensus size: 168
81870 TGAAGTAGAT
* * * ** *
81880 GCCACCCATTGACATGAAAAGTCTATTTATAGTCACTCATGCCTACGAAAGACTTGTTACTCATT
1 GCCATCCATTGACAAGAAAAGTCAATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCA-T
*** * *
81945 TTAAGCGGTTTTATAATCTTATAAATGATTTTGAATTGAATTTTTTTTCATTTTTACTTAAACCA
65 TTAAATAGTTTTATAATCTTATAAATGATTTTGAAAT-AATTTTTTTT-ATTTTTACTTAAAACA
* ** **
82010 TAACATAATTGGAAT-TAGC-TTTGGGAAATGTGAAGCGAAA
128 TAACATAATTGG-ATGTAGCAATCAGGAAACATGAAGCGAAA
* * * *
82050 GCCTTCCATTGACAAGAAAAGTCAATTTTATAGTCACTCATCCCTTTGAAAGCCTAGTTACTTAC
1 GCCATCCATTGACAAGAAAAGTCAA-TTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCA-
* * * * *
82115 TTTAAATAGATTTATAATCTTATAAATGA-TTTGAAGTCATTTTTTATATTTTTAGTTAAAACAT
64 TTTAAATAGTTTTATAATCTTATAAATGATTTTGAAATAATTTTTTTTATTTTTACTTAAAACAT
* **
82179 ATCATAATTGGATGTTTCAATCAGGAAACATGAAGCGAAA
129 AACATAATTGGATGTAGCAATCAGGAAACATGAAGCGAAA
* * * * * *
82219 GCCATCTATTGACAAGATAATTCCACTTATAGTCAGTCATGCCTTTGAAAGCCTTGTTACTCGAT
1 GCCATCCATTGACAAGAAAAGTCAATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTC-AT
* * *
82284 TTAAATAGTTTTATAATCTCATAGATAATTTT-AAATCAATTTTTTTT
65 TTAAATAGTTTTATAATCTTATAAATGATTTTGAAAT-AATTTTTTTT
82331 TGGTTAAAAT
Statistics
Matches: 230, Mismatches: 45, Indels: 13
0.80 0.16 0.05
Matches are distributed among these distances:
167 2 0.01
168 87 0.38
169 56 0.24
170 28 0.12
171 57 0.25
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39
Consensus pattern (168 bp):
GCCATCCATTGACAAGAAAAGTCAATTTATAGTCACTCATGCCTTTGAAAGCCTTGTTACTCATT
TAAATAGTTTTATAATCTTATAAATGATTTTGAAATAATTTTTTTTATTTTTACTTAAAACATAA
CATAATTGGATGTAGCAATCAGGAAACATGAAGCGAAA
Found at i:83158 original size:36 final size:35
Alignment explanation
Indices: 83111--83179 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 35
83101 ACAATATCAT
83111 GTCACACCCCATTGCCACAACAAA-AGATGGAGTCAA
1 GTCACACCCCATTGCCA-AACAAACA-ATGGAGTCAA
* *
83147 GTCACGCCCCATTGCCAAGCAAACAATGGAGTC
1 GTCACACCCCATTGCCAAACAAACAATGGAGTC
83180 TATGGGCATC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 13 0.43
36 17 0.57
ACGTcount: A:0.35, C:0.32, G:0.19, T:0.14
Consensus pattern (35 bp):
GTCACACCCCATTGCCAAACAAACAATGGAGTCAA
Found at i:86123 original size:170 final size:170
Alignment explanation
Indices: 85873--86409 Score: 484
Period size: 170 Copynumber: 3.2 Consensus size: 170
85863 NNNNNNNNNN
* * * * * *
85873 TTTATAATCTTATAAAT-ATTTTGAATTGAATTTTTGTCATTTTTGGTTAATATAGATCATAATT
1 TTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTAATTTTTAGTTAAAACAGATCATAATT
* * ** *
85937 GGATGTTTTCATTGGGAAACATGAAATCAAATCTTTCCATTGAGAAGAAAAGTCT-ATTTATAGT
66 GGATGTTTACATTGGGAAACATGAAATCAAAGCCATCCATTGACAAG-AAAGTCTCATTTATAGT
* * * * *
86001 CATTGATGCCT-TCGAAAGCCTAGTTACTTGCTTTAATTAGT
130 CAGTCATGCCTAT-GAAAGCCTAGTTACTCGCTCTAAATAGT
* * * * *
86042 TTTACAATGTTATATATGATTTTAAATTGTATTTTTTTTATTTTTAGTTAAAACAGATCATAATT
1 TTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTAATTTTTAGTTAAAACAGATCATAATT
* * * * * *
86107 GGATGTTTAAATTGGGAAACATGAAGTGAAAGCCATCCATTGACAAGAAATTTTCATTTCTAGTC
66 GGATGTTTACATTGGGAAACATGAAATCAAAGCCATCCATTGACAAGAAAGTCTCATTTATAGTC
* *
86172 AGTCATGCCTATGAAAGCCTTGTTACTCGCTCTAAATGGT
131 AGTCATGCCTATGAAAGCCTAGTTACTCGCTCTAAATAGT
* * * * *
86212 CTTATAGTCTTATAAATGATTTGAAATTAAAATCTTCTTTAATTTTTA-TTAAAATCA-ATCATA
1 TTTATAATCTTATAAATGATTTTAAATT-GAAT-TTTTTTAATTTTTAGTTAAAA-CAGATCATA
* * * * * **
86275 ATTGGATGTTTACATTAGGAAACGTG-AAGCGGATGCTC-TCTGTTGACAAGAAAG-CTCCATTT
63 ATTGGATGTTTACATTGGGAAACATGAAATC-AAAGC-CATCCATTGACAAGAAAGTCT-CATTT
* * * * * *
86337 ATAGTCATTCATGTC-ATTAAAAGCCTTGTTACACGCTTTAAAT-GAT
125 ATAGTCAGTCATGCCTA-TGAAAGCCTAGTTACTCGCTCTAAATAG-T
86383 TTTATAAT-TTATAAATGATTTTAAATT
1 TTTATAATCTTATAAATGATTTTAAATT
86410 AAAATTGTGA
Statistics
Matches: 298, Mismatches: 59, Indels: 21
0.79 0.16 0.06
Matches are distributed among these distances:
169 19 0.06
170 163 0.55
171 101 0.34
172 15 0.05
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (170 bp):
TTTATAATCTTATAAATGATTTTAAATTGAATTTTTTTAATTTTTAGTTAAAACAGATCATAATT
GGATGTTTACATTGGGAAACATGAAATCAAAGCCATCCATTGACAAGAAAGTCTCATTTATAGTC
AGTCATGCCTATGAAAGCCTAGTTACTCGCTCTAAATAGT
Found at i:93741 original size:15 final size:16
Alignment explanation
Indices: 93715--93747 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
93705 TCTGTGGATG
93715 ATGCAGTTTGCTTTTA
1 ATGCAGTTTGCTTTTA
93731 ATGCA-TTTGCTTTTA
1 ATGCAGTTTGCTTTTA
93746 AT
1 AT
93748 TTAGGGAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.21, C:0.12, G:0.15, T:0.52
Consensus pattern (16 bp):
ATGCAGTTTGCTTTTA
Found at i:95291 original size:169 final size:167
Alignment explanation
Indices: 94814--95298 Score: 460
Period size: 169 Copynumber: 2.9 Consensus size: 167
94804 CACATTTAAT
* * *
94814 AATGTAAACATCCAATTATGATACGTTTTAACAAAAAATGAAAAAAGATTTTAGTTTAAAAGCAT
1 AATGCAAACATCCAATTATGATACGTTTTAAC-AAAAA-G-AAAAAGATTTTA-ATTAAAATCAT
* * * * *
94879 TCATAAGATTA-AAAAGCCATTTAAAATGAGTAACAAGACTTTTAATGGCATGAGTGACTAAAAA
62 TTATAAGATTATAAAA-CCATTTAAAGTGAGTAACAAGGCTTTTGATGGCATGAATGACTAAAAA
* * * * *
94943 TGGA-TTTATCTTGTCAATGGATTGCATCCATTTCACGTTCCT
126 TGGACTTT-TCTTGTTAATGGATGGCATCCACTTAACGTTCCC
** * * * * * *
94985 AGATGCAAACATCCAATTGA-GATAATTTTTTTA-AAAAGGGAAAATATTTTGATTTAATATCAT
1 A-ATGCAAACATCCAATT-ATGAT-ACGTTTTAACAAAAAGAAAAAGATTTT-AATTAAAATCAT
* * * * *
95048 TTATAAGATTATAAAACCATTTAGAGTGAGTAATAAGGCCTTTGATGGC-TTAAGTGACTACAAA
62 TTATAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGATGGCATGAA-TGACTAAAAA
* * * *
95112 TGGCCTTTTCTTTTTAATGGATGGCAT-TAGCTTAAGGTTCCCC
126 TGGACTTTTCTTGTTAATGGATGGCATCCA-CTTAACGTT-CCC
* * * * *
95155 AATGCAAACATCCAATTATGATAGGTTTTAACAAAAACAAAAAGGATTTCAATTGAAATCATTTG
1 AATGCAAACATCCAATTATGATACGTTTTAACAAAAAGAAAAA-GATTTTAATTAAAATCATTTA
* **
95220 TAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGATGGCATGAATGAATAAAAATAAA
65 TAAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGATGGCATGAATGACTAAAAATGGA
95285 CTTTTCTTGTTAAT
130 CTTTTCTTGTTAAT
95299 TAGAAACATT
Statistics
Matches: 251, Mismatches: 50, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
168 10 0.04
169 192 0.76
170 19 0.08
171 5 0.02
172 18 0.07
173 7 0.03
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (167 bp):
AATGCAAACATCCAATTATGATACGTTTTAACAAAAAGAAAAAGATTTTAATTAAAATCATTTAT
AAGATTATAAAACCATTTAAAGTGAGTAACAAGGCTTTTGATGGCATGAATGACTAAAAATGGAC
TTTTCTTGTTAATGGATGGCATCCACTTAACGTTCCC
Found at i:96115 original size:28 final size:27
Alignment explanation
Indices: 96083--96143 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 27
96073 TCTTTATTCG
*
96083 AGATTCAAGAAATCTCTTTATATTAGGA
1 AGATTCAAGAAATCTCTTTAAATT-GGA
*
96111 AGATTCAAGAAATCTTTTTAAATTGGA
1 AGATTCAAGAAATCTCTTTAAATTGGA
*
96138 TGATTC
1 AGATTC
96144 CCAATTGGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 8 0.27
28 22 0.73
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (27 bp):
AGATTCAAGAAATCTCTTTAAATTGGA
Found at i:102061 original size:170 final size:169
Alignment explanation
Indices: 101681--102251 Score: 497
Period size: 170 Copynumber: 3.4 Consensus size: 169
101671 NNNNNNNNNN
* * * * * * *
101681 AGTAACAAGGCTTTC-AGTGGCATGGGTGACTATAAGTGGACTTTTCTTGTTAATGAATGGCATC
1 AGTAATAAGGCTTTCGA-TGGCATGAGTTACTATAAATGGATTTTTCTTGTCAATGGATGGCATC
* ** * ** * * *
101745 TACTTCACATTCCCCAATGCAAACATTTAATTATGACAGGTTTTAA-CAAAA-AAGGAAACAGAT
65 CACTTCACATTCAACAATGAAAACATCCAATTATGATAGGCTTTAACCAAAACAA--AAA-AGAA
* * * * **
101808 TTTGACTTAAACTCATTTAAAAGATACTAAAACCATATAAAGTG
127 TTTGATTTAAAATCATTTATAAGATA-TAAAACCATTTAAAGCA
* * * * *
101852 AGTAATAAGGCTTTCGATAGCATGAGTGAATATAAATGGACTTTTCTTGTCAATGGATAGCATCC
1 AGTAATAAGGCTTTCGATGGCATGAGTTACTATAAATGGATTTTTCTTGTCAATGGATGGCATCC
** * * * * * * *
101917 ACTTCATGTTTAACAGTGCAAGCATCCAATTATGATAGGTTTTAGCCAAAACAAAAAATAATTTG
66 ACTTCACATTCAACAATGAAAACATCCAATTATGATAGGCTTTAACCAAAACAAAAAAGAATTTG
*
101982 ATTTATAATCATTTATAAGATGATAAAACCATTTAAAGCA
131 ATTTAAAATCATTTATAAGAT-ATAAAACCATTTAAAGCA
* * * * * * **
102022 AGTAATAAGGCTTTCAATGGCATAAGTTACTACAAATGGATTTTTCCTGTTAATGGATGGTATTT
1 AGTAATAAGGCTTTCGATGGCATGAGTTACTATAAATGGATTTTTCTTGTCAATGGATGGCATCC
* * * * ** * *
102087 GCTTCACATTCCACAATGAAAATATCCAATTGTGATAGGCTTTAACCAAAATGAGAAAGATTTTG
66 ACTTCACATTCAACAATGAAAACATCCAATTATGATAGGCTTTAACCAAAACAAAAAAGAATTTG
* * *
102152 GTTTAAAATCATTTATAAGATTAGAAAACTA-TT--AGCA
131 ATTTAAAATCATTTATAAGA-TATAAAACCATTTAAAGCA
* * * *
102189 AGTAAAAAGGCTTTTGATGGCATGAGTTACCATAAATGGATTTTTTTTGTCAATGGATGGCAT
1 AGTAATAAGGCTTTCGATGGCATGAGTTACTATAAATGGATTTTTCTTGTCAATGGATGGCAT
102252 TGGCTTCAGG
Statistics
Matches: 322, Mismatches: 73, Indels: 14
0.79 0.18 0.03
Matches are distributed among these distances:
167 57 0.18
169 2 0.01
170 162 0.50
171 93 0.29
172 6 0.02
173 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (169 bp):
AGTAATAAGGCTTTCGATGGCATGAGTTACTATAAATGGATTTTTCTTGTCAATGGATGGCATCC
ACTTCACATTCAACAATGAAAACATCCAATTATGATAGGCTTTAACCAAAACAAAAAAGAATTTG
ATTTAAAATCATTTATAAGATATAAAACCATTTAAAGCA
Found at i:102246 original size:167 final size:169
Alignment explanation
Indices: 101940--102259 Score: 401
Period size: 167 Copynumber: 1.9 Consensus size: 169
101930 CAGTGCAAGC
* * * *
101940 ATCCAATTATGATAGGTTTTAGCCAAAACAAAAAATAATTTGATTTATAATCATTTATAAGATGA
1 ATCCAATTATGATAGGCTTTAACCAAAACAAAAAAGAATTTGATTTAAAATCATTTATAAGATGA
* * *
102005 TAAAACCATTTAAAGCAAGTAATAAGGCTTTCAATGGCATAAGTTACTACAAATGGATTTTTCCT
66 GAAAACCATTT-AAGCAAGTAAAAAGGCTTTCAATGGCATAAGTTACCACAAATGGATTTTTCCT
* * *
102070 GTTAATGGATGGTATTTGCTTCACATTCCACAATGAAAAT
130 GTCAATGGATGGCATTGGCTTCACATTCCACAATGAAAAT
* ** * * * *
102110 ATCCAATTGTGATAGGCTTTAACCAAAATGAGAAAGATTTTGGTTTAAAATCATTTATAAGATTA
1 ATCCAATTATGATAGGCTTTAACCAAAACAAAAAAGAATTTGATTTAAAATCATTTATAAGATGA
* ** * * **
102175 GAAAACTA-TT-AGCAAGTAAAAAGGCTTTTGATGGCATGAGTTACCATAAATGGATTTTTTTTG
66 GAAAACCATTTAAGCAAGTAAAAAGGCTTTCAATGGCATAAGTTACCACAAATGGATTTTTCCTG
102238 TCAATGGATGGCATTGGCTTCA
131 TCAATGGATGGCATTGGCTTCA
102260 GGTAGACCTG
Statistics
Matches: 126, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
167 64 0.51
169 2 0.02
170 60 0.48
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (169 bp):
ATCCAATTATGATAGGCTTTAACCAAAACAAAAAAGAATTTGATTTAAAATCATTTATAAGATGA
GAAAACCATTTAAGCAAGTAAAAAGGCTTTCAATGGCATAAGTTACCACAAATGGATTTTTCCTG
TCAATGGATGGCATTGGCTTCACATTCCACAATGAAAAT
Found at i:122666 original size:680 final size:670
Alignment explanation
Indices: 121342--122671 Score: 1457
Period size: 680 Copynumber: 2.0 Consensus size: 670
121332 TGTTACTTGC
* *
121342 TTTAACTAGTTTTATAATCTCATAAATGATTTTAAATCAAAAAATTTTTCATTTTTGATTAAAAC
1 TTTAACTAGTTTTATAATCTCATAAATGATTTTAAATCAAAAAACTTTTCATTTTTGACTAAAAC
* * * *
121407 TGATCATAATTGGATATTTTCATTAAGTAAAGTGAAGCAAATGGCATCTATTGACAAAAAAAGTC
66 TGATCATAATTGGATATTTGCATTAAG-AAAATAAAGCAAATGGCATCCATTG--AAAAAAAGTC
* * * * * * *
121472 CATTTATAGTAAGTCATACTTACAAAAGCTTTGTTACTCGCTTTAAGTGATTTAATAATCTTATA
128 CATTTATAGCAACTCACACCTACAAAAGCCTGGTTACTCACTTTAAGTGATTTAATAATCTTATA
* * ** *
121537 AATGATTTTTAATCAAAATTTTTTTATTTTTTGCTAAAACATATTATAATTGGATGCTTGCATCA
193 AATGATTTTCAATCAAAATTTTTTTATTTTTGGCTAAAACATATTATAATTCAATACTTGCATCA
* ***********
121602 AGAAACATGAAGTGAAAGTCATCNNNNNNNNNNNAAAGTACATTTATAGTCACTTATTCTTTCGA
258 AGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTACATTTATAGTCACTTATTCTTTCGA
* * * *
121667 AAGCCTTGTTACTTGCTTTAAATAGTTTTATAATCTTATGAATAACTTTAAATCAAAATCTTTTT
323 AAACCTTGTTACTTGCTTTAAATAGTTTTATAATCTCATCAATAACTTTAAATCAAAAGCTTTTT
* ** *
121732 CATTTTTAGTTNNNNNNNNNNATAATTGGTGGTTTGCGTTAGGAAACGTGAAGATGATGTCATCC
388 CATTTTTAGTT---------CATAATTGGTGGTTTGAATTAGGAAACATGAAGATGATGTCATCC
* *
121797 ATTGAGAAGAAAAGTCCATTTATAGTCACTTATGATATCGAAAGCCTTGTTTGTCGCTTTAGACG
444 ATTGAGAAGAAAAGTCCATTTATAGTCACTTATGACATCGAAAGCCTTGTTTGTCGCTTTAAACG
* ** * *
121862 GATTTATAATTTTATAAATGATTTTAAATCAGAATCGTTTCCATTTTTAATTAAAATTAGTAATA
509 AATTTATAAGCTTATAAATGATTTTAAATCAGAATCGTTTCCATTTTTAATTAAAATCAGAAATA
* * * ********** *
121927 ATTAGGTGATTGCATTGGGAAACTTGAAGCGGATGCCATCNNNNNNNNNNAATAGTCCATTTATA
574 ATTAGGTGATTGCATTGGCAAACATGAAGCGCATGCCATCCATTTACAAGAAAAGTCCATTTATA
121992 GTCACTTATGCTAACGAACCCCTGTTACTCAT
639 GTCACTTATGCTAACGAACCCCTGTTACTCAT
* * **
122024 TTTAATTAGTTTTATAATCTTATAAATGATTTTAAATCAAAATCCTTTTCATTTTTCG-CTAAAA
1 TTTAACTAGTTTTATAATCTCATAAATGATTTTAAATCAAAAAACTTTTCATTTTT-GACTAAAA
* * * *
122088 TTGATCATAATTGGATATTTGCATTGAA-AAACATAAAGCGAATGGCATCCATTG-ATAAGAGTC
65 CTGATCATAATTGGATATTTGCATT-AAGAAA-ATAAAGCAAATGGCATCCATTGAAAAAAAGTC
* * * *
122151 TATTTGTAGCAACTCACACCTA-AGAAAGCCTGGTTACTTACTTTAAGTGGTTTAATAATCTTAT
128 CATTTATAGCAACTCACACCTACA-AAAGCCTGGTTACTCACTTTAAGTGATTTAATAATCTTAT
* * *
122215 AAATGATTTTCAATCAAAATTTTTTTCATTTTTGGTTAAAACATATTATAATTCAATATTTTCAT
192 AAATGATTTTCAATCAAAATTTTTTT-ATTTTTGGCTAAAACATATTATAATTCAATACTTGCAT
** * * *
122280 TGAGACATATGAAGTGAAAGCCATCCATTGACAAGAAAAGTATATTTATAGTCACTTATTCTTTC
256 CAAGAAACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTACATTTATAGTCACTTATTCTTTC
* * * *
122345 GAAAACCTTGTTACTTGCTTTAAATGGTTTTATAATGTCATCAATGATTTTAAATCAAAAGCTTT
321 GAAAACCTTGTTACTTGCTTTAAATAGTTTTATAATCTCATCAATAACTTTAAATCAAAAGCTTT
* * * *
122410 TTCATTTTTGGTNNNNNNNNNNCATAATTGGTGGTTTGAATCT-TGAAACATGATG-TAGATGTC
386 TTCATTTTTAGT---------TCATAATTGGTGGTTTGAAT-TAGGAAACATGAAGAT-GATGTC
* * *
122473 ATCCATTGAGAAGAAAAGTCTATTTATAGTCACTTATGACATCGAAGGCCTTGTTTGTTGCTTTA
440 ATCCATTGAGAAGAAAAGTCCATTTATAGTCACTTATGACATCGAAAGCCTTGTTTGTCGCTTTA
* * * * *
122538 AATGAATTTATGAGCTTATAAATGATTTTAAATCGGAATCTTTTCCATTTTTGATTAAAATCAGA
505 AACGAATTTATAAGCTTATAAATGATTTTAAATCAGAATCGTTTCCATTTTTAATTAAAATCAGA
* ** * * *
122603 AATAATTGGGTTTTTTCATTGGCCAACATGAAGCTCATGCCATCCATTTACAAGAAAAGTCCATT
570 AATAATTAGGTGATTGCATTGGCAAACATGAAGCGCATGCCATCCATTTACAAGAAAAGTCCATT
122668 TATA
635 TATA
122672 ATCATTAATG
Statistics
Matches: 531, Mismatches: 101, Indels: 34
0.80 0.15 0.05
Matches are distributed among these distances:
678 1 0.00
679 84 0.16
680 342 0.64
681 4 0.01
682 97 0.18
683 3 0.01
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.38
Consensus pattern (670 bp):
TTTAACTAGTTTTATAATCTCATAAATGATTTTAAATCAAAAAACTTTTCATTTTTGACTAAAAC
TGATCATAATTGGATATTTGCATTAAGAAAATAAAGCAAATGGCATCCATTGAAAAAAAGTCCAT
TTATAGCAACTCACACCTACAAAAGCCTGGTTACTCACTTTAAGTGATTTAATAATCTTATAAAT
GATTTTCAATCAAAATTTTTTTATTTTTGGCTAAAACATATTATAATTCAATACTTGCATCAAGA
AACATGAAGTGAAAGCCATCCATTGACAAGAAAAGTACATTTATAGTCACTTATTCTTTCGAAAA
CCTTGTTACTTGCTTTAAATAGTTTTATAATCTCATCAATAACTTTAAATCAAAAGCTTTTTCAT
TTTTAGTTCATAATTGGTGGTTTGAATTAGGAAACATGAAGATGATGTCATCCATTGAGAAGAAA
AGTCCATTTATAGTCACTTATGACATCGAAAGCCTTGTTTGTCGCTTTAAACGAATTTATAAGCT
TATAAATGATTTTAAATCAGAATCGTTTCCATTTTTAATTAAAATCAGAAATAATTAGGTGATTG
CATTGGCAAACATGAAGCGCATGCCATCCATTTACAAGAAAAGTCCATTTATAGTCACTTATGCT
AACGAACCCCTGTTACTCAT
Found at i:123638 original size:169 final size:169
Alignment explanation
Indices: 123246--123642 Score: 394
Period size: 170 Copynumber: 2.3 Consensus size: 169
123236 NNNNNNNNAG
* * * ** * ** * * *
123246 TGATTTTATAATCATATCAATGATTTTAAATTAAAAGATTTTTTATTTTTTTTTAACATTGATTA
1 TGATTTTATAATCTTATAAATGATTTTAAA-TCAAATCTTTTTCATTTTTGGTTAA-AATAATCA
* * * * * * *
123311 TAATTGGATGTTTGCATCGTG-AAACATGAAGCAGATGCCATCCATTATCAAGAAGAGTTCATTT
64 TATTTAGATGTTTGTATTG-GAAAACATGAAGCAAATGCCATCCATTATCAAGAAAAGTGCATTT
123375 ATAGTCAATAATACCATTAAAAGCCTTGTTACTCGCTTCAAA
128 ATAGTCAATAATACCATTAAAAGCCTTGTTACTCGCTTCAAA
* *
123417 TGATTTTATAATCTTATAAATTATTTTAGATCAAAATCTTTTTCATTTTTGGTTAAAATAATCAT
1 TGATTTTATAATCTTATAAATGATTTTAAATC-AAATCTTTTTCATTTTTGGTTAAAATAATCAT
*
123482 ATTTAGATGTTTGTATTGGAAAACATGAAGCAAATGCCATCCATTGA-CAAGAAAAGTGGATTTA
65 ATTTAGATGTTTGTATTGGAAAACATGAAGCAAATGCCATCCATT-ATCAAGAAAAGTGCATTTA
* * ** ** * *
123546 TAGTCATTCAT-GTATTCGAAGCCTTGTTACTCGCTTTAAG
129 TAGTCAATAATACCATTAAAAGCCTTGTTACTCGCTTCAAA
123586 T-AGTTTTATAATCTTATAAATGA-TTTAAATTC-AATGCTTTTTTC-TATTTTGGTTAAA
1 TGA-TTTTATAATCTTATAAATGATTTTAAA-TCAAAT-C-TTTTTCAT-TTTTGGTTAAA
123643 GCATGTCATA
Statistics
Matches: 187, Mismatches: 31, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
167 3 0.02
168 8 0.04
169 63 0.34
170 68 0.36
171 45 0.24
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.42
Consensus pattern (169 bp):
TGATTTTATAATCTTATAAATGATTTTAAATCAAATCTTTTTCATTTTTGGTTAAAATAATCATA
TTTAGATGTTTGTATTGGAAAACATGAAGCAAATGCCATCCATTATCAAGAAAAGTGCATTTATA
GTCAATAATACCATTAAAAGCCTTGTTACTCGCTTCAAA
Found at i:123677 original size:169 final size:168
Alignment explanation
Indices: 123246--123705 Score: 434
Period size: 169 Copynumber: 2.7 Consensus size: 168
123236 NNNNNNNNAG
* * * ** * ** * * *
123246 TGATTTTATAATCATATCAATGATTTTAAATTAAAAGATTTTTTATTTTTTTTTAACATTGATTA
1 TGATTTTATAATCTTATAAATGATTTTAAA-TCAAATCTTTTTCATTTTTGGTTAA-AATAATCA
* * *
123311 TAATTGGATGTTTGCATCGTGAAACATGAAGCAGATGCCATCCATT-ATCAAGAAGAGTTCATTT
64 TAATTGGATGTTTGCATCG-GAAACATGAAGCAAATGCCATCCATTGA-CAAGAAAAGTGCATTT
123375 ATAGTCAATAATACCATTAAAAGCCTTGTTACTCGCTTCAAA
127 ATAGTCAATAATACCATTAAAAGCCTTGTTACTCGCTTCAAA
* *
123417 TGATTTTATAATCTTATAAATTATTTTAGATCAAAATCTTTTTCATTTTTGGTTAAAATAATCAT
1 TGATTTTATAATCTTATAAATGATTTTAAATC-AAATCTTTTTCATTTTTGGTTAAAATAATCAT
* * * * *
123482 ATTTAGATGTTTGTATTGGAAAACATGAAGCAAATGCCATCCATTGACAAGAAAAGTGGATTTAT
65 AATTGGATGTTTGCATCGG-AAACATGAAGCAAATGCCATCCATTGACAAGAAAAGTGCATTTAT
* * ** ** * *
123547 AGTCATTCAT-GTATTCGAAGCCTTGTTACTCGCTTTAAG
129 AGTCAATAATACCATTAAAAGCCTTGTTACTCGCTTCAAA
123586 T-AGTTTTATAATCTTATAAATGA-TTTAAATTC-AATGCTTTTTTC-TATTTTGGTTAAAGCAT
1 TGA-TTTTATAATCTTATAAATGATTTTAAA-TCAAAT-C-TTTTTCAT-TTTTGGTTAAA--AT
* * *
123647 -GTCATAATTGGATG-TTGCATCAGGAAACATGAAGCGAAA-GCTATCCATTGATAAGAAAA
59 AATCATAATTGGATGTTTGCATC-GGAAACATGAAGC-AAATGCCATCCATTGACAAGAAAA
123706 TTTTATATAT
Statistics
Matches: 239, Mismatches: 38, Indels: 26
0.79 0.13 0.09
Matches are distributed among these distances:
167 3 0.01
168 8 0.03
169 97 0.41
170 84 0.35
171 47 0.20
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (168 bp):
TGATTTTATAATCTTATAAATGATTTTAAATCAAATCTTTTTCATTTTTGGTTAAAATAATCATA
ATTGGATGTTTGCATCGGAAACATGAAGCAAATGCCATCCATTGACAAGAAAAGTGCATTTATAG
TCAATAATACCATTAAAAGCCTTGTTACTCGCTTCAAA
Found at i:125859 original size:73 final size:73
Alignment explanation
Indices: 125709--125870 Score: 173
Period size: 73 Copynumber: 2.2 Consensus size: 73
125699 AGAGACATTG
* * ** * * * **
125709 TTAGTCAACTAAGAGCTTGCTGCCAAAAACTGAGTTTAGAGACAAAAATGACTTAATGGACTAAG
1 TTAGTCGACTAAGAGCCTATTGTCAAAAACTGAGTTCAGAGACAAAAACGACTTAATCAACTAAG
* *
125774 AAGTATCG
66 AAGAATCA
* * *
125782 TTAGTTGACTAAGAGCCTATTGTCAAAAACTGGGTTCAGAGACATAAACGACTTAATCAACTAAG
1 TTAGTCGACTAAGAGCCTATTGTCAAAAACTGAGTTCAGAGACAAAAACGACTTAATCAACTAAG
*
125847 TAGCAAT-A
66 AAG-AATCA
125855 TTAGTCGACTAAGAGC
1 TTAGTCGACTAAGAGC
125871 ATTTTGTCTG
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
73 70 0.97
74 2 0.03
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (73 bp):
TTAGTCGACTAAGAGCCTATTGTCAAAAACTGAGTTCAGAGACAAAAACGACTTAATCAACTAAG
AAGAATCA
Found at i:127239 original size:170 final size:169
Alignment explanation
Indices: 127049--127476 Score: 431
Period size: 169 Copynumber: 2.5 Consensus size: 169
127039 NNNNNNNNNN
* *
127049 GTTTGCATTGAAAAACATGAAGTGAAAGCCATCCATTAATAAGAAAAGTCTATTTATAGTCACTT
1 GTTTGCA-TGAAAAACATGAAGTGAAAGCCATCCATTGATAAAAAAAGTCTATTTATAGTCACTT
* ** *
127114 CTTCTTTCGAAAGCCTTATTACTTGTTTTAAA-GTGATTTATATTCTTATA-ATGATTTTAAATC
65 CTCCTTTCGAAAGCCTTATTACTCATTTTAAATG-GATTTATAATCTTATATATGA-TTTAAATC
* * *
127177 AAAATCGTTAT-AGTTTTT-AGTTAAAATTAATCATAATTGGAT
128 AAAATAGTTATCA-TTTTTGA-TTAAAATCAATCATAATTGAAT
* * * * * *
127219 GTTTGCATCAAAAAACATGAAGCGAATGCTATCTATTGATAAAAAAAGTCTATTTATAG-AAC-T
1 GTTTGCAT-GAAAAACATGAAGTGAAAGCCATCCATTGATAAAAAAAGTCTATTTATAGTCACTT
* ** * * * *
127282 CACGCCATCGAAAGCCTTGTTCCTCATTTTAAATGGTTTTATAATCTTATATATGATTTAAATTA
65 CTC-CTTTCGAAAGCCTTATTACTCATTTTAAATGGATTTATAATCTTATATATGATTTAAATCA
* *
127347 AAATATTTTTCATTTTTGATTAAAATCAATCATAATTGAAT
129 AAATAGTTATCATTTTTGATTAAAATCAATCATAATTGAAT
** * * *
127388 GTTTGCAATGGGAAACATGAAGTGAATA-CCATCCATTGACAATAAAAGTCCATTTATAGTCACT
1 GTTTGC-ATGAAAAACATGAAGTGAA-AGCCATCCATTGATAAAAAAAGTCTATTTATAGTCACT
**
127452 AATGCCTTT-GAAAGCCTTATTACTC
64 TCT-CCTTTCGAAAGCCTTATTACTC
127477 TCTTTAAGTA
Statistics
Matches: 205, Mismatches: 42, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
168 2 0.01
169 125 0.61
170 75 0.37
171 2 0.01
172 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (169 bp):
GTTTGCATGAAAAACATGAAGTGAAAGCCATCCATTGATAAAAAAAGTCTATTTATAGTCACTTC
TCCTTTCGAAAGCCTTATTACTCATTTTAAATGGATTTATAATCTTATATATGATTTAAATCAAA
ATAGTTATCATTTTTGATTAAAATCAATCATAATTGAAT
Found at i:128436 original size:171 final size:168
Alignment explanation
Indices: 128221--128702 Score: 483
Period size: 170 Copynumber: 2.8 Consensus size: 168
128211 TTACATTGGA
* * * * * *
128221 AAACATGAAGTGAATACCATCCATTGATAGGAAAGGTCCATTTATAGTCATTAATGCCTTTGAAA
1 AAACATGAAGTGAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
** * * *
128286 GCCTTTTTACTCACTTTAAGTGCTTTTATAATCTTATAAATGATTTTAGATTGAATTTTGTTTCA
66 G-CTAGTTACTCACTTTAAGTGATTTTATAATCTTATAAATGATTTTAAATT-AATTTTTTTTCA
**
128351 TTTTTTGG-TAAAATGGAT-CAT-AACTGGGTGTCTGCATTAG-G
129 TTTTTTGGTTAAAACAGATGCATGAA-T--GT-TCTGCA-TAGAG
* * * *
128392 AAACATGAAGTGAAGGCCATCGACTGACAAGAAAAGTCCATTTATAATCACTCATGCCTTTGAAA
1 AAACATGAAGTGAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * * * * *
128457 GCTAGTTAC-CCCTTTTAAATGATTTTATCATCTTAAAAATGATTTGAAATTAATTTTTTTTTA-
66 GCTAGTTACTCAC-TTTAAGTGATTTTATAATCTTATAAATGATTTTAAATTAATTTTTTTTCAT
* * *
128520 TTTTTGGTTAAAACAGATGCTTGAATGTTTTGCATCGAG
130 TTTTTGGTTAAAACAGATGCATGAATGTTCTGCATAGAG
** * * * **
128559 AAATGTGAAGTGAATGCCATCCATTAAGAAGAAAAGTCCACTTATAGTCACTCATGCCTTCAAAA
1 AAACATGAAGTGAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
* * *
128624 GGCTAGTTACTCACTTTAAGTGGTTTTACAATATTATAAATGATTTTAAATTTAATTTTTTTTTC
66 -GCTAGTTACTCACTTTAAGTGATTTTATAATCTTATAAATGATTTTAAA-TTAA-TTTTTTTTC
*
128689 A-TTTTTGTTTAAAA
128 ATTTTTTGGTTAAAA
128703 AAANNNNNNN
Statistics
Matches: 255, Mismatches: 47, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
166 2 0.01
167 60 0.24
168 47 0.18
169 26 0.10
170 62 0.24
171 58 0.23
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (168 bp):
AAACATGAAGTGAATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCTTTGAAA
GCTAGTTACTCACTTTAAGTGATTTTATAATCTTATAAATGATTTTAAATTAATTTTTTTTCATT
TTTTGGTTAAAACAGATGCATGAATGTTCTGCATAGAG
Found at i:128612 original size:167 final size:170
Alignment explanation
Indices: 128397--128702 Score: 415
Period size: 167 Copynumber: 1.8 Consensus size: 170
128387 TTAGGAAACA
* * * **
128397 TGAAGTGAAGGCCATCGACTGACAAGAAAAGTCCATTTATAATCACTCATGCCTTTGAAA-GCTA
1 TGAAGTGAAGGCCATCCACTAACAAGAAAAGTCCACTTATAATCACTCATGCCTTCAAAAGGCTA
* *
128461 GTTAC-CCCTTTTAAATGATTTTATC-ATCTTAAAAATGATTTGAAA-TTAATTTTTTTTT-ATT
66 GTTACTCAC-TTTAAATGATTTTA-CAATATTAAAAATGATTTGAAATTTAATTTTTTTTTCATT
128522 TTTGGTTAAAACAGATGCTTGAATGTTTTGCATCGAGAAATG
129 TTTGGTTAAAACAGATGCTTGAATGTTTTGCATCGAGAAATG
* * * *
128564 TGAAGTGAATGCCATCCATTAAGAAGAAAAGTCCACTTATAGTCACTCATGCCTTCAAAAGGCTA
1 TGAAGTGAAGGCCATCCACTAACAAGAAAAGTCCACTTATAATCACTCATGCCTTCAAAAGGCTA
* * * *
128629 GTTACTCACTTTAAGTGGTTTTACAATATTATAAATGATTTTAAATTTAATTTTTTTTTCATTTT
66 GTTACTCACTTTAAATGATTTTACAATATTAAAAATGATTTGAAATTTAATTTTTTTTTCATTTT
*
128694 TGTTTAAAA
131 TGGTTAAAA
128703 AAANNNNNNN
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
167 52 0.44
168 38 0.32
169 15 0.13
170 13 0.11
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (170 bp):
TGAAGTGAAGGCCATCCACTAACAAGAAAAGTCCACTTATAATCACTCATGCCTTCAAAAGGCTA
GTTACTCACTTTAAATGATTTTACAATATTAAAAATGATTTGAAATTTAATTTTTTTTTCATTTT
TGGTTAAAACAGATGCTTGAATGTTTTGCATCGAGAAATG
Found at i:129472 original size:165 final size:166
Alignment explanation
Indices: 128151--134070 Score: 748
Period size: 171 Copynumber: 34.9 Consensus size: 166
128141 TAAATGGTTT
* *
128151 TAAATGATTTTAAATCAAAATCATTTT-TCTTTTTCATTAAAATCA-A-TCATAATCGGATGTTT
1 TAAATGATTTTAAATCAAAAT--TTTTAT-TTTTT-GTTAAAA-CATACT-ATAATTGGATGTTT
* * * * * * ** * *
128213 ACATT-GGAAAACATGAAGTGAATA-CCATCCATTGATAGGAAAGGTCCATTTATAGTCATTAAT
60 GCATTAGG-AAACGTGAAG-CAAAAGCCATCCATTGACA-AAAAATTCCATTTATAGTCACTCAT
* ** * *
128276 GCCTTTGAAAGCCTTTTTACTCACTTTAAGTGCTTTTATAATCTTA
122 GCCTTTGAAAGCCTTGTTACTTGCTTTAAATG-GTTTATAATCTTA
* * ** * * * * *
128322 TAAATGATTTTAGATTGAATTTTGTTTCATTTTTTGGTAAAATGGAT-C-ATAACTGGGTGTCTG
1 TAAATGATTTTA-AATCAAAATT-TTT-ATTTTTTGTTAAAA--CATACTATAATTGGATGTTTG
* ** * * * * *
128385 CATTAGGAAACATGAAGTGAAGGCCATCGACTGACAAGAAAAGTCCATTTATAATCACTCATGCC
61 CATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCC
* ** * *
128450 TTTGAAAG-CTAGTTAC-CCCTTTTAAATGATTTTATCATCTTA
125 TTTGAAAGCCTTGTTACTTGC-TTTAAATG-GTTTATAATCTTA
* * * ** * * ** *
128492 AAAATGATTTGAAATTAATTTTTTTTTATTTTTGGTTAAAAC--A-GATGCTTGAATGTTTTGCA
1 TAAATGATTTTAAATCAA--AATTTTTATTTTTTGTTAAAACATACTATAATTGGATG-TTTGCA
* * ** * * * * *
128554 -TCGAGAAATGTGAAGTGAATGCCATCCATTAAGAAGAAAAGTCCACTTATAGTCACTCATGCCT
63 TTAG-GAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCCT
** * * ** * * *
128618 TCAAAAGGCTAGTTACTCACTTTAAGTGGTTTTACAATATTA
126 TTGAAAGCCTTGTTACTTGCTTTAAATGG-TTTATAATCTTA
* ** * * *********
128660 TAAATGATTTTAAATTTAATTTTTTTTTCATTTTTGTTTAAAA-AAANNNNNNNNNNGATGTTTT
1 TAAATGATTTTAAA-TCAAAATTTTTAT--TTTTTG-TTAAAACATA-CTATAATTGGATG-TTT
* * ** * *
128724 GCATCAGGAAAGGTGAAGCGCAAGCCATCCATTGACAAGAAAGTTCCATTTATTA-TTACTCATG
60 GCATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTA-TAGTCACTCATG
* ** **********
128788 CCTTCGAAAGCCTAATTACNNNNNNNNNNTGGTTTATAATCTTA
123 CCTTTGAAAGCCTTGTTACTTGCTTTAAATGGTTTATAATCTTA
** *
128832 TAAATGATTTTTGATCAAAAAGTTTTTCTTTTTTTGTTAAAACATACTATAATTGGATGTTTGCA
1 TAAATGATTTTAAATC-AAAA-TTTTT-ATTTTTTGTTAAAACATACTATAATTGGATGTTTGCA
* * * * * * *
128897 TTAGGGAACGTTAAACAAAAGCCATCCATTAATAAAAATATTTCATTTATAGTCAAC-CATTCCT
63 TTAGGAAACGTGAAGCAAAAGCCATCCATTGACAAAAA-ATTCCATTTATAGTC-ACTCATGCCT
* * *
128961 TTGTAAGCCTTGTTACTTGTTTTAAATGGTTCTATAGTCTTA
126 TTGAAAGCCTTGTTACTTGCTTTAAATGGTT-TATAATCTTA
* * * * * * *
129003 TAAATTATTTTAAATCAAAATCTTCATAATTTTTTGTTAAAA-TTAATTATAACTAGATGTATGC
1 TAAATGATTTTAAATCAAAAT-TT--TTATTTTTTGTTAAAACAT-ACTATAATTGGATGTTTGC
* * * ** * *
129067 -GTCGAGAAACATGAAG-TGAATCCTATCCATTGACAAACAAAGTCCATTTATAGTCACTCATGC
62 ATTAG-GAAACGTGAAGCAAAAGCC-ATCCATTGACAAA-AAATTCCATTTATAGTCACTCATGC
*** * ********** * *
129130 CTCCAAAAGGCNNNNNNNNNNCTTTAAGTGGTTTTATAATATTA
124 CTTTGAAAGCCTTGTTACTTGCTTTAAATGG-TTTATAATCTTA
* * * *
129174 TAAATGATTTTAAATTCAAATTTTTTTCATTTTTGGTTAACACA-AGTCATAATTGGATGTGTTG
1 TAAATGATTTTAAA-TCAAA-ATTTTT-ATTTTTTGTTAAAACATACT-ATAATTGGATGT-TTG
* **
129238 CATTAGGAAAGGTGAAGCGCAAGCCATCCATTGACAAGAAAATTCCATTTATAGTCACTCATGCC
61 CATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCC
** *
129303 TTTGAAAGCCTAATTACTTGCTTTAAGTGGTTTATAATCTTA
125 TTTGAAAGCCTTGTTACTTGCTTTAAATGGTTTATAATCTTA
** * * *
129345 TAAATGATTTTTGAT-TAAATTTTT-TTTTTAGTTAAAATATACTATAATTGGATGTTTGCATTA
1 TAAATGATTTTAAATCAAAATTTTTATTTTTTGTTAAAACATACTATAATTGGATGTTTGCATTA
* * * * *
129408 GGGAACGTTAAGCAAAAGCCATCCATTGACAAGAAAAATCCATTTGTAGTCAGC-CATTCCTTTG
66 GGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCA-CTCATGCCTTTG
*
129472 AAAGCCTTGTTACTTACTTTAAATGGTTTTATAATCTTA
129 AAAGCCTTGTTACTTGCTTTAAATGG-TTTATAATCTTA
* * * * * * * *
129511 TAAATTATTTAAAATCAAAATCTTCATCATTTTTAGTTTAAA-TTAATTATAATTGGATGTATGC
1 TAAATGATTTTAAATCAAAAT-TT--TTATTTTTTGTTAAAACAT-ACTATAATTGGATGTTTGC
* * * ** * *
129575 ATCAAGAAACATGAAG-TGAATCGCATCCATTGAC-AAAAATGCC--TTAT--T-ACTC--G-CT
62 ATTAGGAAACGTGAAGCAAAAGC-CATCCATTGACAAAAAATTCCATTTATAGTCACTCATGCCT
** * *
129630 TTAGCTAG--TTTTATAATT--TTATAAAT-G---AT-A---T-
126 TT-GAAAGCCTTGT-TACTTGCTT-TAAATGGTTTATAATCTTA
* * * ********* *
129661 T-AA--A-TTGAAATC----TCTTTTGTTTTTGGTNNNNNNNNNNC-ATAAGTGGATGTTTGCAT
1 TAAATGATTTTAAATCAAAAT-TTTTATTTTTTGT-TAAAACATACTATAATTGGATGTTTGCAT
* * * ** * * *
129717 T-GGAAATGTGAAGCAAATGGCC-TCCATTGACAAGAAAAGTATATTTCTAGTCACTCATACTTT
64 TAGGAAACGTGAAGCAAA-AGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCCTT
* ** *
129780 TAAAAGCCTTGTTTA-TCACTTTAAGTGGTTTAATAATCTTA
127 TGAAAGCCTTG-TTACTTGCTTTAAATGGTTT-ATAATCTTA
* * * * * *
129821 TCAATGATTTTAAATCAAAATTTTT-TTCATTACCTGTTAAAAACAGA-TTTGAACTGGCTGTTT
1 TAAATGATTTTAAATCAAAATTTTTATT--TT--TTGTT-AAAACATACTAT-AATTGGATGTTT
* * * **** * *
129884 GAATTAGTAAATGTGAAATGGAAGCTATCTATTGACAAGAAAAGTT-CATTTA-ATGTCACTCAT
60 GCATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAA-TTCCATTTATA-GTCACTCAT
* ** * * *** *
129947 ACCTTCAAAAGCTTTATTACTCATTTTAAATAGTTTTATAATCTTA
122 GCCTTTGAAAGCCTTGTTACTTGCTTTAAAT-GGTTTATAATCTTA
** * ********* * *
129993 CCAATGATTTTAAATGANNNNNNNNNNTTTGTTTAGTTAAAATCGAT-C-ATAATTGGGTGTTTA
1 TAAATGATTTTAAATCA-AAATTTTTATTT-TTT-GTTAAAA-C-ATACTATAATTGGATGTTTG
* * * * * * * * *
130056 CATTAGGAAACATGAAGCAAATGACATCTATTGATAAGAAAAGTCCATTCAGAGTAACTCATGCC
61 CATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCC
* ********** * * *
130121 TATGAAAGCCTNNNNNNNNNNTTTAAGTGATTTAACAATCTTA
125 TTTGAAAGCCTTGTTACTTGCTTTAAATGGTTT-ATAATCTTA
* * * * * *
130164 TAAATGATTTTTAAT-AGGATATTTTTTAATTTCTAGTTAACACAGA-TCATAATTGGATGTTTG
1 TAAATGATTTTAAATCA--A-AATTTTT-ATTTTTTGTTAAAACATACT-ATAATTGGATGTTTG
* * * * ** * * * * **
130227 CACTGGGAAATGT-ATAGCCAAATTCATCCATTGACAAGAAAAGTACATTTATAATCAGTCATTT
61 CATTAGGAAACGTGA-AGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGC
* * * * **
130291 CTTTAAAAGCCTTATTTGA-TCGCTTAAAATAATTTTATAATCTTA
124 CTTTGAAAGCCTT-GTT-ACTTGCTTTAAAT-GGTTTATAATCTTA
* * * * * * * *
130336 TAGATTACTTTAAATC-AAATTCTTCATCATTTTTAGTTGAAA-TTAATCATAATTGGATTTTTG
1 TAAATGATTTTAAATCAAAATT-TT--T-ATTTTTTGTTAAAACATACT-ATAATTGGATGTTTG
* * *** * * * * *
130399 CATTAGGAAACAT-CAGGTGAATCCCTGGCATTGACAAAAAA-GCACAATTATAGTCACTCATG-
61 CATTAGGAAACGTGAAGCAAAAGCCAT-CCATTGACAAAAAATTC-CATTTATAGTCACTCATGC
* * *
130461 CTAATG-AACCCTTGTTAC-T--TATAAAT-G------AT-TT-
124 CT-TTGAAAGCCTTGTTACTTGCTTTAAATGGTTTATAATCTTA
* * *
130492 TAAATCA----AAATC----TTTTTCA-TTTTTGATTAAAA-TTGA-TCATAATTGGATATTTGC
1 TAAATGATTTTAAATCAAAATTTTT-ATTTTTTG-TTAAAACAT-ACT-ATAATTGGATGTTTGC
* * * * * * * *
130546 ATTAAGAAAAGTGAAGCGAATGGCATCCATTGACAAGAAAAGTCCATTTATAGTAACTCAT-ACT
62 ATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCCT
** ** * *
130610 TACAAAAGCCTTGTTACTCACTTTAAGTGGTTTAATAATCTTT
126 T-TGAAAGCCTTGTTACTTGCTTTAAATGGTTT-ATAATCTTA
* * * * * *
130653 TAAATAATTTTTAATCAAAATTTATTCATTTCTAGTTAAAACATATTATAATTGGATGCTTGCAT
1 TAAATGATTTTAAATCAAAATTT-TT-ATTTTTTGTTAAAACATACTATAATTGGATGTTTGCAT
* *********** ** * * * * * *
130718 CAANNNNNNNNNNGTGAAAGTCATCCATTGACAAGAAAAGTACATTTATTGTCACTTAT-TCTTT
64 TAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCCTTT
130782 CGAAAGCCTTGTTACTTGCTTTAAATGGTTTTATAATCTTA
128 -GAAAGCCTTGTTACTTGCTTTAAATGG-TTTATAATCTTA
* * ******** *
130823 TCAATGACTTTAAATCANNNNNNNNNNCATTTTTAGTTAAAATCA-A-TCATAATTGG-TGGTTT
1 TAAATGATTTTAAATCA---AAATTTTTATTTTTTGTTAAAA-CATACT-ATAATTGGAT-GTTT
* *** * * * * * *
130885 GCGTTAGGAAACGTGAAGTGGATGTCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTTATG-
60 GCATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGC
* * ** * *
130949 ATATCGAAAGCCTTGTTTGTCGCTTTAGATGGATTTATAATCTTA
124 CT-TTGAAAGCCTTGTTACTTGCTTTAAATGG-TTTATAATCTTA
* * * * * *
130994 TAAATAATTTTAAGTCAGAATCGTTTCCA-TTTTTGATTAAAA-TTAGTAATAATTAGG-TGTTT
1 TAAATGATTTTAAATCAAAAT--TTT-TATTTTTTG-TTAAAACATACT-ATAATT-GGATGTTT
* * * * * **
131056 GCATTAGGAAACTTGAAGCAGATGCCATCCATTGACAAGAATAGTCCATTTATAGTCACTTGTG-
60 GCATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGC
** * *** *
131120 CTAACG-AACCCTTGTTACTCATTTTAATTGGTTTTATAATCTTA
124 CT-TTGAAAGCCTTGTTACTTGCTTTAAATGG-TTTATAATCTTA
* * * * *
131164 TAAATAATTTTAAATCAAAATCCTTTTTATTTTTGGTTAAAA-TTGA-TCATAATTGGATATTTA
1 TAAATGATTTTAAATCAAAA---TTTTTATTTTTTGTTAAAACAT-ACT-ATAATTGGATGTTTG
* * * * * * * * * * **
131227 CATT-GGAAATCATAAAGCGAATAG-AATCCATTG--ATAACAGTCTATTTGTAGTAACTCACAC
61 CATTAGGAAA-CGTGAAGC-AAAAGCCATCCATTGACAAAAAATTCCATTTATAGTCACTCATGC
** * *
131288 CTAAGAAAGCCTTGTTACTTACTTTAAGTGGTTTAATAATCTTA
124 CTTTGAAAGCCTTGTTACTTGCTTTAAATGGTTT-ATAATCTTA
* * * * * *
131332 TAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAATATATTATAATTCGATATTTTCAT
1 TAAATGATTTTAAATCAAAA--TTTTTATTTTTTGTTAAAACATACTATAATTGGATGTTTGCAT
** ** * ** *
131397 TCA-GAAATATGAAGTGAAAGCCATCCATTGACAAGAAAAGTATATTTATAGTCACTCAT-TCTT
64 T-AGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCCTT
* * * *
131460 TCGAAAACCTTGTTACCTGCTTTAAATAGTTTTATAATGTTA
127 T-GAAAGCCTTGTTACTTGCTTTAAAT-GGTTTATAATCTTA
* * *
131502 TCAACGATTTTAAATCAAAAGTTTTTTCATTTTTGGTTAAAATCA-A-TCATAATTGG-TGGTTT
1 TAAATGATTTTAAATCAAAA--TTTTT-ATTTTTTGTTAAAA-CATACT-ATAATTGGAT-GTTT
* * * * * * * * * * *
131564 GAATCTTGAAAACATGAAGTAGATA-TCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTTAT
60 GCAT-TAGGAAACGTGAAGCA-AAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCAT
* * * ** * * *
131628 GACATCGAAAGCCTTGTTTGTTGGTTTAAATGAATTTATGATCTTA
122 GCCTTTGAAAGCCTTGTTACTTGCTTTAAATG-GTTTATAATCTTA
* ** * * * * * * *
131674 TAAATGATTTTAAATCGGAATCATTTCCATTTTTTATTAAAATCAGA-AAAAATTGGGTCTTTTC
1 TAAATGATTTTAAATC--AA-AATTTTTATTTTTTGTTAAAA-CATACTATAATTGGATGTTTGC
* * *** * * * * * * *
131738 ATTGGGCAACGTGAAGTGCATGCCATCCATTTATAGGAAAAGTCCATTTATAGTCATTAATGCCT
62 ATTAGGAAACGTGAAGCAAAAGCCATCCATTGACA-AAAAATTCCATTTATAGTCACTCATGCCT
* * * * ** *
131803 TCGAAAGCCTTGTTACTTGCTTTAAGTAGTTTGTTAAGGTCA
126 TTGAAAGCCTTGTTACTTGCTTTAAATGGTTT-ATAATCTTA
* * * * * **
131845 TAAATGATTATCAATCTAAATTTTT-TTCATTTCTAGTTAAAACA-AATCATAATTGGATATTCA
1 TAAATGATTTTAAATCAAAATTTTTATT--TTT-T-GTTAAAACATACT-ATAATTGGATGTTTG
* * ** * *
131908 CGTAAAAAAACATGAAGCAAAAGCCATCCATTGATATCCATTGATAAGAAAAGTCCATTTATAGT
61 CATTAGGAAACGTGAAGCAAAAGCCATCCATTG--A--C------AA-AAAATTCCATTTATAGT
** ** * *
131973 CACTCATG-CTTTCGAAAGCCTTGTTACTCACTTTAAATAATTTAATACTCCTA
115 CACTCATGCCTTT-GAAAGCCTTGTTACTTGCTTTAAATGGTTT-ATAATCTTA
* * * * * *
132026 GAAATGTTTTTAGACCAAAATATTTTATTCTTGTTGGTTAATAAAAATA-TCATAATTTGATGTT
1 TAAATGATTTTAAATCAAAAT-TTTTATT-TT-TT-GTT-A-AAACATACT-ATAATTGGATGTT
* ** ** * ** * *
132090 TGCATTA-AAAAGCGTGAAGTGACTGCCATCCATTGAGAAGAAAAGCCCA-CT-TA-TCACCCAT
59 TGCATTAGGAAA-CGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCAT
* * * * * * *
132151 GCCATCGAAGGCCATGCTA-TTCACTTTAAATGTTTTTATAATCTTA
122 GCCTTTGAAAGCCTTGTTACTT-GCTTTAAATG-GTTTATAATCTTA
* * ** ** * * * ** **
132197 TAAATGATCTTAAATCAAAGTCCTT-TTCGTT-TTCAATCA-A-T-TATTTTTAT-TTTTAATTA
1 TAAATGATTTTAAATCAAAATTTTTATTTTTTGTTAAAACATACTATAATTGGATGTTTGCATTA
** * ** * * * ** ** * * *
132256 AAATATATCAT-AATTAGATG-CTTTTATTGGGAAACATGAA--GCA--GA-AGCCA-TCCATTG
66 GGA-A-A-CGTGAAGCAAAAGCCATCCATTGACAAA-A--AATTCCATTTATAGTCACT-CA-TG
* *** * * * * * *
132313 -ATAAAAAAGTGCATTACTAGTTACTCATGCTTTTGAACGCCTTTTTAGTCACTT-
123 CCTTTGAAA--GC----CTTGTTACT--TGC-TTTAAATG-GTTTATAAT--CTTA
* * * * * *
132367 TACATGATTTTATAATCATATCAATGATATTAAATTAAAAGATTTT-TTTATA-TTGATTATAAT
1 TAAATGATTTTA-AATCA-A--AAT--T-TT-TATT------TTTTGTTAAAACAT-ACTATAAT
* * * * * * * *
132430 TGGATGTTTGCATCAAGAAACATGAAGCAGATGCCATCCATT-ATCAAGAAGAGTCTATTTATAG
51 TGGATGTTTGCATTAGGAAACGTGAAGCAAAAGCCATCCATTGA-CAA-AAAATTCCATTTATAG
* * * * * * * * *
132494 TGAATAATGCCATTAAAAGCCTTATTACTCGCTTCAAATGATTTTATAATCTTA
114 TCACTCATGCCTTTGAAAGCCTTGTTACTTGCTTTAAATG-GTTTATAATCTTA
* * * * *
132548 TAAATAATTTTAGATCAAAATCTTTTTCATTTTTGGTT-AAA-ATAATCATATTTGGATGTTTGC
1 TAAATGATTTTAAATCAAAA--TTTTT-ATTTTTTGTTAAAACATACT-ATAATTGGATGTTTGC
** * * * * *
132611 ATT-GGAAAACACGAAGCAAATGTCATCCATTGATAAGAAAAGTGCATTTATAGTCACTCATG--
62 ATTAGG-AAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCC
* ** * * *
132673 TGTTCAAAGCCTTGTTACTCACTTTAAGTAGTTTTAAAATCTTA
125 T-TTGAAAGCCTTGTTACTTGCTTTAAAT-GGTTTATAATCTTA
** * * *
132717 TAAATGATTTTAAATTCAATGTTTTTTTCTATTTTAGTTAAAGCAT-GTCATAATTGGATG-TTG
1 TAAATGATTTTAAA-TCAAAATTTTTAT-T-TTTT-GTTAAAACATACT-ATAATTGGATGTTTG
* * * ** * * * *
132780 CATCAGGAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAATTTTATATATAGCCATTCATGGC
61 CATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCC
* * * *********** * *
132845 TTCGACAGCCTAGTCNNNNNNNNNNAATGATTTTATAATTTTA
125 TTTGAAAGCCTTGTTACTTGCTTTAAATG-GTTTATAATCTTA
** ** * * * *
132888 TAAATGATTTTCGATCAATTTTTTTCATTTTTGGTTAAAATAGA-TAATAATTGGATGATTGCAT
1 TAAATGATTTTAAATCAAAATTTTT-ATTTTTTGTTAAAACATACT-ATAATTGGATGTTTGCAT
* * * * * *
132952 TAGGAAATGTGAAGTAAAAGCCATCCATTGATAACAAAATTCCATTTATAGTTAGTCATTCCTTT
64 TAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCCTTT
* * * *
133017 GAAAGCCTTGTCAATTGCTTTAAATGGTTTTATAATCATG
128 GAAAGCCTTGTTACTTGCTTTAAATGG-TTTATAATCTTA
* * * * * * ** *
133057 TAAATTATTTTAAATCAAAATCTTTATCATTTTTGGTTAAAA-TTAATCGTAGTTAAATATTTGC
1 TAAATGATTTTAAATCAAAAT-TTT-T-ATTTTTTGTTAAAACATACT-ATAATTGGATGTTTGC
* * * * * * **
133121 ATCAGGAAACATGAAGC-CAATCCTTTCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGAA
62 ATTAGGAAACGTGAAGCAAAAGCC-ATCCATTGAC-AAAAAATTCCATTTATAGTCACTCATGCC
** * ** * *
133185 AATG-AACCCTTGTTACTCACTTTAATTGATTTTATAATCTTA
125 TTTGAAAGCCTTGTTACTTGCTTTAAATG-GTTTATAATCTTA
** * * * * * *
133227 TAAATGGCTTTAAATTGAAATCTTTTTTCATTTTTGGTTAAAA-TTGATTGTAATTGGATGTTTG
1 TAAATGATTTTAAA-TCAAA--ATTTTT-ATTTTTTGTTAAAACAT-ACTATAATTGGATGTTTG
* * * * * * * * * * *
133291 CATTACGAAACATAAAGCGAATGTCATCCATTAATAAGAAAAGTCCATTTATAATAACTCAT-CC
61 CATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCC
* * *
133355 TTACGAAAGCCTTGTTACTTGGTTTAAGTGGTTTAATAATCTTA
125 TT-TGAAAGCCTTGTTACTTGCTTTAAATGGTTT-ATAATCTTA
* ******** *
133399 TAAATGATTTTCAATCAAAATTCNNNNNNNNNNTAGTT-AAACATA-TCATAATTGGATGTTTGC
1 TAAATGATTTTAAATCAAAATT---TTTATTTTTTGTTAAAACATACT-ATAATTGGATGTTTGC
* * * *** * * * *
133462 A-TCGAAAACGTAAAGTGGAAGCCATCCATTGATAAGAAAAGTACATTTATAGTCACTCAT-ACT
62 ATTAGGAAACGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGCCT
*
133525 TTCGAAATCCTTGTTACTTGCTTTAAATGGATTTATAATCTTA
126 TT-GAAAGCCTTGTTACTTGCTTTAAATGG-TTTATAATCTTA
** ******* *
133568 CCAATGATTTTAAATNNNNNNNNNNTTT-GTTTTTGATTAAAATCGAT-C-ATAATTGG-TGGTT
1 TAAATGATTTTAAAT---CAAAATTTTTATTTTTTG-TTAAAA-C-ATACTATAATTGGAT-GTT
* * ** * * **
133629 TGCATCAGGAAACATCTAGCAGATA-CCATCCATTGATAACAAAA-TCCATTTATAGGAACTCAT
59 TGCATTAGGAAACGTGAAGCA-AAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCAT
* * * * * *********
133692 G-CTATCGAAAGCATTCTTACTCGATTTANNNNNNNNNNTAATCTTA
122 GCCT-TTGAAAGCCTTGTTACTTGCTTTA-AATGGTTTATAATCTTA
* * *
133738 TAAATGATTTTTAATCAAAATCTTTTCTGTTTTTGGTTAAAACCAGT-C-ATAATTGGATGTTTA
1 TAAATGATTTTAAATCAAAAT-TTTTAT-TTTTT-GTTAAAA-CA-TACTATAATTGGATGTTTG
* ** * * * * *
133801 CATTAGGAAACGTTAAGCGGATGCCATCCATTGACGAAAAAAATCCAATTATTGTCACTGATGCC
61 CATTAGGAAACGTGAAGCAAAAGCCATCCATTGAC-AAAAAATTCCATTTATAGTCACTCATGCC
* * * ** * *
133866 TTCGAACGCTTTGTTACTCACTTTAAGTGGTTTAATAATTTTA
125 TTTGAAAGCCTTGTTACTTGCTTTAAATGGTTT-ATAATCTTA
* * * ** *
133909 CAAATAATTTTCAATCAATTTTTTTTTTCATTTTTTGTTAAAACATA-TCATAATTGGATGATTG
1 TAAATGATTTTAAATCAA---AATTTTT-ATTTTTTGTTAAAACATACT-ATAATTGGATGTTTG
* * * * * * * * *
133973 CATCA-GAAACCATGAAACGAGAGCCATCCATTCACAAGAAAAGTCCATATATAGTCACTCATGT
61 CATTAGGAAA-CGTGAAGCAAAAGCCATCCATTGACAA-AAAATTCCATTTATAGTCACTCATGC
* *
134037 CTTTGAAATCTTTGTTACTTGCTTTAAATGGTTT
124 CTTTGAAAGCCTTGTTACTTGCTTTAAATGGTTT
134071 NNNNNNNNNN
Statistics
Matches: 4123, Mismatches: 1228, Indels: 795
0.67 0.20 0.13
Matches are distributed among these distances:
139 18 0.00
140 27 0.01
141 5 0.00
142 4 0.00
143 3 0.00
145 6 0.00
146 56 0.01
147 28 0.01
148 16 0.00
149 8 0.00
150 9 0.00
151 10 0.00
152 6 0.00
154 1 0.00
155 4 0.00
156 6 0.00
157 2 0.00
158 2 0.00
159 15 0.00
160 38 0.01
161 24 0.01
162 12 0.00
163 5 0.00
164 9 0.00
165 91 0.02
166 70 0.02
167 160 0.04
168 140 0.03
169 335 0.08
170 798 0.19
171 1270 0.31
172 562 0.14
173 122 0.03
174 24 0.01
175 1 0.00
176 5 0.00
177 4 0.00
179 4 0.00
180 10 0.00
181 77 0.02
182 22 0.01
183 10 0.00
184 38 0.01
185 13 0.00
186 5 0.00
187 9 0.00
188 16 0.00
189 11 0.00
190 3 0.00
191 8 0.00
192 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.37
Consensus pattern (166 bp):
TAAATGATTTTAAATCAAAATTTTTATTTTTTGTTAAAACATACTATAATTGGATGTTTGCATTA
GGAAACGTGAAGCAAAAGCCATCCATTGACAAAAAATTCCATTTATAGTCACTCATGCCTTTGAA
AGCCTTGTTACTTGCTTTAAATGGTTTATAATCTTA
Found at i:129529 original size:508 final size:502
Alignment explanation
Indices: 128637--129611 Score: 1280
Period size: 508 Copynumber: 1.9 Consensus size: 502
128627 TAGTTACTCA
* * *
128637 CTTTAAGTGGTTTTACAATATTATAAATGATTTTAAATTTAATTTTTTTTTCATTTTTGTTTAAA
1 CTTTAAGTGGTTTTACAATATTATAAATGATTTTAAATTCAATATTTTTTTCATTTTTGGTTAAA
********** * *
128702 AAAANNNNNNNNNNGATGTTTTGCATCAGGAAAGGTGAAGCGCAAGCCATCCATTGACAAGAAAG
66 AAAAGTCATAATTGGATGTGTTGCATCAGGAAAGGTGAAGCGCAAGCCATCCATTGACAAGAAAA
* **********
128767 TTCCATTTATTATTACTCATGCCTTCGAAAGCCTAATTACNNNNNNNNNNTGGTTTATAATCTTA
131 TTCCATTTATTATCACTCATGCCTTCGAAAGCCTAATTACTTGCTTTAAGTGGTTTATAATCTTA
*
128832 TAAATGATTTTTGATCAAAAAGTTTTTCTTTTTTTGTTAAAACATACTATAATTGGATGTTTGCA
196 TAAATGATTTTTGAT-AAAAAG-TTTTCTTTTTTAGTTAAAACATACTATAATTGGATGTTTGCA
* * *
128897 TTAGGGAACGTTAAACAAAAGCCATCCATTAATAAAAATATTTCATTTATAGTCAACCATTCCTT
259 TTAGGGAACGTTAAACAAAAGCCATCCATTAACAAAAATAATCCATTTATAGTCAACCATTCCTT
* ** * *
128962 TGTAAGCCTTGTTACTTGTTTTAAATGGTTCTATAGTCTTATAAATTATTTTAAATCAAAATCTT
324 TGAAAGCCTTGTTACTTACTTTAAATGGTTCTATAATCTTATAAATTATTTAAAATCAAAATCTT
* * *
129027 CATAATTTTTTGTTAAAATTAATTATAACTAGATGTATGCGTCGAGAAACATGAAGTGAATC-CT
389 CATAATTTTTAGTTAAAATTAATTATAACTAGATGTATGCATCAAGAAACATGAAGTGAATCGC-
129091 ATCCATTGACAAACAAAGTCCATTTATAGTCACTCATGCCTCCAAAAGGC
453 ATCCATTGACAAACAAAGTCCATTTATAGTCACTCATGCCTCCAAAAGGC
*
129141 NNNNNNNNNNCTTTAAGTGGTTTTATAATATTATAAATGATTTTAAATTCAA-ATTTTTTTCATT
1 ----------CTTTAAGTGGTTTTACAATATTATAAATGATTTTAAATTCAATATTTTTTTCATT
* * *
129205 TTTGGTTAACACAAGTCATAATTGGATGTGTTGCATTAGGAAAGGTGAAGCGCAAGCCATCCATT
56 TTTGGTTAAAAAAAGTCATAATTGGATGTGTTGCATCAGGAAAGGTGAAGCGCAAGCCATCCATT
*
129270 GACAAGAAAATTCCATTTA-TAGTCACTCATGCCTTTGAAAGCCTAATTACTTGCTTTAAGTGGT
121 GACAAGAAAATTCCATTTATTA-TCACTCATGCCTTCGAAAGCCTAATTACTTGCTTTAAGTGGT
* *
129334 TTATAATCTTATAAATGATTTTTGAT-TAAA-TTTT-TTTTTTAGTTAAAATATACTATAATTGG
185 TTATAATCTTATAAATGATTTTTGATAAAAAGTTTTCTTTTTTAGTTAAAACATACTATAATTGG
* * *
129396 ATGTTTGCATTAGGGAACGTTAAGCAAAAGCCATCCATTGACAAGAAA-AATCCATTTGTAGTCA
250 ATGTTTGCATTAGGGAACGTTAAACAAAAGCCATCCATTAACAA-AAATAATCCATTTATAGTCA
* *
129460 GCCATTCCTTTGAAAGCCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATTATTTAAAA
314 ACCATTCCTTTGAAAGCCTTGTTACTTACTTTAAATGGTTCTATAATCTTATAAATTATTTAAAA
* * * *
129525 TCAAAATCTTCATCATTTTTAGTTTAAATTAATTATAATTGGATGTATGCATCAAGAAACATGAA
379 TCAAAATCTTCATAATTTTTAGTTAAAATTAATTATAACTAGATGTATGCATCAAGAAACATGAA
129590 GTGAATCGCATCCATTGACAAA
444 GTGAATCGCATCCATTGACAAA
129612 AATGCCTTAT
Statistics
Matches: 404, Mismatches: 54, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
508 216 0.53
509 8 0.02
511 3 0.01
512 2 0.00
513 135 0.33
514 40 0.10
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.38
Consensus pattern (502 bp):
CTTTAAGTGGTTTTACAATATTATAAATGATTTTAAATTCAATATTTTTTTCATTTTTGGTTAAA
AAAAGTCATAATTGGATGTGTTGCATCAGGAAAGGTGAAGCGCAAGCCATCCATTGACAAGAAAA
TTCCATTTATTATCACTCATGCCTTCGAAAGCCTAATTACTTGCTTTAAGTGGTTTATAATCTTA
TAAATGATTTTTGATAAAAAGTTTTCTTTTTTAGTTAAAACATACTATAATTGGATGTTTGCATT
AGGGAACGTTAAACAAAAGCCATCCATTAACAAAAATAATCCATTTATAGTCAACCATTCCTTTG
AAAGCCTTGTTACTTACTTTAAATGGTTCTATAATCTTATAAATTATTTAAAATCAAAATCTTCA
TAATTTTTAGTTAAAATTAATTATAACTAGATGTATGCATCAAGAAACATGAAGTGAATCGCATC
CATTGACAAACAAAGTCCATTTATAGTCACTCATGCCTCCAAAAGGC
Found at i:131206 original size:170 final size:167
Alignment explanation
Indices: 130478--134031 Score: 831
Period size: 171 Copynumber: 20.7 Consensus size: 167
130468 ACCCTTGTTA
* * * *
130478 CTTATAAATGATTTTAAATCAAAATCTTTTTCATTTTTGATTAAAATTGATCATAATTGGATATT
1 CTTATAAATAATTTTAAATCAAAAT-TTTTT-ATTTTTGGTTAAAATTAATCATAATTGG-TGTT
* * * * *
130543 TGCATTAAGAAA-AGTGAAGC-GAATGGCATCCATTGACAAGAAAAGTCCATTTATAGTAACTCA
63 TGCATTAGGAAACA-TGAAGCAG-ATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTTA
* * * *
130606 TACTTACAAAAGCCTTGTTACTCACTTTAAGTGGTTTAATAAT
126 TGCTAACGAAAGCCTTGTTACTCACTTTAA-TGGTTTTATAAT
* * * * * * * *
130649 CTTTTAAATAATTTTTAATCAAAATTTATTCATTTCTAGTTAAAA-CATATTATAATTGGATGCT
1 CTTATAAATAATTTTAAATCAAAATTT-TTTATTTTTGGTTAAAATTA-ATCATAATTGG-TGTT
* *********** * * * *
130713 TGCATCAANNNNNNNNNNG-TGAAAGTCATCCATTGACAAGAAAAGTAC-ATTTATTGTCACTTA
63 TGCATTAGGAAACATGAAGCAG-ATGCCATCCATTGACAAGAAAAGT-CTATTTATAGTCACTTA
* ** **
130776 TTCTTTCGAAAGCCTTGTTACTTGCTTTAAATGGTTTTATAAT
126 TGCTAACGAAAGCCTTGTTACTCACTTT-AATGGTTTTATAAT
* * * ********* * *
130819 CTTATCAATGACTTTAAATCANNNNNNNNNNCATTTTTAGTTAAAATCAATCATAATTGGTGGTT
1 CTTATAAATAATTTTAAATCA--AAATTTTTTATTTTTGGTTAAAATTAATCATAATTGGT-GTT
* * ** * *
130884 TGCGTTAGGAAACGTGAAGTGGATGTCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTTATG
63 TGCATTAGGAAACATGAAGCAGATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTTATG
* * ** * *
130949 ATATCGAAAGCCTTGTTTGTCGCTTTAGATGGATTTATAAT
128 CTAACGAAAGCCTTGTTACTCACTTTA-ATGGTTTTATAAT
* * ** * * *
130990 CTTATAAATAATTTTAAGTCAGAATCGTTTCCATTTTTGATTAAAATTAGTAATAATTAGGTGTT
1 CTTATAAATAATTTTAAATCAAAAT--TTTTTATTTTTGGTTAAAATTAATCATAATT-GGTGTT
* * * *
131055 TGCATTAGGAAACTTGAAGCAGATGCCATCCATTGACAAGAATAGTCCATTTATAGTCACTTGTG
63 TGCATTAGGAAACATGAAGCAGATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTTATG
* *
131120 CTAACG-AACCCTTGTTACTCATTTTAATTGGTTTTATAAT
128 CTAACGAAAGCCTTGTTACTCACTTTAA-TGGTTTTATAAT
* *
131160 CTTATAAATAATTTTAAATCAAAATCCTTTTTATTTTTGGTTAAAATTGATCATAATTGGATATT
1 CTTATAAATAATTTTAAATCAAAAT--TTTTTATTTTTGGTTAAAATTAATCATAATTGG-TGTT
* * * * * * * *
131225 TACATT-GGAAATCATAAAGC-GAATAG-AATCCATTG---ATAACAGTCTATTTGTAGTAACTC
63 TGCATTAGGAAA-CATGAAGCAG-AT-GCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTT
** * *
131284 ACACCTAA-GAAAGCCTTGTTACTTACTTTAAGTGGTTTAATAAT
125 A-TGCTAACGAAAGCCTTGTTACTCACTTTAA-TGGTTTTATAAT
* * * *
131328 CTTATAAATGATTTTAAATCAAAATTTTTTTATTTTTGGTTAAAA-TATATTATAATTCGATATT
1 CTTATAAATAATTTTAAATCAAAA-TTTTTTATTTTTGGTTAAAATTA-ATCATAATT-GGTGTT
* * * * * *
131392 TTCATTCA-GAAATATGAAG-TGAAAGCCATCCATTGACAAGAAAAGTATATTTATAGTCACTCA
63 TGCATT-AGGAAACATGAAGCAG-ATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTTA
* ** * * *
131455 TTCTTTCGAAAACCTTGTTAC-CTGCTTTAAATAGTTTTATAAT
126 TGCTAACGAAAGCCTTGTTACTC-ACTTT-AATGGTTTTATAAT
* * ** *
131498 GTTATCAACGATTTTAAATCAAAAGTTTTTTCATTTTTGGTTAAAATCAATCATAATTGGTGGTT
1 CTTATAAATAATTTTAAATCAAAA-TTTTTT-ATTTTTGGTTAAAATTAATCATAATTGGT-GTT
* * * * ** *
131563 TGAATCTTGAAAACATGAAGTAGATATCATCCATTGAGAAGAAAAGTCTATTTATAGTCACTTAT
63 TGCAT-TAGGAAACATGAAGCAGATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTTAT
* ** *** ** *
131628 GAC-ATCGAAAGCCTTGTTTGTTGGTTTAAATGAATTTATGAT
127 G-CTAACGAAAGCCTTGTTACTCACTTT-AATGGTTTTATAAT
* ** ** ** * * * *
131670 CTTATAAATGATTTTAAATCGGAATCATTTCCATTTTTTATTAAAATCAGA-AAAAATTGGGTCT
1 CTTATAAATAATTTTAAATCAAAAT--TTTTTATTTTTGGTTAAAATTA-ATCATAATT-GGTGT
* * * * * * * * *
131734 TTTCATTGGGCAACGTGAAG-TGCATGCCATCCATTTATAGGAAAAGTCCATTTATAGTCA-TTA
62 TTGCATTAGGAAACATGAAGCAG-ATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTT-
* ** * *
131797 ATGCCT-TCGAAAGCCTTGTTACTTGCTTTAAGTAGTTTGT-TAAG
125 ATG-CTAACGAAAGCCTTGTTACTCACTTTAA-TGGTTT-TATAAT
* * * * * * * * ** *
131841 GTCATAAATGATTATCAATCTAAATTTTTTTCATTTCTAGTTAAAACAAATCATAATTGGATATT
1 CTTATAAATAATTTTAAATC-AAAATTTTTT-ATTTTTGGTTAAAATTAATCATAATTGG-TGTT
** * * ** * * *
131906 CACGTAAAAAAACATGAAGCAAAAGCCATCCATTGATATCCATTGATAAGAAAAGTCCATTTATA
63 TGCATTAGGAAACATGAAGCAGATGCCATCCATTG--A--C------AAGAAAAGTCTATTTATA
* ** ** * *
131971 GTCACTCATGCTTTCGAAAGCCTTGTTACTCACTTTAAATAATTTAATACT
118 GTCACTTATGCTAACGAAAGCCTTGTTACTCACTTT-AATGGTTTTATAAT
* * ** * * * ** *
132022 CCTAGAAATGTTTTTAGACCAAAATATTTTATTCTTGTTGGTTAATAAAAATATCATAATTTGAT
1 CTTATAAATAATTTTAAATCAAAATTTTTTA-T-TT-TTGGTTAA-AATTA-ATCATAA-TTGGT
* * * * * * *
132087 GTTTGCATTA-AAAAGCGTGAAG-TGACTGCCATCCATTGAGAAGAAAAGCCCA-CT-TA-TCAC
60 GTTTGCATTAGGAAA-CATGAAGCAGA-TGCCATCCATTGACAAGAAAAGTCTATTTATAGTCAC
** * * * * * * *
132147 CCATGCCATCGAAGGCCATGCTATTCACTTTAAATGTTTTTATAAT
123 TTATGCTAACGAAAGCCTTGTTACTCACTTT-AATGGTTTTATAAT
* * * ** ** * * * * ** **
132193 CTTATAAATGATCTTAAATCAAAGTCCTTT-TCGTT--TT-CAATCAATTAT-TTTTAT-TTTTA
1 CTTATAAATAATTTTAAATCAAAATTTTTTATTTTTGGTTAAAATTAATCATAATTGGTGTTTGC
** ** * ** * * * *
132252 ATTAAAATATATCAT-AATTAGATG-CTTTTATTGGGA-AACATGAAG-C-A--GA-AGCCA-TC
66 ATTAGGA-A-A-CATGAAGCAGATGCCATCCATT--GACAAGA-AAAGTCTATTTATAGTCACT-
* * * * * * *
132308 CATTGATAA-AAAAGTGCATTACTAGTTACTCATGCTTTTGAACGCCTTTT-TAGT
124 TA-TGCTAACGAAA--GC----CTTGTTACTCA--C-TTT-AATG-GTTTTATAAT
* * * *
132362 CACTT-TACATGATTTTATAATCATATCAATGATATTAAATTAAAAGATTTTT--TT-ATATTGA
1 --CTTATAAATAATTTTA-AATCA-A--AAT--T-TT---TT-----ATTTTTGGTTAAAATTAA
* * * *
132423 TTATAATTGGATGTTTGCATCAAGAAACATGAAGCAGATGCCATCCATT-ATCAAGAAGAGTCTA
49 TCATAATTGG-TGTTTGCATTAGGAAACATGAAGCAGATGCCATCCATTGA-CAAGAAAAGTCTA
* * * * *** * * * *
132487 TTTATAGTGAATAATGCCATTAAAAGCCTTATTACTCGCTTCAAATGATTTTATAAT
112 TTTATAGTCACTTATGCTAACGAAAGCCTTGTTACTCACTT-TAATGGTTTTATAAT
* *
132544 CTTATAAATAATTTTAGATCAAAATCTTTTTCATTTTTGGTTAAAA-TAATCATATTTGGATGTT
1 CTTATAAATAATTTTAAATCAAAAT-TTTTT-ATTTTTGGTTAAAATTAATCATAATTGG-TGTT
* * * * *
132608 TGCATT-GGAAAACACGAAGCAAATGTCATCCATTGATAAGAAAAGTGC-ATTTATAGTCACTCA
63 TGCATTAGG-AAACATGAAGCAGATGCCATCCATTGACAAGAAAAGT-CTATTTATAGTCACTTA
** * *
132671 TG-TGTTC-AAAGCCTTGTTACTCACTTTAAGTAGTTTTAAAAT
126 TGCT-AACGAAAGCCTTGTTACTCACTTTAA-TGGTTTTATAAT
* ** * * *
132713 CTTATAAATGATTTTAAATTCAATGTTTTTTTCTATTTTAGTTAAAGCA-T-GTCATAATTGGAT
1 CTTATAAATAATTTTAAA-TCAA-AATTTTTTAT-TTTTGGTTAAA--ATTAATCATAATTGG-T
* * * * * * * *
132776 G-TTGCATCAGGAAACGTGAAGC-GAAAGCCATCCATTGATAAGAAAATTTTATATATAGCCA-T
60 GTTTGCATTAGGAAACATGAAGCAG-ATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACT
* * * ********** *
132838 TCATGGCT-TCGACAGCCTAGTCNNNNNNNNNNAATGATTTTATAAT
124 T-AT-GCTAACGAAAGCCTTGT-TACTCACTTTAATGGTTTTATAAT
* * ** * * *
132884 TTTATAAATGATTTTCGATC-AATTTTTTTCATTTTTGGTTAAAA-TAGATAATAATTGGATGAT
1 CTTATAAATAATTTTAAATCAAAATTTTTT-ATTTTTGGTTAAAATTA-ATCATAATTGG-TGTT
** * * * * * * * * * *
132947 TGCATTAGGAAATGTGAAGTAAAAGCCATCCATTGATAACAAAATTCCATTTATAGTTAGTCATT
63 TGCATTAGGAAACATGAAGCAGATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTTA-T
* ** * * **
133012 CCT-TTGAAAGCCTTGTCAATTGCTTTAAATGGTTTTATAAT
127 GCTAACGAAAGCCTTGTTACTCACTTT-AATGGTTTTATAAT
* * * * * * ** *
133053 CATGTAAATTATTTTAAATCAAAATCTTTATCATTTTTGGTTAAAATTAATCGTAGTTAAATATT
1 CTTATAAATAATTTTAAATCAAAAT-TTT-TTATTTTTGGTTAAAATTAATCATAATT-GGTGTT
* * * * *
133118 TGCATCAGGAAACATGAAGCCA-AT-CCTTTCCATTGACAAAAAAAGTCCATTTATAGTCACTCA
63 TGCATTAGGAAACATGAAG-CAGATGCC-ATCCATTGACAAGAAAAGTCTATTTATAGTCACTTA
** * * *
133181 TGAAAATG-AACCCTTGTTACTCACTTTAATTGATTTTATAAT
126 TGCTAACGAAAGCCTTGTTACTCACTTTAA-TGGTTTTATAAT
*** * * * **
133223 CTTATAAATGGCTTTAAATTGAAATCTTTTTTCATTTTTGGTTAAAATTGATTGTAATTGGATGT
1 CTTATAAATAATTTTAAA-TCAAA-ATTTTTT-ATTTTTGGTTAAAATTAATCATAATTGG-TGT
* * * * * * * * *
133288 TTGCATTACGAAACATAAAGC-GAATGTCATCCATTAATAAGAAAAGTCCATTTATAATAACTCA
62 TTGCATTAGGAAACATGAAGCAG-ATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTTA
* * *** *
133352 TCCTTACGAAAGCCTTGTTACTTGGTTTAAGTGGTTTAATAAT
126 TGCTAACGAAAGCCTTGTTACTCACTTTAA-TGGTTTTATAAT
* * ********* *
133395 CTTATAAATGATTTTCAATCAAAATTCNNNNNNNNNNTAGTTAAACA-T-ATCATAATTGGATGT
1 CTTATAAATAATTTTAAATCAAAATT--TTTTATTTTTGGTTAAA-ATTAATCATAATTGG-TGT
* * * * ** * * *
133458 TTGCA-TCGAAAACGTAAAGTGGAAGCCATCCATTGATAAGAAAAGTAC-ATTTATAGTCACTCA
62 TTGCATTAGGAAACATGAAGCAGATGCCATCCATTGACAAGAAAAGT-CTATTTATAGTCACTTA
* ** * ** *
133521 TACTTTCGAAATCCTTGTTACTTGCTTTAAATGGATTTATAAT
126 TGCTAACGAAAGCCTTGTTACTCACTTT-AATGGTTTTATAAT
** * ******** * * **
133564 CTTACCAATGATTTTAAATNNNNNNNNNNTTTGTTTTTGATTAAAATCGATCATAATTGGTGGTT
1 CTTATAAATAATTTTAAAT--CAAAATTTTTTATTTTTGGTTAAAATTAATCATAATTGGT-GTT
* ** * * * * ** *
133629 TGCATCAGGAAACATCTAGCAGATACCATCCATTGATAACAAAA-TCCATTTATAGGAACTCATG
63 TGCATTAGGAAACATGAAGCAGATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTTATG
* * * *********
133693 CTATCGAAAGCATTCTTACTCGA-TTTANNNNNNNNNNTAAT
128 CTAACGAAAGCCTTGTTACTC-ACTTTA-ATGGTTTTATAAT
* * * ** *
133734 CTTATAAATGATTTTTAATCAAAATCTTTTCTGTTTTTGGTTAAAACCAGTCATAATTGGATGTT
1 CTTATAAATAATTTTAAATCAAAAT-TTTT-TATTTTTGGTTAAAATTAATCATAATTGG-TGTT
* * * * * * * * *
133799 TACATTAGGAAACGTTAAGCGGATGCCATCCATTGACGAA-AAAAATCCAATTATTGTCACTGAT
63 TGCATTAGGAAACATGAAGCAGATGCCATCCATTGAC-AAGAAAAGTCTATTTATAGTCACTTAT
* * * *
133863 GCCT-TCGAACGCTTTGTTACTCACTTTAAGTGGTTTAATAAT
127 G-CTAACGAAAGCCTTGTTACTCACTTTAA-TGGTTTTATAAT
* * * ** * *
133905 TTTACAAATAATTTTCAATCAATTTTTTTTTTCATTTTTTGTTAAAA-CATATCATAATTGGATG
1 CTTATAAATAATTTTAAATCAA--AATTTTTT-ATTTTTGGTTAAAATTA-ATCATAATTGG-TG
* * * * * *
133969 ATTGCATCA-GAAACCATGAAACGAGA-GCCATCCATTCACAAGAAAAGTCCATATATAGTCACT
61 TTTGCATTAGGAAA-CATGAAGC-AGATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACT
134032 CATGTCTTTG
Statistics
Matches: 2475, Mismatches: 696, Indels: 423
0.69 0.19 0.12
Matches are distributed among these distances:
159 8 0.00
160 18 0.01
161 12 0.00
162 16 0.01
163 3 0.00
165 2 0.00
166 11 0.00
167 73 0.03
168 100 0.04
169 266 0.11
170 666 0.27
171 775 0.31
172 258 0.10
173 14 0.01
174 13 0.01
175 2 0.00
176 1 0.00
177 4 0.00
179 2 0.00
180 20 0.01
181 79 0.03
182 18 0.01
183 10 0.00
184 30 0.01
185 12 0.00
186 17 0.01
187 14 0.01
188 8 0.00
189 10 0.00
190 4 0.00
191 8 0.00
192 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.37
Consensus pattern (167 bp):
CTTATAAATAATTTTAAATCAAAATTTTTTATTTTTGGTTAAAATTAATCATAATTGGTGTTTGC
ATTAGGAAACATGAAGCAGATGCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTTATGCTA
ACGAAAGCCTTGTTACTCACTTTAATGGTTTTATAAT
Found at i:131346 original size:168 final size:166
Alignment explanation
Indices: 131129--131557 Score: 450
Period size: 170 Copynumber: 2.5 Consensus size: 166
131119 GCTAACGAAC
* * * *
131129 CCTTGTTACTCATTTTAATTGGTTTTATAATCTTATAAATAATTTTAAATCAAAATCCTTTTTAT
1 CCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAAT--TTTTTAT
*
131194 TTTTGGTTAAAATTGATCATAATTGGATATTTACATT-GGAAATCATAAAGCGAATAG-AATCCA
64 TTTTGGTTAAAATT-ATCATAATTGGATATTTACATTCAGAAAT-ATAAAGCGAA-AGCAATCCA
* * * * *
131257 TTG-ATAACAGTCTATTTGTAGTAACTCACACCTAAGAAAG
126 TTGAAGAAAAGTATATTTATAGTAACTCACACCTAAGAAAA
* *
131297 CCTTGTTACTTACTTTAAGTGGTTTAATAATCTTATAAATGATTTTAAATCAAAATTTTTTTATT
1 CCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAA-TTTTTTATT
* * * * * *
131362 TTTGGTTAAAATATATTATAATTCGATATTTTCATTCAGAAATATGAAGTGAAAGCCATCCATTG
65 TTTGGTTAAAAT-TATCATAATTGGATATTTACATTCAGAAATATAAAGCGAAAGCAATCCATTG
* ** * **
131427 ACAAGAAAAGTATATTTATAGTCACTCATTCTTTCGAAAA
129 --AAGAAAAGTATATTTATAGTAACTCACACCTAAGAAAA
* * * * * *
131467 CCTTGTTACCTGCTTTAAATAGTTTTATAATGTTATCAACGATTTTAAATCAAAAGTTTTTTCAT
1 CCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAA-TTTTTT-AT
*
131532 TTTTGGTTAAAATCAATCATAATTGG
64 TTTTGGTTAAAAT-TATCATAATTGG
131558 TGGTTTGAAT
Statistics
Matches: 217, Mismatches: 36, Indels: 13
0.82 0.14 0.05
Matches are distributed among these distances:
166 2 0.01
167 55 0.25
168 56 0.26
169 1 0.00
170 79 0.36
171 24 0.11
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (166 bp):
CCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATTTTTTATTT
TTGGTTAAAATTATCATAATTGGATATTTACATTCAGAAATATAAAGCGAAAGCAATCCATTGAA
GAAAAGTATATTTATAGTAACTCACACCTAAGAAAA
Found at i:133050 original size:169 final size:168
Alignment explanation
Indices: 132226--134044 Score: 616
Period size: 170 Copynumber: 10.7 Consensus size: 168
132216 GTCCTTTTCG
* * * ** * * ** *
132226 TTTTCAATCAATTATTTTT-ATTTTTAATTAAAATATATCATAATTAGATGCTTTTATTGGGAAA
1 TTTTAAATCAAATCTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATG-TTGCATTAGGAAA
* * * * * * *
132290 CATGAAGCAGAAGCCATCCATTGATAA-AAAAGTGCA-TTACTAGTTACTCATGCTTTTGAACGC
65 CGTGAAGCAAAAGCCATCCATTGATAAGAAAATTCCATTTA-TAGTCACTCATTC-TTTGAAAGC
* * * * * * *
132353 CTTTTTAGTCACTTTACATGATTTTATAATCATATCAATGA
128 CTTGTCAATCGCTTTAAATGATTTTATAATCTTATAAATGA
* * ** * * * * *
132394 TATTAAATTAAA------AGATTTTT--TT-ATATTGATTATAATTGGATGTTTGCATCAAGAAA
1 TTTTAAATCAAATCTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATG-TTGCATTAGGAAA
* * * * * * * * * * * *
132450 CATGAAGCAGATGCCATCCATT-ATCAAGAAGAGTCTATTTATAGTGAATAATGCCATTAAAAGC
65 CGTGAAGCAAAAGCCATCCATTGAT-AAGAAAATTCCATTTATAGTCACTCAT-TCTTTGAAAGC
* * * * *
132514 CTTATTACTCGCTTCAAATGATTTTATAATCTTATAAATAA
128 CTTGTCAATCGCTTTAAATGATTTTATAATCTTATAAATGA
* *
132555 TTTTAGATCAAAATCTTTTTCATTTTTGGTTAAAATA-ATCATATTTGGATGTTTGCATT-GGAA
1 TTTTAAATC-AAATCTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATG-TTGCATTAGG-A
** * * * * * *
132618 AACACGAAGCAAATGTCATCCATTGATAAGAAAAGTGCATTTATAGTCACTCATGT-GTTCAAAG
63 AACGTGAAGCAAAAGCCATCCATTGATAAGAAAATTCCATTTATAGTCACTCAT-TCTTTGAAAG
* * * * *
132682 CCTTGTTACTCACTTTAAGT-AGTTTTAAAATCTTATAAATGA
127 CCTTGTCAATCGCTTTAAATGA-TTTTATAATCTTATAAATGA
* * * *
132724 TTTTAAATTCAATGTTTTTTTC-TATTTTAGTTAAAGCAT-G-TCATAATTGGATGTTGCATCAG
1 TTTTAAA-TCAA-ATCTTTTTCAT-TTTTGGTTAAA--ATAGATCATAATTGGATGTTGCATTAG
* ** * * * * * *
132786 GAAACGTGAAGCGAAAGCCATCCATTGATAAGAAAATTTTATATATAGCCATTCATGGCTTCGAC
61 GAAACGTGAAGCAAAAGCCATCCATTGATAAGAAAATTCCATTTATAGTCACTCAT-TCTTTGAA
* ********** *
132851 AGCCTAGTCNNNNNNNNNNAATGATTTTATAATTTTATAAATGA
125 AGCCTTGTCAATCGCTTTAAATGATTTTATAATCTTATAAATGA
** * *
132895 TTTTCGATC-AATTTTTTTCATTTTTGGTTAAAATAGATAATAATTGGATGATTGCATTAGGAAA
1 TTTTAAATCAAATCTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATG-TTGCATTAGGAAA
* * * * *
132959 TGTGAAGTAAAAGCCATCCATTGATAACAAAATTCCATTTATAGTTAGTCATTCCTTTGAAAGCC
65 CGTGAAGCAAAAGCCATCCATTGATAAGAAAATTCCATTTATAGTCACTCATT-CTTTGAAAGCC
* * * * *
133024 TTGTCAATTGCTTTAAATGGTTTTATAATCATGTAAATTA
129 TTGTCAATCGCTTTAAATGATTTTATAATCTTATAAATGA
* * * ** * *
133064 TTTTAAATCAAAATCTTTATCATTTTTGGTTAAAATTA-ATCGTAGTTAAATATTTGCATCAGGA
1 TTTTAAATC-AAATCTTTTTCATTTTTGGTTAAAA-TAGATCATAATTGGAT-GTTGCATTAGGA
* * * * * * * ****
133128 AACATGAAGC-CAATCCTTTCCATTGACAAAAAAAGTCCATTTATAGTCACTCATGAAAATG-AA
63 AACGTGAAGCAAAAGCC-ATCCATTGATAAGAAAATTCCATTTATAGTCACTCAT-TCTTTGAAA
* * * * * *
133191 CCCTTGTTACTCACTTTAATTGATTTTATAATCTTATAAATGG
126 GCCTTGTCAATCGCTTTAAATGATTTTATAATCTTATAAATGA
* * * ** *
133234 CTTTAAATTGAAATCTTTTTTCATTTTTGGTTAAAATTGATTGTAATTGGATGTTTGCATTACGA
1 TTTTAAA-TCAAATC-TTTTTCATTTTTGGTTAAAATAGATCATAATTGGATG-TTGCATTAGGA
* * * * * * * * * * *
133299 AACATAAAGCGAATGTCATCCATTAATAAGAAAAGTCCATTTATAATAACTCATCCTTACGAAAG
63 AACGTGAAGCAAAAGCCATCCATTGATAAGAAAATTCCATTTATAGTCACTCATTCTT-TGAAAG
* * * * * * *
133364 CCTTGTTACTTGGTTTAAGTGGTTTAATAATCTTATAAATGA
127 CCTTGTCAATCGCTTTAAATGATTTTATAATCTTATAAATGA
* ********** * * *
133406 TTTTCAATCAAAAT-TCNNNNNNNNNNTAGTTAAACAT--ATCATAATTGGATGTTTGCA-TCGA
1 TTTTAAATC-AAATCT-TTTTCATTTTTGGTTAAA-ATAGATCATAATTGGATG-TTGCATTAGG
* *** * * *
133467 AAACGTAAAGTGGAAGCCATCCATTGATAAGAAAAGTACATTTATAGTCACTCATACTTTCGAAA
62 AAACGTGAAGCAAAAGCCATCCATTGATAAGAAAATTCCATTTATAGTCACTCATTCTTT-GAAA
* * * * **
133532 TCCTTGTTACTTGCTTTAAATGGA-TTTATAATCTTACCAATGA
126 GCCTTGTCAATCGCTTTAAAT-GATTTTATAATCTTATAAATGA
******** * * * *
133575 TTTTAAATNNNNNNNNNNTTT-GTTTTTGATTAAAATCGATCATAATTGG-TGGTTTGCATCAGG
1 TTTTAAAT--CAAATCTTTTTCATTTTTGGTTAAAATAGATCATAATTGGAT-G-TTGCATTAGG
* ** * * ** * *
133638 AAACATCTAGCAGATA-CCATCCATTGATAACAAAA-TCCATTTATAGGAACTCATGCTATCGAA
62 AAACGTGAAGCA-AAAGCCATCCATTGATAAGAAAATTCCATTTATAGTCACTCATTCT-TTGAA
* * * * * **********
133701 AGCATTCTTACTCGATTTANNNNNNNNNNTAATCTTATAAATGA
125 AGCCTTGTCAATCGCTTTAAATGATTTTATAATCTTATAAATGA
* * * *
133745 TTTTTAATCAAAATC-TTTTCTGTTTTTGGTTAAAACCAG-TCATAATTGGATGTTTACATTAGG
1 TTTTAAATC-AAATCTTTTTC-ATTTTTGGTTAAAA-TAGATCATAATTGGATG-TTGCATTAGG
* ** * * * * * * * *
133808 AAACGTTAAGCGGATGCCATCCATTGACGAA-AAAAATCCAATTATTGTCACTGATGCCTTCGAA
62 AAACGTGAAGCAAAAGCCATCCATTGA-TAAGAAAATTCCATTTATAGTCACTCAT-TCTTTGAA
* * * * * * * * * * *
133872 CGCTTTGTTACTCACTTTAAGTGGTTTAATAATTTTACAAATAA
125 AGCCTTGTCAATCGCTTTAAATGATTTTATAATCTTATAAATGA
* * * * * * *
133916 TTTTCAATCAATTTTTTTTTTCATTTTTTGTTAAAACATATCATAATTGGATGATTGCATCA-GA
1 TTTTAAATCAA--ATCTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATG-TTGCATTAGGA
* * * * * * * *
133980 AACCATGAAACGAGAGCCATCCATTCACAAGAAAAGTCCATATATAGTCACTCATGTCTTTGAAA
63 AA-CGTGAAGCAAAAGCCATCCATTGATAAGAAAATTCCATTTATAGTCACTCAT-TCTTTGAAA
134045 TCTTTGTTAC
Statistics
Matches: 1212, Mismatches: 364, Indels: 146
0.70 0.21 0.08
Matches are distributed among these distances:
159 2 0.00
160 46 0.04
161 61 0.05
162 7 0.01
163 6 0.00
166 2 0.00
167 1 0.00
168 50 0.04
169 248 0.20
170 339 0.28
171 312 0.26
172 133 0.11
173 5 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.37
Consensus pattern (168 bp):
TTTTAAATCAAATCTTTTTCATTTTTGGTTAAAATAGATCATAATTGGATGTTGCATTAGGAAAC
GTGAAGCAAAAGCCATCCATTGATAAGAAAATTCCATTTATAGTCACTCATTCTTTGAAAGCCTT
GTCAATCGCTTTAAATGATTTTATAATCTTATAAATGA
Found at i:136088 original size:98 final size:98
Alignment explanation
Indices: 135909--136090 Score: 231
Period size: 98 Copynumber: 1.9 Consensus size: 98
135899 TCAATAACTC
* * * *
135909 TAAATCAAAATCTCTTTCATTTTTAGTTAAAATCAATCATAATTGGTGGTTTGCGTCAAGAAACG
1 TAAATCAAAATATCTTTCATTTTTAGTAAAAATCAATCATAATTGGTGGTTTGCATCAAGAAACA
* * **
135974 TGAAGTGGATGTCATCCATCTTACCAATGATTT
66 TCAAGCGGATACCATCCATCTTACCAATGATTT
* * * * *
136007 TAAATCAAAATATTTTTTATTTTT-GATAAAAATCGATCATAATTGGTGGTTTGCATCAGGAGAC
1 TAAATCAAAATATCTTTCATTTTTAG-TAAAAATCAATCATAATTGGTGGTTTGCATCAAGAAAC
136071 ATCAAGCGGATACCATCCAT
65 ATCAAGCGGATACCATCCAT
136091 TGATAACAAA
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
97 1 0.01
98 69 0.99
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (98 bp):
TAAATCAAAATATCTTTCATTTTTAGTAAAAATCAATCATAATTGGTGGTTTGCATCAAGAAACA
TCAAGCGGATACCATCCATCTTACCAATGATTT
Found at i:138320 original size:19 final size:19
Alignment explanation
Indices: 138296--138338 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
138286 AATCATTCTT
138296 TCATCTTACATCGAACCTC
1 TCATCTTACATCGAACCTC
* * *
138315 TCATCTTGCATTGAACCTT
1 TCATCTTACATCGAACCTC
138334 TCATC
1 TCATC
138339 ATAGACCTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.37
Consensus pattern (19 bp):
TCATCTTACATCGAACCTC
Found at i:143623 original size:168 final size:168
Alignment explanation
Indices: 143397--143851 Score: 449
Period size: 169 Copynumber: 2.7 Consensus size: 168
143387 NNNNNNNNNN
* *
143397 CTTCACATTTCCTAATGCAAGCATCCAATTATTATCTATTTTAACCACAAAT-GAAAAAA-ATTG
1 CTTCACGTTTCCTAATGCAA-CATCCAATTATGATC-ATTTTAACCA-AAATAGAAAAAACATTG
* * * * * * * * * *
143460 ATCGAAAATTATTTACAAAATTATAAAATC-ATTTAAGGTGAGTGACCAGGCTGTCGAAGC-CAT
63 ATCTAAAATAATTTATAAGATTATAAAATCTACTTAAAGCGAGTAACAAGGCT-TC-AAACACAT
* * *
143523 GAGTGGCTATATATAAAAGTTTCTTATCAATGGATGGCTTTTG
126 GAGTGACTATAAATAAAAGTTTCTTATCAATGGATGGCATTTG
*
143566 CTTCACGTTTCCTGATGCAACATCCAATTATGA-CATGCTTTAACCAAAATAGAAAAAACATTGA
1 CTTCACGTTTCCTAATGCAACATCCAATTATGATCAT--TTTAACCAAAATAGAAAAAACATTG-
*
143630 ATTTAAAATAATTTATAAGATTATAAAA-CTACTTAAAGCGAGTAACAAGGCTTCAAACACATGA
63 ATCTAAAATAATTTATAAGATTATAAAATCTACTTAAAGCGAGTAACAAGGCTTCAAACACATGA
***** *
143694 GTGACTATAAATGCGCTTTTCTTGTCAATGGATGGCATTTG
128 GTGACTATAAATAAAAGTTTCTTATCAATGGATGGCATTTG
* * * * * **
143735 CTTCATGTTTTCTAATGCAAACTTCCAAATATGATTATTTTAACCAAAA-ATGAAAAAGATTTTG
1 CTTCACGTTTCCTAATGC-AACATCCAATTATGATCATTTTAACCAAAATA-GAAAAA-ACATTG
* * * *
143799 ATCTAAAATCATTTATAAGATTATAAAATCT-TTTGAGGCGAGTAACAAGGCTT
63 ATCTAAAATAATTTATAAGATTATAAAATCTACTTAAAGCGAGTAACAAGGCTT
143852 TTAATGGCAT
Statistics
Matches: 238, Mismatches: 36, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
166 2 0.01
167 5 0.02
168 31 0.13
169 139 0.58
170 59 0.25
171 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (168 bp):
CTTCACGTTTCCTAATGCAACATCCAATTATGATCATTTTAACCAAAATAGAAAAAACATTGATC
TAAAATAATTTATAAGATTATAAAATCTACTTAAAGCGAGTAACAAGGCTTCAAACACATGAGTG
ACTATAAATAAAAGTTTCTTATCAATGGATGGCATTTG
Found at i:143737 original size:169 final size:169
Alignment explanation
Indices: 142954--143935 Score: 578
Period size: 170 Copynumber: 5.8 Consensus size: 169
142944 ATTTTGATTG
* * * * * ** *
142954 AAAATCATTTATAAGATTATTAAACCACTTAAAGCGAGTAACAAGGCTTTCGTAA-GGATGAGTT
1 AAAATAATTTATAAGATTATAAAATCTCTTAAAGCGAGTAACAAGGCTTTC-AAACACATGAGTG
* * * * * *
143018 ACTATAAATAGACTTTTCTTGTTAATGGATGACATTCGCTTTATGTTTTCTAATGCAAACATCCA
65 ACTATAAATGGACTTTTCTTGTCAATGGATGGCATTTGCTTCATG-TTTCTGATGCAAACATCCA
* * * *
143083 ATTATGATCAATTTTAACCAAAAATAAAAAAGA-TTTCAATTT
129 ATTATGATC-ATTTTAACCAAAAATGAAAAAGACATT-GATCT
*** * ** * * ****
143125 AAAGCCATTTATAATATTATAAAATCAATTAAAGTGAGTAACAAGG-GTTCATTGGCATGAGTGA
1 AAAATAATTTATAAGATTATAAAATCTCTTAAAGCGAGTAACAAGGCTTTCAAACACATGAGTGA
* * * * * * **
143189 CTATATATGGACTTTTTTTATCAATGGAAAGG-ATTCGCTTCATGTTTCCTGATGCAAATATTTA
66 CTATAAATGGACTTTTCTTGTCAATGG-ATGGCATTTGCTTCATGTTT-CTGATGCAAACATCCA
* * * ** *
143253 ACTATGATTAATTTTAACCAAAAATGATAAAGATTTTGATTT
129 ATTATGA-TCATTTTAACCAAAAATGAAAAAGACATTGATCT
********** * * * * *
143295 AAAATNNNNNNNNNNATTATAAAACCAT-TTAAAGCAATTAACAAGGCTTTCAAA-AGAATGACT
1 AAAATAATTTATAAGATTATAAAATC-TCTTAAAGCGAGTAACAAGGCTTTCAAACA-CATGAGT
* * * * ********** ** * *
143358 AACTATAAATGGAATTTTGTTATCAATGGNNNNNNNNNNCTTCACATTTCCTAATGCAAGCATCC
64 GACTATAAATGGACTTTTCTTGTCAATGGATGGCATTTGCTTCATGTTT-CTGATGCAAACATCC
* * *
143423 AATTATTATCTATTTTAACCACAAATGAAAAA-A-ATTGATCG
128 AATTATGATC-ATTTTAACCAAAAATGAAAAAGACATTGATCT
* * * * * * * * *
143464 AAAATTATTTACAAAATTATAAAATCAT-TTAAGGTGAGTGACCAGGCTGTCGAAGC-CATGAGT
1 AAAATAATTTATAAGATTATAAAATC-TCTTAAAGCGAGTAACAAGGCTTTC-AAACACATGAGT
* * ** ** * * *
143527 GGCTATATATAAAAGTTTCTTATCAATGGATGGCTTTTGCTTCACGTTTCCTGATGC-AACATCC
64 GACTATAAATGGACTTTTCTTGTCAATGGATGGCATTTGCTTCATGTTT-CTGATGCAAACATCC
*
143591 AATTATGA-CATGCTTTAACC-AAAATAGAAAAA-ACATTGAATTT
128 AATTATGATCAT--TTTAACCAAAAAT-GAAAAAGACATTG-ATCT
143634 AAAATAATTTATAAGATTATAAAA-CTACTTAAAGCGAGTAACAAGGC-TTCAAACACATGAGTG
1 AAAATAATTTATAAGATTATAAAATCT-CTTAAAGCGAGTAACAAGGCTTTCAAACACATGAGTG
* *
143697 ACTATAAATGCG-CTTTTCTTGTCAATGGATGGCATTTGCTTCATGTTTTCTAATGCAAACTTCC
65 ACTATAAATG-GACTTTTCTTGTCAATGGATGGCATTTGCTTCATG-TTTCTGATGCAAACATCC
* * **
143761 AAATATGATTATTTTAACCAAAAATGAAAAAGATTTTGATCT
128 AATTATGATCATTTTAACCAAAAATGAAAAAGACATTGATCT
* * * * * *** * *
143803 AAAATCATTTATAAGATTATAAAATCTTTTGAGGCGAGTAACAAGGCTTTTAATGGCATTATTGA
1 AAAATAATTTATAAGATTATAAAATCTCTTAAAGCGAGTAACAAGGCTTTCAAACACATGAGTGA
* *
143868 CTATAAATGGACTCTTCTTGAT-AATGGATGGCATCTGCTTCATGTTTCTCGATGCAAACATCCA
66 CTATAAATGGACTTTTCTTG-TCAATGGATGGCATTTGCTTCATGTTTCT-GATGCAAACATCCA
143932 ATTA
129 ATTA
143936 AAATCAATTT
Statistics
Matches: 614, Mismatches: 166, Indels: 63
0.73 0.20 0.07
Matches are distributed among these distances:
166 2 0.00
167 5 0.01
168 31 0.05
169 202 0.33
170 248 0.40
171 126 0.21
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (169 bp):
AAAATAATTTATAAGATTATAAAATCTCTTAAAGCGAGTAACAAGGCTTTCAAACACATGAGTGA
CTATAAATGGACTTTTCTTGTCAATGGATGGCATTTGCTTCATGTTTCTGATGCAAACATCCAAT
TATGATCATTTTAACCAAAAATGAAAAAGACATTGATCT
Found at i:144746 original size:170 final size:170
Alignment explanation
Indices: 144463--145558 Score: 824
Period size: 170 Copynumber: 6.4 Consensus size: 170
144453 ACGTGAATAT
* * * * * * * * **
144463 CCAATTATGATTTG-TTTTAACTAGAAATGAAAAAAATTTAGATTGATAATCATTTATGACCTTA
1 CCAATTATGATCTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATT-
* * * * *
144527 ACAAACTACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATTAA-TGACTATAAATAGACTTTTCT
65 ATAAACCATTTAAAGCAAGTAACAAGGCTTTCGATGTCA-TAAGTGACTATAAATAGACTTTTCT
* * * * *
144591 TGTTAATGGATGGCATGCGCTTTATGTTGCCCAATGAAAAAC
129 TGTCAATGGATGGCATCCACTTCATGTTTCCCAATGAAAAAC
* * * *
144633 CCAATTAT-TTCTGATTTTAATCAAAAATGAAAAAAATTTCT-ATTTAAAATCATTTATAAGATC
1 CCAATTATGATCTGATTTTAACCAAAAATGAAAAAGATTT-TGATTTAAAATCATTTATAAGATT
* **
144696 ATAAATTCATTTAAAGCAACAAACAAGGCTTTCGATGTCATAAGTGACTATAAATAGACTTTTCT
65 ATAAA-CCATTTAAAGCAAGTAACAAGGCTTTCGATGTCATAAGTGACTATAAATAGACTTTTCT
* * * * * ** *
144761 TCTCGATGGATGACATCTACTTCATGTTT-CAAGATTCAAACC
129 TGTCAATGGATGGCATCCACTTCATGTTTCCCA-ATGAAAAAC
* * * *
144803 ACCAATTATGAT-TGATTTTAACCAAAAATGAAAAAGCTTTTGATTTAAAATCGTTGATAACATT
1 -CCAATTATGATCTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATT
* * * **** * * *
144867 ATAAAACTATTTAAAGCAAGTAACAAGGTTTTGGAAAAAATGAGTGACTATTAATATACTTTTCT
65 AT-AAACCATTTAAAGCAAGTAACAAGGCTTTCGATGTCATAAGTGACTATAAATAGACTTTTCT
* * * * *
144932 TGTCAATGGATGGCTTTCACTTCATATTTCTCAATGAAAAAT
129 TGTCAATGGATGGCATCCACTTCATGTTTCCCAATGAAAAAC
* * * * * *
144974 CAAATTATAATATG-TTTTAACCAAAAATGAAAAAAAATTTGATTGAAAATCATTTATAAGATTA
1 CCAATTATGATCTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTA
* * * * * * * * *
145038 TTAAACCACTTAGAGTAAGTAATAAGGCTTTCTTG-GGT-GTGAGTTACTACAAATAGAC---TC
66 -TAAACCATTTAAAGCAAGTAACAAGGCTTTC--GATGTCATAAGTGACTATAAATAGACTTTTC
* * * ** * * * *
145098 TTATCAATGGATGCCATTCGTTTTATGTTTTCCAATGCAAATAT
128 TTGTCAATGGATGGCATCCACTTCATGTTTCCCAATG-AAAAAC
* ** * * * *
145142 CCAATTATGATC-AATTTTAATAAAAAATGAAAAGGATTTTGATCTAAACTTATTTATAAGATTA
1 CCAATTATGATCTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTA
* * *** * * * *
145206 TAAAACTAATTAAAATGAGTAACAAGGGTTT-GTTAG-CATAAGTGACTATAAATGGACTATTCT
66 T-AAACCATTTAAAGCAAGTAACAAGGCTTTCGAT-GTCATAAGTGACTATAAATAGACTTTTCT
* * *
145269 TGTCAATGGATGGCATCCGCTTCAAGTTTCCCAATGCAAACAC
129 TGTCAATGGATGGCATCCACTTCATGTTTCCCAATG-AAAAAC
* * * * * * * * *
145312 CTAAGTATTA-CTAATTTTAATCAAAAATGGAAACGATTCTGATTTAAAATAATTTATAAGATTA
1 CCAATTATGATCTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTA
* * * * * *
145376 TAAATCCATCTAAAGCGA-TAAACAAGGCTTTCGATATCTTAAGCGACTATAAATGGACTTTTCT
66 TAAA-CCATTTAAAGCAAGT-AACAAGGCTTTCGATGTCATAAGTGACTATAAATAGACTTTTCT
* * * * * *
145440 TCTCAATGGATGACATCCACTTCACGTTTCCTAAGGCAAAAC
129 TGTCAATGGATGGCATCCACTTCATGTTTCCCAATGAAAAAC
* *
145482 ACCAATTATGAT-TGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAGTCATTGATAAGATT
1 -CCAATTATGATCTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATT
145546 ATAAAACCATTTA
65 AT-AAACCATTTA
145559 NNNNNNNNNN
Statistics
Matches: 718, Mismatches: 177, Indels: 61
0.75 0.19 0.06
Matches are distributed among these distances:
165 1 0.00
167 47 0.07
168 77 0.11
169 17 0.02
170 323 0.45
171 244 0.34
172 9 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (170 bp):
CCAATTATGATCTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTTATAAGATTA
TAAACCATTTAAAGCAAGTAACAAGGCTTTCGATGTCATAAGTGACTATAAATAGACTTTTCTTG
TCAATGGATGGCATCCACTTCATGTTTCCCAATGAAAAAC
Found at i:144887 original size:341 final size:338
Alignment explanation
Indices: 144463--145558 Score: 1011
Period size: 341 Copynumber: 3.2 Consensus size: 338
144453 ACGTGAATAT
* * * * * * * * *
144463 CCAATTATGATTTG-TTTTAACTAGAAATGAAAAAAATTTAGATTGATAATCATTTATGACCTTA
1 CCAATTATGA-TTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTGATAACATTA
*
144527 -ACAAACTACTTAAAGCAAGTAACAAGGCTTTCGAAGGCATTAATGACTATAAATAGACTTTTCT
65 TA-AAACTATTTAAAGCAAGTAACAAGGCTTT-GAA-GCATTAATGACTATAAATAGACTTTTCT
* * * * *
144591 TGTTAATGGATGGCATGCGCTTTATGTTGCCCAATGAAAAACCCAATTATTTCTGATTTTAATCA
127 TGTCAATGGATGGCATCCGCTTCATGTTTCCCAATGAAAAACCAAATTATTTCTGATTTTAATCA
* *
144656 AAAATGAAAAAAATTTCTATTTAAAATCATTTATAAGATCATAAATTCATTTAAAGCAACAAACA
192 AAAATGAAAAAAATTTCTATTTAAAATCATTTATAAGATTATAAATCCATTTAAAGCAACAAACA
*
144721 AGGCTTTCGATGTCATAAGTGACTATAAATAGACTTTTCTTCTCGATGGATGACATCTACTTCAT
257 AGGCTTTCGATGTCATAAGTGACTATAAATAGACTTTTCTTCTCAATGGATGACATCTACTTCAT
*
144786 GTTTCAAGATTCAAACCA
322 GTTTCAAGATGCAAA-CA
* *
144804 CCAATTATGATTGATTTTAACCAAAAATGAAAAAGCTTTTGATTTAAAATCGTTGATAACATTAT
1 CCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTGATAACATTAT
* ** * * * *
144869 AAAACTATTTAAAGCAAGTAACAAGGTTTTGGAAAAAATGAGTGACTATTAATATACTTTTCTTG
66 AAAACTATTTAAAGCAAGTAACAAGGCTTT-G-AAGCATTAATGACTATAAATAGACTTTTCTTG
* * * * * * * * *
144934 TCAATGGATGGCTTTCACTTCATATTTCTCAATGAAAAATCAAATTATAATATG-TTTTAACCAA
129 TCAATGGATGGCATCCGCTTCATGTTTCCCAATGAAAAACCAAATTAT-TTCTGATTTTAATCAA
* * * * * ** *
144998 AAATGAAAAAAAATTT-GATTGAAAATCATTTATAAGATTATTAAA-CCACTTAGAGTAAGTAAT
193 AAATG-AAAAAAATTTCTATTTAAAATCATTTATAAGATTA-TAAATCCATTTAAAGCAACAAAC
* * * * * * *
145061 AAGGCTTTCTTG-GGT-GTGAGTTACTACAAATAGAC---TCTTATCAATGGATGCCAT-T-CGT
256 AAGGCTTTC--GATGTCATAAGTGACTATAAATAGACTTTTCTTCTCAATGGATGACATCTAC--
* * *
145119 TTTATGTTTTCCA-ATGCAAATA
317 TTCATG-TTTCAAGATGCAAACA
** ** * * * * * *
145141 TCCAATTATGATCAATTTTAATAAAAAATGAAAAGGATTTTGATCTAAACTTATTTATAAGATTA
1 -CCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTGATAACATTA
* *** * * * *
145206 TAAAACTAATTAAAATGAGTAACAAGGGTTTGTTAGCA-TAAGTGACTATAAATGGACTATTCTT
65 TAAAACTATTTAAAGCAAGTAACAAGGCTTTG-AAGCATTAA-TGACTATAAATAGACTTTTCTT
* * * * * *
145270 GTCAATGGATGGCATCCGCTTCAAGTTTCCCAATGCAAACACCTAAGTATTACTAATTTTAATCA
128 GTCAATGGATGGCATCCGCTTCATGTTTCCCAATG-AAAAACCAAATTATTTCTGATTTTAATCA
* ** * * * *
145335 AAAATGGAAACGA-TTCTGATTTAAAATAATTTATAAGATTATAAATCCATCTAAAGCGATAAAC
192 AAAATGAAAAAAATTTCT-ATTTAAAATCATTTATAAGATTATAAATCCATTTAAAGCAACAAAC
* * * * *
145399 AAGGCTTTCGATATCTTAAGCGACTATAAATGGACTTTTCTTCTCAATGGATGACATCCACTTCA
256 AAGGCTTTCGATGTCATAAGTGACTATAAATAGACTTTTCTTCTCAATGGATGACATCTACTTCA
*
145464 CGTTTCCTAAG--GCAAAACA
321 TGTTT-C-AAGATGC-AAACA
* *
145483 CCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAGTCATTGATAAGATTAT
1 CCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTGATAACATTAT
*
145548 AAAACCATTTA
66 AAAACTATTTA
145559 NNNNNNNNNN
Statistics
Matches: 589, Mismatches: 137, Indels: 58
0.75 0.17 0.07
Matches are distributed among these distances:
336 5 0.01
337 62 0.11
338 183 0.31
339 5 0.01
340 6 0.01
341 299 0.51
342 27 0.05
343 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (338 bp):
CCAATTATGATTGATTTTAACCAAAAATGAAAAAGATTTTGATTTAAAATCATTGATAACATTAT
AAAACTATTTAAAGCAAGTAACAAGGCTTTGAAGCATTAATGACTATAAATAGACTTTTCTTGTC
AATGGATGGCATCCGCTTCATGTTTCCCAATGAAAAACCAAATTATTTCTGATTTTAATCAAAAA
TGAAAAAAATTTCTATTTAAAATCATTTATAAGATTATAAATCCATTTAAAGCAACAAACAAGGC
TTTCGATGTCATAAGTGACTATAAATAGACTTTTCTTCTCAATGGATGACATCTACTTCATGTTT
CAAGATGCAAACA
Found at i:149927 original size:19 final size:19
Alignment explanation
Indices: 149903--149945 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
149893 AAAGGTCTAT
149903 GATGAGAGGTTCGATGCAA
1 GATGAGAGGTTCGATGCAA
* *
149922 GATGAGAGGTTTGATGTAA
1 GATGAGAGGTTCGATGCAA
149941 GATGA
1 GATGA
149946 AGGAATGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.33, C:0.05, G:0.37, T:0.26
Consensus pattern (19 bp):
GATGAGAGGTTCGATGCAA
Found at i:150739 original size:73 final size:73
Alignment explanation
Indices: 150611--150747 Score: 179
Period size: 73 Copynumber: 1.9 Consensus size: 73
150601 TTCAAACAGC
* * * *
150611 TCTTAGTCGACTAAGTCGTTTATGTCTCTGAACCCAGTTTTTGCTAGTAGTCTCTTAGTTGACTA
1 TCTTAGTCGACTAAGTAGTTTATGTCTCTAAACCCAGTTTTTGCTAGAAGTCTCTTAGTCGACTA
150676 ACGATACT
66 ACGATACT
* **
150684 TCTTAGTCGATTAAGTAGTTTATGTCTCTAAACTTAGTTTTTGGC-AGCAAG-CTCTTAGTCGAC
1 TCTTAGTCGACTAAGTAGTTTATGTCTCTAAACCCAGTTTTT-GCTAG-AAGTCTCTTAGTCGAC
150747 T
64 T
150748 GACAATGTAT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
73 51 0.93
74 4 0.07
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (73 bp):
TCTTAGTCGACTAAGTAGTTTATGTCTCTAAACCCAGTTTTTGCTAGAAGTCTCTTAGTCGACTA
ACGATACT
Found at i:152509 original size:19 final size:19
Alignment explanation
Indices: 152485--152527 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
152475 AATCATTCCT
152485 TCATCTTACATCGAACCTC
1 TCATCTTACATCGAACCTC
* *
152504 TCATCTTGCATTGAACCTC
1 TCATCTTACATCGAACCTC
152523 TCATC
1 TCATC
152528 ATAGACCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.23, C:0.35, G:0.07, T:0.35
Consensus pattern (19 bp):
TCATCTTACATCGAACCTC
Found at i:160575 original size:73 final size:73
Alignment explanation
Indices: 160447--160608 Score: 193
Period size: 73 Copynumber: 2.2 Consensus size: 73
160437 TACAAAATGC
* * ** *
160447 TCTTAGTCGACTAAGTCGTTTATGTCTCTAAACCTAGTTTCTACTAGTAGTCTCTTAGTTGACTA
1 TCTTAGTCGACTAAGTAGTTTATGTCTCTAAACCTAGTTTCTACAACAAGTCTCTTAGTCGACTA
160512 ACAATACT
66 ACAATACT
* * * *
160520 TCTTAGTCGATTAAGTAGTTTCTGTCTCTAAACTTAGTTTTTGACAACAAG-CTCTTAGTCGACT
1 TCTTAGTCGACTAAGTAGTTTATGTCTCTAAACCTAGTTTCT-ACAACAAGTCTCTTAGTCGACT
*
160584 AACAATGTCT
65 AACAAT-ACT
*
160594 T-TTGGTCGACTAAGT
1 TCTTAGTCGACTAAGT
160609 CTTCTCTGTT
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
73 67 0.89
74 8 0.11
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (73 bp):
TCTTAGTCGACTAAGTAGTTTATGTCTCTAAACCTAGTTTCTACAACAAGTCTCTTAGTCGACTA
ACAATACT
Found at i:161699 original size:171 final size:169
Alignment explanation
Indices: 161298--161715 Score: 438
Period size: 166 Copynumber: 2.5 Consensus size: 169
161288 AATTCGATTG
* * *
161298 AAAATAAAAAAGATCTTGATTTAATATCATTTATAAGAA-TATAAAACCATTTAAAGCAAGTAAC
1 AAAATAAAAAA-ATTTTGATTTAAAATTATTTATAA-AATTATAAAACCATTTAAAGCAAGTAAC
* *
161362 AAGGCA-TTCGATGGCATGAGCGACTGTAAATGGACATTTCTTCTAAATGAAGGGCATTCACTTT
64 AAGG-ATTTCGAAGGCATGAGCGACTATAAATGGACATTTCTTCTAAATGAAGGGCATTCACTTT
*
161426 ATGTTTCCTGATGCTAACATCAAATTATAATCTATTTGAACC
128 ATGTTTCCTGATGCTAACATCAAATTATAATCTATTTGAACA
* * *
161468 AAAA-AAAAAAATTTT-TTTTTAAA-TATTTTTAAAATTATAAAACCATTTAAAGCAAGTAACAA
1 AAAATAAAAAAATTTTGATTTAAAATTATTTATAAAATTATAAAACCATTTAAAGCAAGTAACAA
* * * * * * * *
161530 GGATTTCAAAGGCATGAGTGACTATATATGGACTTTTCTTGTGAATGGATGGC-TCTCA-TTTCA
66 GGATTTCGAAGGCATGAGCGACTATAAATGGACATTTCTTCTAAATGAAGGGCAT-TCACTTT-A
* * * * *
161593 TGTTTTCTGATGC-AATCATCCAATTATGATCTGTTTTAACTA
129 TGTTTCCTGATGCTAA-CATCAAATTATAATCTATTTGAAC-A
* * * * **
161635 AAAATGAAAAAAATTTTGATTGAAAATTATTTGTAAAATTATTAAACCACTTAAAGTGAGTAACA
1 AAAAT-AAAAAAATTTTGATTTAAAATTATTTATAAAATTATAAAACCATTTAAAGCAAGTAACA
* *
161700 AAGCTTTCGAAGGCAT
65 AGGATTTCGAAGGCAT
161716 NNNNNNNNNN
Statistics
Matches: 205, Mismatches: 33, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
165 9 0.04
166 111 0.54
167 9 0.04
168 4 0.02
169 17 0.08
170 9 0.04
171 46 0.22
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (169 bp):
AAAATAAAAAAATTTTGATTTAAAATTATTTATAAAATTATAAAACCATTTAAAGCAAGTAACAA
GGATTTCGAAGGCATGAGCGACTATAAATGGACATTTCTTCTAAATGAAGGGCATTCACTTTATG
TTTCCTGATGCTAACATCAAATTATAATCTATTTGAACA
Found at i:164007 original size:167 final size:167
Alignment explanation
Indices: 163379--164093 Score: 573
Period size: 170 Copynumber: 4.2 Consensus size: 167
163369 NNTTTCAACA
* * * * * *
163379 AAAAATGAAAAAAAAATGATTTAAAATCATTTATAAGATTTTTAAACCA-CTAAAATGAGTTACA
1 AAAAATG-AAAAAAATTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACA
* * * * * ** ** *
163443 AGTTTTTCGAAGGCGTGAGTGACTATAAATGGACTTTGCTTGTCAATGGATGGATTTTACTTCAC
65 AGTCTTTCAAAGGCATGAGTGACTATAAATGGATTTTTCTTGTCAATGGATGCCTTTCGCTTCAT
* * ** * ** *
163508 ATTTCCTAATAAAAACATCCAATTATGATCGAATTTGTCC
130 GTTTCCCAATGCAAATATCCAATTATGAT--AATTTAACT
* *
163548 AAAAATGAAAATGATTTCGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAAC
1 AAAAATGAAAA-AAATT-GATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAAC
* * ** * * *
163613 AA-TCCTTCGATTGCATGAGTGAATATAAATGGATTTTTCTTGTCAGTGGATAG-C-ATCGACTT
64 AAGTCTTTCAAAGGCATGAGTGACTATAAATGGATTTTTCTTGTCAATGGAT-GCCTTTCG-CTT
* *
163675 CATGTTTCCCCATGCAAAAATCCAATTATGATTAATTTTAACT
127 CATGTTTCCCAATGCAAATATCCAATTATGA-TAA-TTTAACT
** * * * * *
163718 AAAACA--AAGAAGATTTTGATTTAAAATCGTTTATAAGTTTATAAGACC-TTTAAAAGCGGGTA
1 AAAA-ATGAA-AA-AAATTGATTTAAAATCATTTATAAGATTATAAAACCATTT-AAAGTGAGTA
* * * ********** * * *
163780 ACAAGGCTTTCAAAGGCATGATTAACTATAAATGNNNNNNNNNNGTTAATGAAAGCCTTTCGCTT
62 ACAAGTCTTTCAAAGGCATGAGTGACTATAAATGGATTTTTCTTGTCAATGGATGCCTTTCGCTT
* *
163845 CATGTTTCTCAATGCAAATATCCAATTATGATAATTAAACT
127 CATGTTTCCCAATGCAAATATCCAATTATGATAATTTAACT
*
163886 AAAAATGAAAAAAATTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGATTAACTA
1 AAAAATGAAAAAAATTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAAC-A
* * * * *
163951 A-ACTTTCAAAGGCATAAGTGACTATAAATAGATTTTTTTTGTCAATGGATGCCTTTCGCTTCGT
65 AGTCTTTCAAAGGCATGAGTGACTATAAATGGATTTTTCTTGTCAATGGATGCCTTTCGCTTCAT
* * *
164015 GTTTCCCAATGCAAATATCAAATTATAATATGCTTTAACT
130 GTTTCCCAATGCAAATATCCAATTATGATA--ATTTAACT
** * *
164055 AAAAATGAAAAAAATCAATTTAAAATCATTGACAAGATT
1 AAAAATGAAAAAAATTGATTTAAAATCATTTATAAGATT
164094 GTCAAATCAG
Statistics
Matches: 425, Mismatches: 102, Indels: 38
0.75 0.18 0.07
Matches are distributed among these distances:
167 112 0.26
168 24 0.06
169 101 0.24
170 169 0.40
171 19 0.04
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (167 bp):
AAAAATGAAAAAAATTGATTTAAAATCATTTATAAGATTATAAAACCATTTAAAGTGAGTAACAA
GTCTTTCAAAGGCATGAGTGACTATAAATGGATTTTTCTTGTCAATGGATGCCTTTCGCTTCATG
TTTCCCAATGCAAATATCCAATTATGATAATTTAACT
Found at i:164824 original size:168 final size:168
Alignment explanation
Indices: 164509--165053 Score: 485
Period size: 168 Copynumber: 3.2 Consensus size: 168
164499 NNNNNNNNNN
* * * * ** *
164509 CTTTCGAAGGCATGAGTGACTATAAATTGACTTTTCGTA-TCAATGGATGGCATTTGCTTCATAT
1 CTTTTGAAAGCATGAGTGACTATAAATGGACTTTTC-TACTTAAT-GATGGCATTCACTTCACA-
* * * * * * * * **
164573 TTTCATCAA-G-AAACATTCAATTATGAAGGATTTTA-TCCAAAATAAAAAAAGATTTTGATTAA
63 CTTC-CCAATGCAAACATCCAATTATGACGGATTTTAGACAAAAAT-GAAAAA-ATATCAATTAA
* * *
164635 AAATTGTTTATAAAATTATAAAACAATTTAAAGTGAGTAACTAGG
125 AAATTATTTATAAAATTATAAAAC-ATTTAAAATGAGTAACAAGG
* * ** * * * **
164680 CTTTTTAAAGAATGAGTGACTATAAATGGACTTTTCTTGTCTAGTGATGGCTTTCATTTCACGTT
1 CTTTTGAAAGCATGAGTGACTATAAATGGACTTTTCTACT-TAATGATGGCATTCACTTCACACT
*** *
164745 TCTTGATGCAAACAT-CAATTATGATCTG-TTTTA-ACTAAAAATGAAAAAA-ATCAATTAAAAA
65 TCCCAATGCAAACATCCAATTATGA-CGGATTTTAGAC-AAAAATGAAAAAATATCAATTAAAAA
* * * * *
164806 TCATTTATAAGATTATAAATTCACTTAAAATAAGTAACAAGG
128 TTATTTATAAAATTATAAA-ACATTTAAAATGAGTAACAAGG
* *
164848 CTTTTGAAAGCATGAGTAACTATAAATTGACTTTTCTACTTAATGATGGCATTCACTTCACACTT
1 CTTTTGAAAGCATGAGTGACTATAAATGGACTTTTCTACTTAATGATGGCATTCACTTCACACTT
* * * * *
164913 CCCAATGCAATCATCCAATTGTGAGGGATTTTAGACAAAAATGAAAAAATTTCAATTTAAAATTA
66 CCCAATGCAAACATCCAATTATGACGGATTTTAGACAAAAATGAAAAAATATCAATTAAAAATTA
*
164978 TTTATAAAATCATAAAACTATTTAAAATGAGTAACAAGG
131 TTTATAAAATTATAAAAC-ATTTAAAATGAGTAACAAGG
** *
165017 CTTTTGATGGCATGAGTGACTATAAAAGGACTTTTCT
1 CTTTTGAAAGCATGAGTGACTATAAATGGACTTTTCT
165054 NNNNNNNNNN
Statistics
Matches: 299, Mismatches: 63, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
167 31 0.10
168 102 0.34
169 82 0.27
170 26 0.09
171 56 0.19
172 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (168 bp):
CTTTTGAAAGCATGAGTGACTATAAATGGACTTTTCTACTTAATGATGGCATTCACTTCACACTT
CCCAATGCAAACATCCAATTATGACGGATTTTAGACAAAAATGAAAAAATATCAATTAAAAATTA
TTTATAAAATTATAAAACATTTAAAATGAGTAACAAGG
Found at i:167274 original size:171 final size:170
Alignment explanation
Indices: 166804--167664 Score: 573
Period size: 171 Copynumber: 5.0 Consensus size: 170
166794 NNNNNNNAAG
* *
166804 GTTTTATAATCTTATAAATGATTTTAAATCAAAATTGTTTTCA-TTTTTGGTTAAAACCCATCAT
1 GTTTTATAATCTTATAAATGATTTAAAATCAAAATT-TTTTCATTTTTTGGTTAAAACCTATCAT
* * * * ** ** * *
166868 AGTTGGATGTTTGCATGAAACAACAATAATTGGATGCCATTGATTGACATGAAAATTCCTTTTAT
65 AATTGGATGTTTGCATGAAA-AACGATAATCGAATGCCATCCATTGACAAAAAAAGTCCATTTAT
* * * *
166933 AGTCACTTATGTCATCGAAAACCTTGTTAGTCACTTTAAAT-
129 AGTCACTCATGTCATCGAAAGCCTTGTTACTCGCTTTAAATA
* * * * * *
166974 GCTTTTATAATCATATAAATGATTTCATATCGACATCTTTTTCA-TTTTAGGTTAAAACCTATCA
1 G-TTTTATAATCTTATAAATGATTTAAAATCAAAAT-TTTTTCATTTTTTGGTTAAAACCTATCA
**** * * * * * *
167038 TAATTGGATGTTTAG-ATTGGGGTA-TATAAAACGGATGCCATCTATTGACAATAATAGTCCATT
64 TAATTGGATGTTT-GCA-TGAAAAACGAT-AATCGAATGCCATCCATTGACAAAAAAAGTCCATT
* * * *
167101 TATGGTCACTTATGTCATAGAAAGCCTTGTTACTCGCTTTAAAAA
126 TATAGTCACTCATGTCATCGAAAGCCTTGTTACTCGCTTTAAATA
* * ** *
167146 TTTTTATAATCTTATAAATTATTTAAAATCAAAATAATATCATTTTTTGGTTAAAACCTATCATA
1 GTTTTATAATCTTATAAATGATTTAAAATCAAAATTTTTTCATTTTTTGGTTAAAACCTATCATA
* * * * * * *
167211 ATTGGATGTTTGCGTTGAAAAACGATAATCCAATGCTATCCATTCATAAAAAAATTTCATTTAT-
66 ATTGGATGTTTGC-ATGAAAAACGATAATCGAATGCCATCCATTGACAAAAAAAGTCCATTTATA
* * * ** *
167275 GATAACTCATGTCATTGAAAGCCTTGTTACTTGCTTTACGTG
130 G-TCACTCATGTCATCGAAAGCCTTGTTACTCGCTTTAAATA
* * * * * *
167317 GTTTTATAAACTTTTAAATTATTTAAAATCAAAATTTTTTTC-TTTTTTAGTGAAAA-CTGATAA
1 GTTTTATAATCTTATAAATGATTTAAAATCAAAA-TTTTTTCATTTTTTGGTTAAAACCT-ATCA
* * * * * * * *** * *
167380 TAATTGGATGTTTTCATCAAGGAACGAGAAGCTAATG-TAGTCCATTGATTGAAAAAGTTCATCT
64 TAATTGGATGTTTGCATGAA-AAACGATAATCGAATGCCA-TCCATTGACAAAAAAAGTCCATTT
* * * *
167444 GTAGTCACTCATG-CAATCGAAAGCCTTGTTACTTGTTTTAAACA
127 ATAGTCACTCATGTC-ATCGAAAGCCTTGTTACTCGCTTTAAATA
* * * *
167488 GTTTTATAATGTTATAAATGATTTTAAATCAAAATCATTTTT--TTTTTTAGTTAAAACCTTTCA
1 GTTTTATAATCTTATAAATGATTTAAAATCAAAAT--TTTTTCATTTTTTGGTTAAAACCTATCA
* * * * * ** *
167551 CAATTGGACGTTTGCATCATGAAAC-ATGAAGT-GGATGCCATTAATTGACAAGAAAAA-TCTAT
64 TAATTGGATGTTTGCATGA-AAAACGAT-AA-TCGAATGCCATCCATTGACAA-AAAAAGTCCAT
* *** * * * *
167613 TTATAGTCACACACACCATCAAAAGCCTTGTTATTCACTTTAAATG
125 TTATAGTCACTCATGTCATCGAAAGCCTTGTTACTCGCTTTAAATA
167659 GTTTTA
1 GTTTTA
167665 NNNNNNNNNN
Statistics
Matches: 535, Mismatches: 130, Indels: 51
0.75 0.18 0.07
Matches are distributed among these distances:
170 19 0.04
171 491 0.92
172 25 0.05
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (170 bp):
GTTTTATAATCTTATAAATGATTTAAAATCAAAATTTTTTCATTTTTTGGTTAAAACCTATCATA
ATTGGATGTTTGCATGAAAAACGATAATCGAATGCCATCCATTGACAAAAAAAGTCCATTTATAG
TCACTCATGTCATCGAAAGCCTTGTTACTCGCTTTAAATA
Found at i:171459 original size:171 final size:170
Alignment explanation
Indices: 170627--172051 Score: 987
Period size: 171 Copynumber: 8.4 Consensus size: 170
170617 NNNNNNNNNN
* * * * * * * *
170627 ATGCCATCGAAAGCCTTGTTTCTCACTTCACATAGTTTTATAATCTAATAAAT-AGTTTTAAGTT
1 ATGCCATCGAAAGCCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGA-TTTTAAATC
* * * * * * * * * * *
170691 GAAATGCTTGTCATTTTTTTGTTCAAATCTATCGTAACTGGATGTTTGTATC-GAGAAACATGAA
65 AAAAT-ATTTTTA-TTTTTAGTTAAAACCTATCATAATTGGATGTTTGCATCAG-GGAACATGAA
** * * *
170755 GCGTATGCCATCCATTGACAAGACAAGTACA-TTATAGTCACGTC
127 ATGGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCAC-TC
* * * *
170799 ATGCCAT-TAGAACCCTTGTTAC-TAGCTTTAAATAGTTTTAAAATCTTATAAATGATTTTAAAT
1 ATGCCATCGA-AAGCCTTGTTACTTA-CTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT
* * * * * * *
170862 CAAAATATTTTTCATTTTCAGTGAAAACCTATCTTAATT-GCTCTGTGCA-CTAGGGAACGTGAA
64 CAAAATATTTTT-ATTTTTAGTTAAAACCTATCATAATTGGATGTTTGCATC-AGGGAACATGAA
* * *
170925 GTGGATGCCATCTATTGACAAGAAAAGTCCATTTAGAGTCACTC
127 ATGGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * *
170969 AAGACAT-AAAAGGCCTTGTTACTCACTTTAAATGG-TTTATAATCTTATAAATGATTTTAAA-C
1 ATGCCATCGAAA-GCCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATC
* * * * * *
171031 TAAAATATTTTACATTTTTGGTTAAAACCTATCTTAATTGGATGTTTGCGT-TGTGAA-ATGTAA
65 -AAAATATTTT-TATTTTTAGTTAAAACCTATCATAATTGGATGTTTGCATCAGGGAACATG-AA
* * * *
171094 AGTGGATGCCACCCATTGATAAGAAAAGTCCATTTCTAGTCACTT
127 A-TGGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * **
171139 ATGCCATCAAAAGCCTTGTTACTCACTCTAAATGGTTTTATAATCTTATGAATGATTTTGAATTG
1 ATGCCATCGAAAGCCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCA
* * * * * * ** *
171204 AACTCTTTTTGTTTTTTA-TTAAAACATATTATAATTGGATATTTGCATTGGGGAACTTGAAACT
66 AAATATTTTT-ATTTTTAGTTAAAACCTATCATAATTGGATGTTTGCATCAGGGAACATGAAA-T
* * * *
171268 -AATACCATCCATTGACAAGAAAAGTCCATTGATAGTAACTC
129 GGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * *
171309 ATGCTATCGAAAGCCTTGTTACTTGCTTTAAATGATTTTATAATCTTATTAACGATTATAAATCA
1 ATGCCATCGAAAGCCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCA
* * * ** *** *
171374 AAATACTTTTTGTTTTTAGTTAAAACTTATCATAACTGGACATTTGCATCATTCAATATGAAATG
66 AAATA-TTTTTATTTTTAGTTAAAACCTATCATAATTGGATGTTTGCATCAGGGAACATGAAATG
* * *
171439 GATGCTATCCATTGACAAGAAAAGTCCATTTATATTCAGTC
130 GATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
** * * ** * *
171480 ATGTTATTGAAAGCTTTGTTACTCCCTTTAAATGGTTTTACAATCATT-TAAACGA-TTTAAATC
1 ATGCCATCGAAAGCCTTGTTACTTACTTTAAATGGTTTTATAATC-TTATAAATGATTTTAAATC
* * * * ** ** *
171543 -AAA-A----T-GTTTT-GTTAGAACCTATCATAATTGGATGTTTTCCTTGGGGAATGTGAAGTG
65 AAAATATTTTTATTTTTAGTTAAAACCTATCATAATTGGATGTTTGCATCAGGGAACATGAAATG
* * *
171600 GATGCCATCCATTAACAAGAAAAGTCAATTTATAGTCACCC
130 GATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * *
171641 ATGCCCTCGAAATCCTAGTT-TTTCACTTTAAATGGTTTTATAATCTAATAAATGATTTAAAATC
1 ATGCCATCGAAAGCCTTGTTACTT-ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATC
* * * * * * * * *
171705 AAAATGTTTTTAATTTATCA-TGAAAATCTATCCTAATTAGATGTTTGCATCAAGAAACATGAAC
65 AAAATATTTTT-ATTT-TTAGTTAAAACCTATCATAATTGGATGTTTGCATCAGGGAACATGAAA
* * * * * * *
171769 TGGATTCCATCCATTAATAATAAAAGTCTATTTATAATAACTC
128 TGGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * * * * *
171812 ATGTCATCGAAAGCGTAGTTACTTGCTTTAAAGGGTTTTATAATCGTATAAGTCATTATAAATCA
1 ATGCCATCGAAAGCCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCA
* * * * *** *
171877 AAATCTTTTTCATTTTT-GATTAAAACCTATCATAATTGCATGTTTACATTATAAAACATGAAGT
66 AAATATTTTT-ATTTTTAG-TTAAAACCTATCATAATTGGATGTTTGCATCAGGGAACATGAAAT
* * * * * *
171941 AGATGCTATCCATTGACAAGACAAGTCTATTTATATTAACTC
129 GGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
* * * * * * * *
171983 ATGCCAGCAAAAGCTTTGTCACTTACTTTAAATGGTTTTAGAATCTTATAAATGACTCTAAATCG
1 ATGCCATCGAAAGCCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCA
172048 AAAT
66 AAAT
172052 TGTAACACTC
Statistics
Matches: 975, Mismatches: 237, Indels: 83
0.75 0.18 0.06
Matches are distributed among these distances:
160 2 0.00
161 106 0.11
162 11 0.01
163 4 0.00
168 5 0.01
169 70 0.07
170 267 0.27
171 450 0.46
172 59 0.06
173 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37
Consensus pattern (170 bp):
ATGCCATCGAAAGCCTTGTTACTTACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCA
AAATATTTTTATTTTTAGTTAAAACCTATCATAATTGGATGTTTGCATCAGGGAACATGAAATGG
ATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTC
Found at i:171902 original size:503 final size:503
Alignment explanation
Indices: 171046--172027 Score: 1107
Period size: 503 Copynumber: 2.0 Consensus size: 503
171036 TATTTTACAT
* * *
171046 TTTTGGTTAAAACCTATCTTAATTGGATGTTTGCGTTGTGAAATGTAAAGTGGATGCCACCCATT
1 TTTTGGTTAAAACCTATCATAATTGGATGTTTGCCTTGGGAAATGTAAAGTGGATGCCACCCATT
* * * * ** *
171111 GATAAGAAAAGTCCATTTCTAGTCACTTATGCCATCAAAAGCCTTGTTACTCACTCTAAATGGTT
66 AACAAGAAAAGTCAATTTATAGTCACCCATGCCATCAAAAGCCTAGTTACTCACTCTAAATGGTT
* * ** ** * * * * * * *
171176 TTATAATCTTATGAATGATTTTGAATTGAACTCTTTTTGTTTTTTATTAAAACATATTATAATTG
131 TTATAATCTAATAAATGATTTAAAATCAAAATCTTTTTATTTATCATGAAAACATATCATAATTA
*** * * * *
171241 GATATTTGCATTGGGGAACTTGAAACTAATACCATCCATTGACAAGAAAAGTCCATTGATAGTAA
196 GATATTTGCATCAAGAAACATGAAACTAATACCATCCATTAACAAGAAAAGTCCATTGATAATAA
* * *
171306 CTCATGCTATCGAAAGCCTTGTTACTTGCTTTAAATGATTTTATAATCTTATTAACGATTATAAA
261 CTCATGCTATCGAAAGCCTAGTTACTTGCTTTAAAGGATTTTATAATCGTATTAACGATTATAAA
* * * * ** *
171371 TCAAAATACTTTTTGTTTTTAGTTAAAACTTATCATAACTGGACATTTGCATCATTCAATATGAA
326 TCAAAATACTTTTTATTTTTAGTTAAAACCTATCATAACTGCACATTTACATCATAAAACATGAA
* * * ** *** *
171436 ATGGATGCTATCCATTGACAAGAAAAGTCCATTTATATTCAGTCATGTTATTGAAAGCTTTGTTA
391 ATAGATGCTATCCATTGACAAGAAAAGTCCATTTATATTAACTCATGCCAGCAAAAGCTTTGTCA
*
171501 CTCCCTTTAAATGGTTTTACAATCATTTAAACGATTTAAATCAAAATG
456 CTCACTTTAAATGGTTTTACAATCATTTAAACGATTTAAATCAAAATG
* * * * *
171549 TTTT-GTTAGAACCTATCATAATTGGATGTTTTCCTTGGGGAATGTGAAGTGGATGCCATCCATT
1 TTTTGGTTAAAACCTATCATAATTGGATGTTTGCCTTGGGAAATGTAAAGTGGATGCCACCCATT
* * * ** *
171613 AACAAGAAAAGTCAATTTATAGTCACCCATGCCCTCGAAATCCTAGTTTTTCACTTTAAATGGTT
66 AACAAGAAAAGTCAATTTATAGTCACCCATGCCATCAAAAGCCTAGTTACTCACTCTAAATGGTT
* *
171678 TTATAATCTAATAAATGATTTAAAATCAAAATGTTTTTAATTTATCATGAAAATC-TATCCTAAT
131 TTATAATCTAATAAATGATTTAAAATCAAAATCTTTTT-ATTTATCATGAAAA-CATATCATAAT
* * * * * * *
171742 TAGATGTTTGCATCAAGAAACATG-AACTGGATTCCATCCATTAATAATAAAAGTCTATTTATAA
194 TAGATATTTGCATCAAGAAACATGAAACT-AATACCATCCATTAACAAGAAAAGTCCATTGATAA
* *
171806 TAACTCATG-TCATCGAAAGCGTAGTTACTTGCTTTAAAGGGTTTTATAATCGTA-TAA-GTCAT
258 TAACTCATGCT-ATCGAAAGCCTAGTTACTTGCTTTAAAGGATTTTATAATCGTATTAACG--AT
* ** *
171868 TATAAATCAAAAT-CTTTTTCATTTTT-GATTAAAACCTATCATAATTGCATGTTTACATTATAA
320 TATAAATCAAAATACTTTTT-ATTTTTAG-TTAAAACCTATCATAACTGCACATTTACATCATAA
* * *
171931 AACATGAAGTAGATGCTATCCATTGACAAGACAAGTCTATTTATATTAACTCATGCCAGCAAAAG
383 AACATGAAATAGATGCTATCCATTGACAAGAAAAGTCCATTTATATTAACTCATGCCAGCAAAAG
* *
171996 CTTTGTCACTTACTTTAAATGGTTTTAGAATC
448 CTTTGTCACTCACTTTAAATGGTTTTACAATC
172028 TTATAAATGA
Statistics
Matches: 390, Mismatches: 81, Indels: 16
0.80 0.17 0.03
Matches are distributed among these distances:
501 1 0.00
502 149 0.38
503 239 0.61
504 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (503 bp):
TTTTGGTTAAAACCTATCATAATTGGATGTTTGCCTTGGGAAATGTAAAGTGGATGCCACCCATT
AACAAGAAAAGTCAATTTATAGTCACCCATGCCATCAAAAGCCTAGTTACTCACTCTAAATGGTT
TTATAATCTAATAAATGATTTAAAATCAAAATCTTTTTATTTATCATGAAAACATATCATAATTA
GATATTTGCATCAAGAAACATGAAACTAATACCATCCATTAACAAGAAAAGTCCATTGATAATAA
CTCATGCTATCGAAAGCCTAGTTACTTGCTTTAAAGGATTTTATAATCGTATTAACGATTATAAA
TCAAAATACTTTTTATTTTTAGTTAAAACCTATCATAACTGCACATTTACATCATAAAACATGAA
ATAGATGCTATCCATTGACAAGAAAAGTCCATTTATATTAACTCATGCCAGCAAAAGCTTTGTCA
CTCACTTTAAATGGTTTTACAATCATTTAAACGATTTAAATCAAAATG
Found at i:178615 original size:171 final size:161
Alignment explanation
Indices: 178438--178749 Score: 313
Period size: 171 Copynumber: 1.9 Consensus size: 161
178428 TTTGAAAACC
* * * ** *
178438 TTGTTACTCACTTTAAATGGTTTTATAATTTTATAAATGATTTTAAA-TCAAATTATTTTTTATT
1 TTGTTACTAAATTTAAATAGTTTTATAATCCTATAAATGATTTCAAATTCAAA-TATTTTTTATT
* * * * * *
178502 TT-TAGTTAAAACCTATCATAATTGGATGTTTTCATCGATGAACATGAAACAAATTCCATTCATT
65 TTCT-GTTAAAACATATCATAATTAGATGTTTGCATCGAGGAACATGAAACAAATACCATCCATT
*
178566 GATAAGAAAAGTCTATTNNNNNNNNNNCATGCCATCAAAAGCT
129 AATAAGAAAAGTCTATT----------CATGCCATCAAAAGCT
* * *
178609 TTGTTACTAAATTTAAATAGTTTTATAATCCTATAAATGATTTCAAATTGAAATCTTTTTTGTTT
1 TTGTTACTAAATTTAAATAGTTTTATAATCCTATAAATGATTTCAAATTCAAATATTTTTTATTT
** ** *
178674 TCTGTTAAAACATATCATAATTAGATGTTTGCATTTAGGAAGTTGAAACCAATACCATCCATTAA
66 TCTGTTAAAACATATCATAATTAGATGTTTGCATCGAGGAACATGAAACAAATACCATCCATTAA
178739 TAAGAAAAGTC
131 TAAGAAAAGTC
178750 CATTTATAGT
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
171 113 0.96
172 5 0.04
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.40
Consensus pattern (161 bp):
TTGTTACTAAATTTAAATAGTTTTATAATCCTATAAATGATTTCAAATTCAAATATTTTTTATTT
TCTGTTAAAACATATCATAATTAGATGTTTGCATCGAGGAACATGAAACAAATACCATCCATTAA
TAAGAAAAGTCTATTCATGCCATCAAAAGCT
Found at i:179265 original size:23 final size:23
Alignment explanation
Indices: 179233--179282 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
179223 TGGCATCCAT
*
179233 TAACAGGCAAAATCCATTTATAA
1 TAACAAGCAAAATCCATTTATAA
179256 TAACAAGCAAAATCCATTTATAA
1 TAACAAGCAAAATCCATTTATAA
179279 TAAC
1 TAAC
179283 TCATATTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.50, C:0.18, G:0.06, T:0.26
Consensus pattern (23 bp):
TAACAAGCAAAATCCATTTATAA
Found at i:179731 original size:339 final size:342
Alignment explanation
Indices: 179286--180139 Score: 903
Period size: 342 Copynumber: 2.5 Consensus size: 342
179276 TAATAACTCA
* * * * * *
179286 TATTAACTTTACAT-GATTTTATACTCTTATAAATGATTTTCAATCAAAATCCTTTTT-ATTTTT
1 TATTCACTTTAAATAGA-TTTATAATCTTATAAATGATTTTAAATTAAAAT-ATTTTTCATTTTT
* * *
179349 CGTTAAAACCTATCATAATTGGATGTTTGGATTATGAAACATGAAACGGATGCCATCCATTGACA
64 GGTTAAAACCTATCATAATTGGATGTTTGCATTATGAAACATGAAACAGATGCCATCCATTGACA
* * * * * *
179414 AGAAAAGTCCATTTATATTTACTTATGCCATAGAAAGCCTTGTTACTCACTATAAATGGTTTTAC
129 AGAAAAGTCCATTTATAGTCACTCAAGACATAGAAAGCCTTGTTACTCACTATAAATGATTTTAC
* * * * * * *
179479 AATCTCATAAATGATTTTAAATCAAA-T-CCTTTCATTTTTTGTTGAAGCCTATCATAATTGGAT
194 AACCTCATAAATGATTTTAAATCAAATTACCTTTCATTTTTTGATAAAACATACCATAACTGGAT
* * *
179542 GTTCACACT-GGTAACATGAAGTAGATACCATCCATTGACAAGAAAAGGACATTTATAATCACTC
259 GTTCACACTAGGGAACATAAAGCAGATACCATCCATTGACAAGAAAAGGACATTTATAATCACTC
* *
179606 ATACCATTGAAAGCCTTAT
324 ATACCACTGAAAGCCTTAC
* * *
179625 TGTTTACTTTAAATAGATTTATAATCTTATAAATGATTTTAAATTAAAATATTTTTCATGTTTGG
1 TATTCACTTTAAATAGATTTATAATCTTATAAATGATTTTAAATTAAAATATTTTTCATTTTTGG
* *** * * **
179690 TTAAAACCTATCTTAATTTTTTGTTTGCATTGA-GGAACATGAACCAGATGTTATCCATTGACAA
66 TTAAAACCTATCATAATTGGATGTTTGCATT-ATGAAACATGAAACAGATGCCATCCATTGACAA
* * * ** * * *
179754 GAAAAGTCCATTTATAGTCACTCAAGATATCGAAGGTTTTGTTACTCGCTTTAAATGATTTTATA
130 GAAAAGTCCATTTATAGTCACTCAAGACATAGAAAGCCTTGTTACTCACTATAAATGATTTTACA
* * ** *
179819 ACCTTATAAATGATTTTAGATCAAATTATTTTTCATTTTTTGATAAAACATACCTTAACTGGATG
195 ACCTCATAAATGATTTTAAATCAAATTACCTTTCATTTTTTGATAAAACATACCATAACTGGATG
** * * * ** *
179884 TTTGCATTAGGGATCATAAAGCAGATGCCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCA
260 TTCACACTAGGGAACATAAAGCAGATACCATCCATTGACAAGAAAAGGACATTTATAATCACTCA
* *
179949 TGCCACTGAAAGCCTTGC
325 TACCACTGAAAGCCTTAC
*
179967 TATTCATTTTAAATAGATTTATAATCTTATAAA-GAATTTTAAATTAAAATATTTTTCATTTTTG
1 TATTCACTTTAAATAGATTTATAATCTTATAAATG-ATTTTAAATTAAAATATTTTTCATTTTTG
** ** * * * ** * **
180031 GTTAAAATTTATCATAATTGGATGTTTGCATTGGGAAACAAGAAGCAAATGGAATCCATTAATGA
65 GTTAAAACCTATCATAATTGGATGTTTGCATTATGAAACATGAAACAGATGCCATCCATTGACAA
* * * * * *
180096 GAAAGGTTCATTTATAGTCACTCATGCCATTGAAAACCTTGTTA
130 GAAAAGTCCATTTATAGTCACTCAAGACATAGAAAGCCTTGTTA
180140 GTTACNNNNN
Statistics
Matches: 417, Mismatches: 90, Indels: 13
0.80 0.17 0.03
Matches are distributed among these distances:
338 5 0.01
339 172 0.41
340 4 0.01
341 34 0.08
342 202 0.48
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (342 bp):
TATTCACTTTAAATAGATTTATAATCTTATAAATGATTTTAAATTAAAATATTTTTCATTTTTGG
TTAAAACCTATCATAATTGGATGTTTGCATTATGAAACATGAAACAGATGCCATCCATTGACAAG
AAAAGTCCATTTATAGTCACTCAAGACATAGAAAGCCTTGTTACTCACTATAAATGATTTTACAA
CCTCATAAATGATTTTAAATCAAATTACCTTTCATTTTTTGATAAAACATACCATAACTGGATGT
TCACACTAGGGAACATAAAGCAGATACCATCCATTGACAAGAAAAGGACATTTATAATCACTCAT
ACCACTGAAAGCCTTAC
Found at i:179768 original size:171 final size:171
Alignment explanation
Indices: 179286--180139 Score: 819
Period size: 171 Copynumber: 5.0 Consensus size: 171
179276 TAATAACTCA
* * * * * *
179286 TATTAACTTTACAT-GATTTTATACTCTTATAAATGATTTTCAATCAAAATCCTTTTT-ATTTTT
1 TATTCACTTTAAATAGA-TTTATAATCTTATAAATGATTTTAAATTAAAAT-ATTTTTCATTTTT
* * * * *
179349 CGTTAAAACCTATCATAATTGGATGTTTGGATT-ATGAAACATGAAACGGATGCCATCCATTGAC
64 GGTTAAAACCTATCATAATTGGATGTTTGCATTGA-GGAACATGAAGCAGATGCCATCCATTGAC
* * * *
179413 AAGAAAAGTCCATTTATATTTACTTATGCCATAGAAAGCCTTGT
128 AAGAAAAGTCCATTTATAGTCACTCATGCCATTGAAAGCCTTGT
* * * * * * * ** *
179457 TACTCACTATAAATGGTTTTACAATCTCATAAATGATTTTAAA-TCAAAT-CCTTTCATTTTTTG
1 TATTCACTTTAAATAGATTTATAATCTTATAAATGATTTTAAATTAAAATATTTTTCATTTTTGG
* * ** * * * *
179520 TTGAAGCCTATCATAATTGGATGTTCACACTG-GTAACATGAAGTAGATACCATCCATTGACAAG
66 TTAAAACCTATCATAATTGGATGTTTGCATTGAGGAACATGAAGCAGATGCCATCCATTGACAAG
** * * *
179584 AAAAGGACATTTATAATCACTCATACCATTGAAAGCCTTAT
131 AAAAGTCCATTTATAGTCACTCATGCCATTGAAAGCCTTGT
* * *
179625 TGTTTACTTTAAATAGATTTATAATCTTATAAATGATTTTAAATTAAAATATTTTTCATGTTTGG
1 TATTCACTTTAAATAGATTTATAATCTTATAAATGATTTTAAATTAAAATATTTTTCATTTTTGG
* *** * **
179690 TTAAAACCTATCTTAATTTTTTGTTTGCATTGAGGAACATGAACCAGATGTTATCCATTGACAAG
66 TTAAAACCTATCATAATTGGATGTTTGCATTGAGGAACATGAAGCAGATGCCATCCATTGACAAG
* ** * * **
179755 AAAAGTCCATTTATAGTCACTCAAGATATCGAAGGTTTTGT
131 AAAAGTCCATTTATAGTCACTCATGCCATTGAAAGCCTTGT
* * * * * * *
179796 TACTCGCTTTAAAT-GATTTTATAACCTTATAAATGATTTTAGATCAAATTATTTTTCATTTTTT
1 TATTCACTTTAAATAGA-TTTATAATCTTATAAATGATTTTAAATTAAAATATTTTTCATTTTTG
* * * * * * *
179860 GATAAAACATACCTTAACTGGATGTTTGCATT-AGGGATCATAAAGCAGATGCCATCCATTGACA
65 GTTAAAACCTATCATAATTGGATGTTTGCATTGA-GGAACATGAAGCAGATGCCATCCATTGACA
* *
179924 AGAAAAGTCCATTTATAGTCACTCATGCCACTGAAAGCCTTGC
129 AGAAAAGTCCATTTATAGTCACTCATGCCATTGAAAGCCTTGT
*
179967 TATTCATTTTAAATAGATTTATAATCTTATAAA-GAATTTTAAATTAAAATATTTTTCATTTTTG
1 TATTCACTTTAAATAGATTTATAATCTTATAAATG-ATTTTAAATTAAAATATTTTTCATTTTTG
** * * ** * **
180031 GTTAAAATTTATCATAATTGGATGTTTGCATTG-GGAAACAAGAAGCAAATGGAATCCATTAATG
65 GTTAAAACCTATCATAATTGGATGTTTGCATTGAGG-AACATGAAGCAGATGCCATCCATTGACA
* * *
180095 AGAAAGGTTCATTTATAGTCACTCATGCCATTGAAAACCTTGT
129 AGAAAAGTCCATTTATAGTCACTCATGCCATTGAAAGCCTTGT
180138 TA
1 TA
180140 GTTACNNNNN
Statistics
Matches: 539, Mismatches: 132, Indels: 24
0.78 0.19 0.03
Matches are distributed among these distances:
168 98 0.18
169 37 0.07
170 43 0.08
171 358 0.66
172 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (171 bp):
TATTCACTTTAAATAGATTTATAATCTTATAAATGATTTTAAATTAAAATATTTTTCATTTTTGG
TTAAAACCTATCATAATTGGATGTTTGCATTGAGGAACATGAAGCAGATGCCATCCATTGACAAG
AAAAGTCCATTTATAGTCACTCATGCCATTGAAAGCCTTGT
Found at i:182488 original size:170 final size:169
Alignment explanation
Indices: 182115--183167 Score: 846
Period size: 171 Copynumber: 6.2 Consensus size: 169
182105 NNNNNNNNNN
* * * ** *
182115 ACATGAAGTGGATGCCATTAATTGACAAGAAAAGTCCATTTATAGTCACACACACCATCAAAAGC
1 ACATGAAGTGGATGCCA-TCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCATCGAAAGC
* * ********** ** *
182180 CTTGTTATTCACTTNNNNNNNNNNTATAATCTTATAAATGATTTTAAATTGAAATCTTTTTCAT-
65 CTTATTACTCACTTTAAATGATTTTATAATCTTATAAATGATTTTAAATCAAAATATTTTT--TG
* *
182244 TTTTGGTTAAAACCTATCATAATTGGATGTTTCCATT-GGAGA
128 TTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGA-A
* * * * * * *
182286 GCATGAATTGGA-ACCTATCCATTGAGAAGAAAAGTCTATTTATAATCATTCATACCATCGAAAG
1 ACATGAAGTGGATGCC-AT-CATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCATCGAAAG
* * * * *
182350 CCTTATTAC-CTACTTTAAATGATTTTATAACCATATAAATTATGTGAAATCAAAATATTCTTTT
64 CCTTATTACTC-ACTTTAAATGATTTTATAATCTTATAAATGATTTTAAATCAAAATATT-TTTT
*
182414 GTTTT-GTTAAAACCTTTCATAATTGGATGTTTGCATTAAGAA
127 GTTTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAA
* * * * *
182456 ACATGAAATAGATGCCATGCACTGATAAGAAAAGTCTATTTATAGTCACTCATGCCATCAAAAGC
1 ACATGAAGTGGATGCCAT-CATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCATCGAAAGC
* * * * *
182521 CTTATTACTCGCTTTAAATGGTTTTATAATCTTGTAAATGATTTCAAATCAAAATCTTTTTTGTT
65 CTTATTACTCACTTTAAATGATTTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTTG-T
* * * * * * *
182586 TTTGGTGATAGCCTATCATAATTGGATGATTACATTAGGGA
129 TTTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAA
* * * * ** *
182627 ACATGAAGTGGATGGCATCCATTGGCAAGGAAAGTCTATTTATTGTTGCTCATGCTATCGAAAGC
1 ACATGAAGTGGATGCCAT-CATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCATCGAAAGC
* * * * *
182692 CTTCTTACTCGCTTTAAAT-AGTTTTATATTCTTATAAATTATTTTAAATCCAAATA--TTTT-T
65 CTTATTACTCACTTTAAATGA-TTTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTTGT
*
182753 TTT-ATTAAAA-CTCATCATAATTGGATGTTTGCATTATAG-A
129 TTTGGTTAAAACCT-ATCATAATTGGATGTTTGCATTA-AGAA
* * * * * * * * *
182793 CCATGAAGCGGATGCCCTCTATTGACAGGAAAAGTCCATTTACAGTCACTCTTGCCATTGAAATC
1 ACATGAAGTGGATGCCATC-ATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCATCGAAAGC
* * * * **
182858 CTTGTTACTCACTTTAAATG-CTTTATAATCGTATAAATGATTTTAAATCAAATTATTTTTCATT
65 CTTATTACTCACTTTAAATGATTTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTTGTT
* * * * *
182922 TTGGTTAGAACTTTTCATAATTGGATGTTTGCATCATGAA
130 TTGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAA
* * * * * *
182962 ACATGAAGCAGG-TGCCATCAATTGATAAGAAAAGTCCATTTATAGTCACACACGCCATC-AAAT
1 ACATGAAG-TGGATGCCATC-ATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCATCGAAAG
* * * * **
183025 CCTTGTTACTCACTTTAAAT-AGTTTTATAATCTTATAAATGATTTTAAACCATAATCCTTTTCG
64 CCTTATTACTCACTTTAAATGA-TTTTATAATCTTATAAATGATTTTAAATCAAAAT-ATTTTTT
* * * * *
183089 GTTTTAGTTAATACCTTTCATAATAGCATGTTTGCACCTT--GAA
127 GTTTTGGTTAAAACCTATCATAATTGGATGTTTGCA--TTAAGAA
*
183132 ACATGAAGTGGATACCATCCATTGACAAGAAAAGTC
1 ACATGAAGTGGATGCCAT-CATTGACAAGAAAAGTC
183168 CATCAATTAC
Statistics
Matches: 702, Mismatches: 151, Indels: 59
0.77 0.17 0.06
Matches are distributed among these distances:
165 32 0.05
166 89 0.13
167 8 0.01
168 29 0.04
169 112 0.16
170 205 0.29
171 223 0.32
172 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (169 bp):
ACATGAAGTGGATGCCATCATTGACAAGAAAAGTCTATTTATAGTCACTCATGCCATCGAAAGCC
TTATTACTCACTTTAAATGATTTTATAATCTTATAAATGATTTTAAATCAAAATATTTTTTGTTT
TGGTTAAAACCTATCATAATTGGATGTTTGCATTAAGAA
Found at i:182551 original size:341 final size:336
Alignment explanation
Indices: 182204--183064 Score: 844
Period size: 341 Copynumber: 2.6 Consensus size: 336
182194 NNNNNNNNNN
*
182204 TATAATCTTATAAATGATTTTAAATTGAAATCTTTTTCATTTTTGGTTAAAACCTATCATAATTG
1 TATAATCTTATAAATGATTTTAAATTAAAATCTTTTTCATTTTTGGTTAAAACCTATCATAATTG
* * *
182269 GATGTTTCCATT-GGAGAGCATGAATTGGA-ACCTATCCATTGAG-AAGAAAAGTCTATTTATAA
66 GATGTTTACATTAGG-GAACATGAAGTGGATACC-ATCCATTG-GCAAGAAAAGTCTATTTATAA
*
182331 TCATTCATACCATCGAAAGCCTTATTAC-CTACTTTAAAT-GATTTTATAACCATATAAATTATG
128 TCACTCATACCATCGAAAGCCTTATTACTC-ACTTTAAATAG-TTTTATAACCATATAAATTATG
* *
182394 TGAAATCAAAATATTCTTTTGTTTTGTTAAAAC-CTTTCATAATTGGATGTTTGCATTA-AGAAA
191 TGAAATCAAAATA---TTTT-TTTTATTAAAACTC-ATCATAATTGGATGTTTGCATTATAG-AA
* * * *
182457 CATGAAATAGATGCCATGC-ACTGATAAGAAAAGTCTATTTATAGTCACTCATGCCATCAAAAGC
250 CATGAAACAGATGCCAT-CTACTGACAAGAAAAGTCCATTTACAGTCACTCATGCCATCAAAAGC
* *
182521 CTTATTACTCGCTTTAAATGGTTT
314 CTTATTACTCACTTTAAAT-GCTT
* * * ** * * *
182545 TATAATCTTGTAAATGATTTCAAATCAAAATCTTTTTTGTTTTTGGTGATAGCCTATCATAATTG
1 TATAATCTTATAAATGATTTTAAATTAAAATCTTTTTCATTTTTGGTTAAAACCTATCATAATTG
* ** * ** **
182610 GATGATTACATTAGGGAACATGAAGTGGATGGCATCCATTGGCAAGGAAAGTCTATTTATTGTTG
66 GATGTTTACATTAGGGAACATGAAGTGGATACCATCCATTGGCAAGAAAAGTCTATTTATAATCA
* * * * ** * * *
182675 CTCATGCTATCGAAAGCCTTCTTACTCGCTTTAAATAGTTTTATATTCTTATAAATTATTTTAAA
131 CTCATACCATCGAAAGCCTTATTACTCACTTTAAATAGTTTTATAACCATATAAATTATGTGAAA
* * * *
182740 TCCAAATATTTTTTTTATTAAAACTCATCATAATTGGATGTTTGCATTATAGACCATGAAGCGGA
196 TCAAAATATTTTTTTTATTAAAACTCATCATAATTGGATGTTTGCATTATAGAACATGAAACAGA
* * * * ** * *
182805 TGCCCTCTATTGACAGGAAAAGTCCATTTACAGTCACTCTTGCCATTGAAATCCTTGTTACTCAC
261 TGCCATCTACTGACAAGAAAAGTCCATTTACAGTCACTCATGCCATCAAAAGCCTTATTACTCAC
182870 TTTAAATGCTT
326 TTTAAATGCTT
* * * * * * *
182881 TATAATCGTATAAATGATTTTAAATCAAATTATTTTTCA-TTTTGGTTAGAACTTTTCATAATTG
1 TATAATCTTATAAATGATTTTAAATTAAAATCTTTTTCATTTTTGGTTAAAACCTATCATAATTG
* * * * * * * ** * *
182945 GATGTTTGCATCATGAAACATGAAGCAGG-TGCCATCAATTGATAAGAAAAGTCCATTTATAGTC
66 GATGTTTACATTAGGGAACATGAAG-TGGATACCATCCATTGGCAAGAAAAGTCTATTTATAATC
* ** * * * *
183009 ACACACGCCATC-AAATCCTTGTTACTCACTTTAAATAGTTTTATAATCTTATAAAT
130 ACTCATACCATCGAAAGCCTTATTACTCACTTTAAATAGTTTTATAACCATATAAAT
183065 GATTTTAAAC
Statistics
Matches: 427, Mismatches: 84, Indels: 25
0.80 0.16 0.05
Matches are distributed among these distances:
334 40 0.09
335 75 0.18
336 38 0.09
337 100 0.23
338 7 0.02
340 1 0.00
341 161 0.38
342 5 0.01
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (336 bp):
TATAATCTTATAAATGATTTTAAATTAAAATCTTTTTCATTTTTGGTTAAAACCTATCATAATTG
GATGTTTACATTAGGGAACATGAAGTGGATACCATCCATTGGCAAGAAAAGTCTATTTATAATCA
CTCATACCATCGAAAGCCTTATTACTCACTTTAAATAGTTTTATAACCATATAAATTATGTGAAA
TCAAAATATTTTTTTTATTAAAACTCATCATAATTGGATGTTTGCATTATAGAACATGAAACAGA
TGCCATCTACTGACAAGAAAAGTCCATTTACAGTCACTCATGCCATCAAAAGCCTTATTACTCAC
TTTAAATGCTT
Found at i:183292 original size:140 final size:139
Alignment explanation
Indices: 183036--183307 Score: 332
Period size: 140 Copynumber: 1.9 Consensus size: 139
183026 CTTGTTACTC
* * *
183036 ACTTTAAATAGTTTTATAATCTTATAAATGATTTTAAACCATAATCCTTTTCGGTTTTAGTTAAT
1 ACTTTAAATAGTTTTATAATCTTATAAATGATTTTAAACCAAAATCCTTTTCAGTTTTAGTTAAA
* * * *
183101 ACCTTTCATAATAGCATGTTTGCACCTTGAAACATGAAGTGGATACCATCCATTGACA-AGAAAA
66 ACCTATCATAATAGCATGTTTGCA-CTTGAAACATGAAGCGAATACAATCCATTGA-ATAGAAAA
183165 GTCCATCAATT
129 GTCCATCAATT
* ** * * * *
183176 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATGAAAATCTTTTTTATTTTTGGTTAAA
1 ACTTTAAATAGTTTTATAATCTTATAAATGATTTTAAACCAAAATCCTTTTCAGTTTTAGTTAAA
* * * *
183241 ACCTATCATAATTGGATGTTTGCA-TTGGGGAACATGAAGCGAATGCAATCCATTGAATAGAAAA
66 ACCTATCATAATAGCATGTTTGCACTT--GAAACATGAAGCGAATACAATCCATTGAATAGAAAA
183305 GTC
129 GTC
183308 TATTTATAGT
Statistics
Matches: 111, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
138 2 0.02
139 1 0.01
140 108 0.97
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (139 bp):
ACTTTAAATAGTTTTATAATCTTATAAATGATTTTAAACCAAAATCCTTTTCAGTTTTAGTTAAA
ACCTATCATAATAGCATGTTTGCACTTGAAACATGAAGCGAATACAATCCATTGAATAGAAAAGT
CCATCAATT
Found at i:183469 original size:311 final size:308
Alignment explanation
Indices: 182868--183477 Score: 789
Period size: 311 Copynumber: 2.0 Consensus size: 308
182858 CTTGTTACTC
* *
182868 ACTTTAAATGCTTTATAATCGTATAAATGATTTTAAATCAAATTATTTTTCATTTTGGTTAGAAC
1 ACTTTAAATGCTTTATAATCGTATAAATGATTTTAAATCAAAATATTTTTCATTTTGGTTAAAAC
* * * * *
182933 TTTTCATAATTGGATGTTTGCATCATGAAACATGAAGCAGGTGCCATCAATTGATAAGAAAAGTC
66 CTATCATAATTGGATGTTTGCATCAGGAAACATGAAGCAGATGCAATCAATTGATAAGAAAAGTC
*
182998 CATTTATAGTCACACACGCCATCAAATCCTTGTTACTCACTTTAAATAGTTTTATAATCTTATAA
131 CATTTATAGTCACACACGCCATCAAAGCCTTGTTACTCACTTTAAATAGTTTTATAATCTTATAA
* * * *
183063 ATGATTTTAAACCATAATCCTTTTCGGTTTTAGTTAATACCTTTCATAATAGCATGTTTGCACCT
196 ATGATTTTAAACCATAATCCTTTTCAGTTTTAGTTAAAACCTTTCACAATAGCATGTTTGCACCA
*
183128 TGAAACATGAAGTGGATACCATCCATTGACAAGAAAAGTCCATCAATT
261 TGAAACATGAAGTAGATACCATCCATTGACAAGAAAAGTCCATCAATT
* * * * *
183176 ACTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATGAAAATCTTTTTTATTTTTGGTTAAA
1 ACTTTAAAT-GCTTTATAATCGTATAAATGATTTTAAATCAAAATATTTTTCA-TTTTGGTTAAA
** * *
183241 ACCTATCATAATTGGATGTTTGCATTGGGGAACATGAAGC-GAATGCAATCCATTGA-ATAGAAA
64 ACCTATCATAATTGGATGTTTGCATCAGGAAACATGAAGCAG-ATGCAATCAATTGATA-AGAAA
* * * * *
183304 AGTCTATTTATAGTTACTCATGCCATCGAAAGCCTTGTTACTCACTTTAAATGGTTTTATAATCT
127 AGTCCATTTATAGTCACACACGCCATC-AAAGCCTTGTTACTCACTTTAAATAGTTTTATAATCT
* * * * * *
183369 TATGAATGATTTTAAATCA-AATTCTATTTCATTTTTTGTTAAAACCTTTTACAATTAG-ATGTT
191 TATAAATGATTTTAAACCATAATCCT-TTTCAGTTTTAGTTAAAACCTTTCACAA-TAGCATGTT
* * *
183432 TGCACCATGAAACCT-AAGATAGATGCCATCGATTGACAAGAAAAGT
254 TGCACCATGAAACATGAAG-TAGATACCATCCATTGACAAGAAAAGT
183478 ACATTCTTTT
Statistics
Matches: 258, Mismatches: 36, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
308 9 0.03
309 39 0.15
310 91 0.35
311 116 0.45
312 3 0.01
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (308 bp):
ACTTTAAATGCTTTATAATCGTATAAATGATTTTAAATCAAAATATTTTTCATTTTGGTTAAAAC
CTATCATAATTGGATGTTTGCATCAGGAAACATGAAGCAGATGCAATCAATTGATAAGAAAAGTC
CATTTATAGTCACACACGCCATCAAAGCCTTGTTACTCACTTTAAATAGTTTTATAATCTTATAA
ATGATTTTAAACCATAATCCTTTTCAGTTTTAGTTAAAACCTTTCACAATAGCATGTTTGCACCA
TGAAACATGAAGTAGATACCATCCATTGACAAGAAAAGTCCATCAATT
Found at i:184830 original size:171 final size:170
Alignment explanation
Indices: 184539--185505 Score: 843
Period size: 171 Copynumber: 5.7 Consensus size: 170
184529 NNNNNGTAAC
* * * ** ** ** *
184539 TAACAAGGTTTTCAATGGCATGAGTGACTATAAATGAACCTTTCTCATTGATGGATTCCATTTGC
1 TAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGC
* * * * * * * *
184604 TTCTTGTTTCCTAGTGCAAGCATCCAATTATGATCA-ATTTTAACCAAAAATGAAAAATATTTTA
66 TTCATGTTCCCCAATGCAAACATCCAATTAAGAT-AGGTTTTAA-CAAAAATGAAAAATATTTTG
* * *
184668 ATTTAAAATCCTTTATAAGATTATAAATCCATTTAAAATGAA
129 ATTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAG
*
184710 TAACAAGGCTTTCAATGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATGGATGGCATCTGC
1 TAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGC
* * * * * * *
184775 TTTATGATCCCCAATGCAGACACCCAGTTAAGATATGTTTTATCAAAATATGAAAAATATTTTGA
66 TTCATGTTCCCCAATGCAAACATCCAATTAAGATAGGTTTTAACAAAA-ATGAAAAATATTTTGA
* * *
184840 TCTAAAATCATTTATAAGGTTATAAAAT-CATTTAAAGCGAG
130 TTTAAAATCATTTATAAGATTAT-AAATCCATTTAAAGTGAG
* * * ** * * * * *
184881 TAACAAAGCCTTCGATATCTTAAGTGACTATAAATGGACTTTTCTTGTCAATGGATGACATTTGG
1 TAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGC
* * *** * **
184946 TTCATGTTCCTCAATGTAAACAAGAAATTAAGATAGGTTTTAACCAAACATGAAAAATATTTCAA
66 TTCATGTTCCCCAATGCAAACATCCAATTAAGATAGGTTTTAA-CAAAAATGAAAAATATTTTGA
* * **
185011 TTTAAAATCATTTATTAGATTATAAATCTATTTAAAGCAAG
130 TTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAG
* * * * * * * *
185052 CAATAAGGCTTTCAATGGTATGAGTGATTATAAAT-GTCTTTTTCTTGTCGATGGATGGTATCTA
1 TAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGAC-TTTTCTTGTCAATGGATGGCATCTG
* * ** * **
185116 CTTCATGTT-ACCAGTGTGAACATCCAATTATGATAGGTTTTAACAAAAAATGAAAAGGA-TTTG
65 CTTCATGTTCCCCAATGCAAACATCCAATTAAGATAGGTTTTAAC-AAAAATGAAAAATATTTTG
* * * *
185179 ATATAAAATCATTTATAAGATTATAAAACCATTTATAGTTAG
129 ATTTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAG
* * * * * ***
185221 TAACAAGGCTTTCTATGGCGTAAGTGAATATAAATGGACTTTTCTTCTCAATGGATGGCATCCAT
1 TAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGC
* ** * * *
185286 TTCATGTTTCATAATCCAAACATCCAATTATGATAGGTTTTAACCAAAAAT-AAAAAGGATTTTG
66 TTCATGTTCCCCAATGCAAACATCCAATTAAGATAGGTTTTAA-CAAAAATGAAAAA-TATTTTG
* ** * *
185350 ATTGAAAATCATTTATAAGGGTATAAAAT-CATGTAAAGTTAG
129 ATTTAAAATCATTTATAAGATTAT-AAATCCATTTAAAGTGAG
* * * * * *
185392 TAGCAAGGCTTTCGATGGCATGAGTTATTATAAATGGA-TTTTCCTTGTTAATGGATGCCATCTG
1 TAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGACTTTT-CTTGTCAATGGATGGCATCTG
* * * ** *
185456 CTTCAAGTTCCCTAATGCAAATATCCAATTATTATAGGTTTCAACAAAAA
65 CTTCATGTTCCCCAATGCAAACATCCAATTAAGATAGGTTTTAACAAAAA
185506 ACAAGAAGAT
Statistics
Matches: 638, Mismatches: 144, Indels: 29
0.79 0.18 0.04
Matches are distributed among these distances:
169 99 0.16
170 96 0.15
171 432 0.68
172 11 0.02
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.35
Consensus pattern (170 bp):
TAACAAGGCTTTCAATGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCTGC
TTCATGTTCCCCAATGCAAACATCCAATTAAGATAGGTTTTAACAAAAATGAAAAATATTTTGAT
TTAAAATCATTTATAAGATTATAAATCCATTTAAAGTGAG
Found at i:185801 original size:326 final size:327
Alignment explanation
Indices: 185197--185849 Score: 739
Period size: 326 Copynumber: 2.0 Consensus size: 327
185187 TCATTTATAA
* ** * * *
185197 GATTATAAAACCATTTATAGTTAGTAACAAGGCTTTCTATGGCGTAAGTGAATATAAATGGACTT
1 GATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATGGCATAAGTGAATACAAATGGACTT
* * * *
185262 TTCTTCTCAATGGATGGCATCCATTTCATGTTTCATAATCCAAACATCCAATTATGATAGGTTTT
66 TTCTTCTCAATGGATGACATCCACTTCATGTTTCATAATCCAAACATCCAATTAAGATAGATTTT
* * * **
185327 AACCAAAAATAAAAAGGATTTTGATTGAAAATCATTTATAAGGGTATAAAATCATGTAAAGTTAG
131 AACCAAAAACAAAAAGCATTTTGATTGAAAATCATTTATAAGAGTATAAAATCATGTAAAGCAAG
* * * ** * * *
185392 TAGCAAGGCTTTCGATGGCATGAGTTATTATAAATGGATTTTCCTTGTTAATGGATGCCATCTGC
196 TAACAAGGATTTCGATGGCATGAGTAAACAAAAATAGATTTTCCTTGTCAATGGATGCCATCTGC
* * * *
185457 TTCAAGTTCCCTAATGCAAATATCCAATTATTATAGGT-TTCAACAAAAAAC-AAGAAGATTTTG
261 TTCAAGTTCACTAATGCAAACATCCAATTATGATAGGTCTT-AACAAAAAACAAAAAAGATTTTG
185520 ATT
325 ATT
* * *
185523 GATTATAAAACCATTTAAAGCGAGTGATAAGGCTTTCGATGGCATGAGT-AATTACAAATGGACT
1 GATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATGGCATAAGTGAA-TACAAATGGACT
* * * * * ****
185587 TTTCTTGTCAATGGATGATATCTACTTCATGTTTCCTGATGTGTACATCCAATTAAGATAGATTT
65 TTTCTTCTCAATGGATGACATCCACTTCATGTTTCATAATCCAAACATCCAATTAAGATAGATTT
* * * *
185652 TAACCAAAAACAACAAA-CCTTTTGATTTAAAATCATTTATAAGATTATAAAA-CTATTTAAAGC
130 TAACCAAAAACAA-AAAGCATTTTGATTGAAAATCATTTATAAGAGTATAAAATC-ATGTAAAGC
*
185715 AAGTAACAAGGATTTTGATGGCATGAGTAAACAAAAATAGACTTTT-CTTGTCAATGGATGGCC-
193 AAGTAACAAGGATTTCGATGGCATGAGTAAACAAAAATAGA-TTTTCCTTGTCAATGGAT-GCCA
* * * *
185778 TC-GTCTTCATGTTTCAC-AATGCAAACATCTAATTATGATAGGTCTTAACCAAGAACAAAAAAG
256 TCTG-CTTCAAG-TTCACTAATGCAAACATCCAATTATGATAGGTCTTAACAAAAAACAAAAAAG
185841 ATTTTGATT
319 ATTTTGATT
185850 AAAAATCTTG
Statistics
Matches: 270, Mismatches: 48, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
325 4 0.01
326 236 0.87
327 30 0.11
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.34
Consensus pattern (327 bp):
GATTATAAAACCATTTAAAGCGAGTAACAAGGCTTTCGATGGCATAAGTGAATACAAATGGACTT
TTCTTCTCAATGGATGACATCCACTTCATGTTTCATAATCCAAACATCCAATTAAGATAGATTTT
AACCAAAAACAAAAAGCATTTTGATTGAAAATCATTTATAAGAGTATAAAATCATGTAAAGCAAG
TAACAAGGATTTCGATGGCATGAGTAAACAAAAATAGATTTTCCTTGTCAATGGATGCCATCTGC
TTCAAGTTCACTAATGCAAACATCCAATTATGATAGGTCTTAACAAAAAACAAAAAAGATTTTGA
TT
Found at i:185931 original size:171 final size:171
Alignment explanation
Indices: 185522--185932 Score: 456
Period size: 171 Copynumber: 2.4 Consensus size: 171
185512 AGATTTTGAT
* * * * *
185522 TGATTATAAAACCATTTAAAGCGAGTGA-TAAGGCTTTCGATGGCATGAGTAATTACAAATGGAC
1 TGATTATAAAACTATTTAAAGCAAGTAACT-AGGCTTTCGATGGCATGAGTAACTAAAAATGGAC
* * *** *
185586 TTTTCTTGTCAATGGATGATATCTACTTCATGTTTCCTGATGTGTACATCCAATTAAGATAGATT
65 TTTTCTTGTCAATGGATGACATCTACTTCATGTTTCCTAATGCAAACATCCAATTAAGATAGATC
* * *
185651 TTAACCAAAAACAACAAACCTTTTGATTTAAAATCATTTATA
130 TTAACCAAAAACAAAAAACATTTTGATTAAAAATCATTTATA
* * * * *
185693 AGATTATAAAACTATTTAAAGCAAGTAACAAGGATTTTGATGGCATGAGTAAAC-AAAAATAGAC
1 TGATTATAAAACTATTTAAAGCAAGTAACTAGGCTTTCGATGGCATGAGT-AACTAAAAATGGAC
* * * * *
185757 TTTTCTTGTCAATGGATGGCCTCGT-CTTCATGTTTCAC-AATGCAAACATCTAATTATGATAGG
65 TTTTCTTGTCAATGGATGACATC-TACTTCATGTTTC-CTAATGCAAACATCCAATTAAGATAGA
* * *
185820 TCTTAACCAAGAACAAAAAAGATTTTGATTAAAAATC-TTGTATG
128 TCTTAACCAAAAACAAAAAACATTTTGATTAAAAATCATT-TATA
* * *
185864 TGATTATAAAACTATTTAAA-CTAAGTAACTAGGCTTTCGATGGCAAGAGTTACTATAAATGGAC
1 TGATTATAAAACTATTTAAAGC-AAGTAACTAGGCTTTCGATGGCATGAGTAACTAAAAATGGAC
185928 TTTTC
65 TTTTC
185933 NNNNNNNNNN
Statistics
Matches: 198, Mismatches: 35, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
170 5 0.03
171 189 0.95
172 4 0.02
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (171 bp):
TGATTATAAAACTATTTAAAGCAAGTAACTAGGCTTTCGATGGCATGAGTAACTAAAAATGGACT
TTTCTTGTCAATGGATGACATCTACTTCATGTTTCCTAATGCAAACATCCAATTAAGATAGATCT
TAACCAAAAACAAAAAACATTTTGATTAAAAATCATTTATA
Found at i:188671 original size:162 final size:163
Alignment explanation
Indices: 188223--188846 Score: 483
Period size: 169 Copynumber: 3.8 Consensus size: 163
188213 TTGGAAAATG
* * * * *
188223 TGAAGCGAATACCATCCATTAACAAGAAAAGTCCATTTATAGTTACTCAT-TCACTTGAAAGCCT
1 TGAAGCAAATACCATCCATTAATAAGAAAAGTCCATTTATAGTCACTCATGCCA-TT-AAAGCAT
** * * * * * *
188287 AATTGCTTGTTTTAAATGGTTTTAGAGTCTTATAAATGATTTTAAATC-AAATTTTTTTCTTCTT
64 TGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTT-TT-TT
*** * ** *
188351 TGGTTAAAACTGATTATAATTGGAAGTTTGCAT-AAAAAACCA
127 AAATT-AAA--G-TCATAATT-GATCTTTACATCAAAAAA-CA
*** * * * * * * * * * * *
188393 TGAAATG-AAA-GGTATCTACTGACAAGAAAATTCCATTTAGAGTTAGTCGTGCCTTTGAAAGCC
1 TG-AA-GCAAATACCATCCATTAATAAGAAAAGTCCATTTATAGTCACTCATGCCATT-AAAGCA
* * * *
188456 TTGTTGCACGCTTTCAATGGTCTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTTTTTA
63 TTGTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTTTTTA
* *
188521 AATT-AA-TCATAATTGGATCTTTGCATCAAAAAATA
128 AATTAAAGTCATAATT-GATCTTTACATCAAAAAACA
*
188556 TGAAGCAGAA-GCCATCCATTAATAAGAAAAGTCCATTTATAGTCACTCATGCCATTAAAGCATT
1 TGAAGCA-AATACCATCCATTAATAAGAAAAGTCCATTTATAGTCACTCATGCCATTAAAGCATT
* *
188620 GTTACTCGCTTTAAATGGTTTTATAATCTTATAGATGATTTTAAATCAAAATCTTTTTCATTTTT
65 GTTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTT--TTTTA
* * *** *
188685 AGTTAAAATCGGTCATAATTGATGTTTACATTGGAAAACG
128 AATT-AAA---GTCATAATTGATCTTTACATCAAAAAACA
* * * *
188725 TGAGGCAAATATCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAGCATTG
1 TGAAGCAAATACCATCCATTAATAAGAAAAGTCCATTTATAGTCACTCATGCCATTAAAGCATTG
* * * *
188790 TTACTTGCTTTAAATGATTTTATAATATTATAAATGGTTTTAAATCAAAA-CTTTTTT
66 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTT
188847 ATTTTTAGTT
Statistics
Matches: 371, Mismatches: 67, Indels: 36
0.78 0.14 0.08
Matches are distributed among these distances:
161 1 0.00
162 63 0.17
163 56 0.15
164 13 0.04
166 3 0.01
167 2 0.01
168 8 0.02
169 119 0.32
170 91 0.25
171 14 0.04
172 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (163 bp):
TGAAGCAAATACCATCCATTAATAAGAAAAGTCCATTTATAGTCACTCATGCCATTAAAGCATTG
TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATCAAAATCTTTTTTTTTAAAT
TAAAGTCATAATTGATCTTTACATCAAAAAACA
Found at i:188774 original size:169 final size:169
Alignment explanation
Indices: 188223--189664 Score: 901
Period size: 171 Copynumber: 8.5 Consensus size: 169
188213 TTGGAAAATG
* * * * *
188223 TGAAGCGAATACCATCCATTAACAAGAAAAGTCCATTTATAGTTACTCAT-TCACTTGAAAGCCT
1 TGAAGCAAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCA-TT-AAAGCAT
** * * * * * * *
188287 AATTGCTTGTTTTAAATGGTTTTAGAGTCTTATAAATGATTTTAAATC-AAATTTTTTTC-TTCT
64 TGTTACTCGCTTTAAATAGTTTTATAATCTTAT-AATGATTTTAAATCAAAATATTTTTCATT-T
* * * * ***
188350 TTGGTTAAAA-CTGATTATAATTGGAAGTTTGCA-TAAAAAACCA
127 TTAGTTAAAATC-GATCATAATTGGATGTTTACATTGGGAAA-CA
*** * * * * * * * * *
188393 TGAAATG-AAA-GGTATCTACTGACAAGAAAATTCCATTTAGAGTTAGTCGTGCCTTTGAAAGCC
1 TG-AA-GCAAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATT-AAAGCA
* * * * * *
188456 TTGTTGCACGCTTTCAATGGTCTTATAATCTTATAAATGATTTTAAATC-AAA-A-TCTT--TTT
63 TTGTTACTCGCTTTAAATAGTTTTATAATCTTAT-AATGATTTTAAATCAAAATATTTTTCATTT
** * * **** *
188516 TT--TT-AAATTAATCATAATTGGATCTTTGCATCAAAAAATA
127 TTAGTTAAAATCGATCATAATTGGATGTTTACATTGGGAAACA
* * *
188556 TGAAGCAGAA-GCCATCCATTAATAAGAAAAGTCCATTTATAGTCACTCATGCCATTAAAGCATT
1 TGAAGCA-AATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATTAAAGCATT
* *
188620 GTTACTCGCTTTAAATGGTTTTATAATCTTATAGATGATTTTAAATCAAAATCTTTTTCATTTTT
65 GTTACTCGCTTTAAATAGTTTTATAATCTTATA-ATGATTTTAAATCAAAATATTTTTCATTTTT
* * *
188685 AGTTAAAATCGGTCATAATT-GATGTTTACATTGGAAAACG
129 AGTTAAAATCGATCATAATTGGATGTTTACATTGGGAAACA
* * * *
188725 TGAGGCAAATATCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCCATCAAAGCATTG
1 TGAAGCAAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATTAAAGCATTG
* * *
188790 TTACTTGCTTTAAAT-GATTTTATAATATTATAAATGGTTTTAAATCAAAACT-TTTTT-ATTTT
66 TTACTCGCTTTAAATAG-TTTTATAATCTTAT-AATGATTTTAAATCAAAA-TATTTTTCATTTT
*
188852 TAGTTAAAATCGATCATAATTGGATGTTTGCATTGGG-AA-A
128 TAGTTAAAATCGATCATAATTGGATGTTTACATTGGGAAACA
* * * * * * * **
188892 TGAAAAGCAAATGCCATCTATTGGCAAGATAAGTCCATTTACAGTTATTCATGCTTTTGAAAGCA
1 TG--AAGCAAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATT-AAAGCA
** * * * * * *
188957 TTGTTACTCATTTTCAGTAGTTTAATAATCTTATAATTGATTTTAAATCGAACTATTTTTTATTT
63 TTGTTACTCGCTTTAAATAGTTTTATAATCTTATAA-TGATTTTAAATCAAAATATTTTTCATTT
* * *
189022 CTAGTTACAACAT--ATCATAATTGGATGTTTTCATTGGGAAACG
127 TTAGTTA-AA-ATCGATCATAATTGGATGTTTACATTGGGAAACA
* * * *
189065 TGAAGCAAA-AGCCATCCATTGATAA-AAAAGTCTATTTATAGTCACTCATG-CTTTCAAAAGCT
1 TGAAGCAAATA-CCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATT--AAAGCA
* * * **
189127 TTCTTACTCACTTTAAATTA-TTTTCA-AATCTTATCAGTGACCTTAAAT-AAAACTATTTTTCT
63 TTGTTACTCGCTTTAAA-TAGTTTT-ATAATCTTAT-AATGATTTTAAATCAAAA-TATTTTTC-
* * * *
189189 ATTTTTTGTTGAAGTCGATCATAATTGGATGTTTGA-ATTAGGAAACA
123 ATTTTTAGTTAAAATCGATCATAATTGGATGTTT-ACATTGGGAAACA
* * ** ** *** *
189236 TGAAGCCAATTCCATCCATTGACGGGAAAAGTCCATTTATAGTTTCTCATGCCCGCAAAAGCCTT
1 TGAAGCAAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATG-CCATTAAAGCATT
* * * * * ** *
189301 GTTACTTG-TGATCAGTAGTTTAATAATCTTATAAATGATTTTAGAA--AATTTTTTTTTTCATT
65 GTTACTCGCT-TTAAATAGTTTTATAATCTTAT-AATGATTTTA-AATCAA-AATATTTTTCATT
* ** ** * * ***
189363 TTTGGTTAAAATAAATGTTAATTAGATGTTTACGTCAAGAAACA
126 TTTAGTTAAAATCGATCATAATTGGATGTTTACATTGGGAAACA
* * * * *** *
189407 TCAAGTTAAA-GCCATCCATTGACAAGAAAAGTCTATTTATAGTCACTCATGTTTTTGAAAACCA
1 TGAAG-CAAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATT--AAAGCA
* * * * *
189471 TT-TTAGTCTCTTTAAATAGTTTTATAATCTTATCAATAATCTTAAATCAAAATATTTTTTATTT
63 TTGTTACTCGCTTTAAATAGTTTTATAATCTTAT-AATGATTTTAAATCAAAATATTTTTCATTT
* *
189535 TTCA-TTAAAATTGATCATAATTGGATGTTTGC-TTAGGGAAACA
127 TT-AGTTAAAATCGATCATAATTGGATGTTTACATT-GGGAAACA
* * * *
189578 TG-AGCCAAATACCATCCATTGAGAAGAAAAGTCCATTTATAGTCACTAATGCCATCAAAAGCCT
1 TGAAG-CAAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCAT-TAAAGCAT
* * *
189642 TATTACTCGTTTTAAATAATTTT
64 TGTTACTCGCTTTAAATAGTTTT
189665 TTTTTGTTTT
Statistics
Matches: 987, Mismatches: 222, Indels: 125
0.74 0.17 0.09
Matches are distributed among these distances:
161 2 0.00
162 51 0.05
163 62 0.06
164 8 0.01
165 3 0.00
166 3 0.00
167 9 0.01
168 33 0.03
169 183 0.19
170 229 0.23
171 318 0.32
172 79 0.08
173 6 0.01
174 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (169 bp):
TGAAGCAAATACCATCCATTGACAAGAAAAGTCCATTTATAGTCACTCATGCCATTAAAGCATTG
TTACTCGCTTTAAATAGTTTTATAATCTTATAATGATTTTAAATCAAAATATTTTTCATTTTTAG
TTAAAATCGATCATAATTGGATGTTTACATTGGGAAACA
Found at i:188873 original size:501 final size:508
Alignment explanation
Indices: 188212--189308 Score: 1138
Period size: 501 Copynumber: 2.2 Consensus size: 508
188202 NNNNNNNTAT
* * * * *
188212 ATTGGAAAATGTGAAGCGAATACCATCCATTAACAAGAAAAGTCCATTTATAGTTACTCATTCAC
1 ATTGGAAAACGTGAAGCAAATATCATCCATTGACAAGAAAAGTCCATTTATAGTTACTCATGC-C
* * ** * * * * * *
188277 TTGAAAGCCTAATTGCTTGTTTTAAATGGTTTTAGAGTCTTATAAATGATTTTAAATCAAATTTT
65 ATCAAAGCCTTGTTACTTGCTTTAAATGATTTTAGAATATTATAAATGATTTTAAATCAAACTTT
* * * * *
188342 TTTCTTCTTTGGTTAAAACTGATTATAATTGGAAGTTTGCATAAAAAACCATGAAATG-AAA-GG
130 TTTATTCTTTAGTTAAAACTGATCATAATTGGAAGTTTGCATAAAAAA--ATGAAAAGCAAATGC
* * * * * * *
188405 TATCTACTGACAAGAAAATTCCATTTAGAGTTAGTCGTGCCTTTGAAAGCCTTGTTGCACGCTTT
193 CATCTACTGACAAGAAAAGTCCATTTACAGTTAGTCATGCCTTTGAAAGCATTGTTACACACTTT
* * *
188470 CAATGGTCTT-ATAATCTTATAAATGATTTTAAATC-AA-AATCTTTT-TTT-T-TA-AA-TTAA
258 CAATAGT-TTAATAATCTTATAAATGATTTTAAATCGAACAATTTTTTATTTCTATACAACAT-A
* *
188527 TCATAATTGGATCTTTGCATCAAAAAATATGAAGCAGAAGCCATCCATTAATAAGAAAAGTCCAT
321 TCATAATTGGATCTTTGCATCAAAAAACATGAAGCAAAAGCCATCCATTAATAA-AAAAGTCCAT
* * *
188592 TTATAGTCACTCATGCCATT-AAAGCATTGTTACTCGCTTTAAATGGTTTT-ATAATCTTAT-AG
385 TTATAGTCACTCATG-CATTAAAAGCATTCTTACTCACTTTAAATGATTTTCA-AATCTTATCAG
** * *
188654 ATGATTTTAAATCAAAA-TCTTTTTC-ATTTTTAGTTAAAATCGGTCATAATT-GATGTTT-A
448 -TGACCTTAAAT-AAAACTATTTTTCTATTTTTAGTTAAAATCGATCATAATTGGATGTTTGA
* * *
188713 CATTGGAAAACGTGAGGCAAATATCATCCATTGATAAGAAAAGTCCATTTATAGTCACTCATGCC
1 -ATTGGAAAACGTGAAGCAAATATCATCCATTGACAAGAAAAGTCCATTTATAGTTACTCATGCC
* * *
188778 ATCAAAGCATTGTTACTTGCTTTAAATGATTTTATAATATTATAAATGGTTTTAAATCAAAACTT
65 ATCAAAGCCTTGTTACTTGCTTTAAATGATTTTAGAATATTATAAATGATTTTAAATC-AAACTT
* ****
188843 TTTTATT-TTTAGTTAAAA-TCGATCATAATTGGATGTTTGCATTGGGAAATGAAAAGCAAATGC
129 TTTTATTCTTTAGTTAAAACT-GATCATAATTGGAAGTTTGCATAAAAAAATGAAAAGCAAATGC
* * * * * * *
188906 CATCTATTGGCAAGATAAGTCCATTTACAGTTATTCATGCTTTTGAAAGCATTGTTACTCATTTT
193 CATCTACTGACAAGAAAAGTCCATTTACAGTTAGTCATGCCTTTGAAAGCATTGTTACACACTTT
* * *
188971 CAGTAGTTTAATAATCTTATAATTGATTTTAAATCGAACTATTTTTTATTTCTAGTTACAACATA
258 CAATAGTTTAATAATCTTATAAATGATTTTAAATCGAACAATTTTTTATTTCTA--TACAACATA
* * **** * * *
189036 TCATAATTGGATGTTTTCATTGGGAAACGTGAAGCAAAAGCCATCCATTGATAAAAAAGTCTATT
321 TCATAATTGGATCTTTGCATCAAAAAACATGAAGCAAAAGCCATCCATTAATAAAAAAGTCCATT
* * *
189101 TATAGTCACTCATGCTTTCAAAAGCTTTCTTACTCACTTTAAATTATTTTCAAATCTTATCAGTG
386 TATAGTCACTCATGCATT-AAAAGCATTCTTACTCACTTTAAATGATTTTCAAATCTTATCAGTG
* * *
189166 ACCTTAAATAAAACTATTTTTCTATTTTTTGTTGAAGTCGATCATAATTGGATGTTTGA
450 ACCTTAAATAAAACTATTTTTCTATTTTTAGTTAAAATCGATCATAATTGGATGTTTGA
* * ** *
189225 ATTAGG-AAACATGAAGCCAAT-TCCATCCATTGACGGGAAAAGTCCATTTATAGTTTCTCATGC
1 ATT-GGAAAACGTGAAGCAAATAT-CATCCATTGACAAGAAAAGTCCATTTATAGTTACTCATGC
**
189288 CCGCAAAAGCCTTGTTACTTG
64 CATC-AAAGCCTTGTTACTTG
189309 TGATCAGTAG
Statistics
Matches: 484, Mismatches: 86, Indels: 40
0.79 0.14 0.07
Matches are distributed among these distances:
499 7 0.01
500 6 0.01
501 160 0.33
502 68 0.14
503 6 0.01
504 3 0.01
505 1 0.00
507 3 0.01
508 30 0.06
509 96 0.20
510 27 0.06
511 59 0.12
512 18 0.04
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (508 bp):
ATTGGAAAACGTGAAGCAAATATCATCCATTGACAAGAAAAGTCCATTTATAGTTACTCATGCCA
TCAAAGCCTTGTTACTTGCTTTAAATGATTTTAGAATATTATAAATGATTTTAAATCAAACTTTT
TTATTCTTTAGTTAAAACTGATCATAATTGGAAGTTTGCATAAAAAAATGAAAAGCAAATGCCAT
CTACTGACAAGAAAAGTCCATTTACAGTTAGTCATGCCTTTGAAAGCATTGTTACACACTTTCAA
TAGTTTAATAATCTTATAAATGATTTTAAATCGAACAATTTTTTATTTCTATACAACATATCATA
ATTGGATCTTTGCATCAAAAAACATGAAGCAAAAGCCATCCATTAATAAAAAAGTCCATTTATAG
TCACTCATGCATTAAAAGCATTCTTACTCACTTTAAATGATTTTCAAATCTTATCAGTGACCTTA
AATAAAACTATTTTTCTATTTTTAGTTAAAATCGATCATAATTGGATGTTTGA
Found at i:193039 original size:166 final size:167
Alignment explanation
Indices: 192613--194081 Score: 607
Period size: 171 Copynumber: 8.7 Consensus size: 167
192603 TCTATTTTAG
* * * * * *
192613 CAAAAAATAAAAAAAATTGA-TTAGAAATCAATTGTAAAATTATAAAATCCTTTAAAGCAAATAA
1 CAAAAAA-GAAAAAAATTGATTTA-AAATCATTTGTAAAATTATAAAATCATTTAAAACGAGTAA
* * * * *
192677 TCATGCTTTTGAAGGTATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTTTTCTTA
64 TAAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCATTTTCTTC
* *
192742 ACATTTCCTTATGCAAACATACAATTATTATATGTTTTAAC
129 ACGTTTCCTCATGCAAACATAC-ATTATTATA-GTTTTAAC
* * * * * * * * *
192783 CAAAGATG-AAAAAATTAGATTTAAAATCTTTTTTAAAATTATAAAACCACTTAAAATGCGTAAC
1 CAAAAAAGAAAAAAATT-GATTTAAAATCATTTGTAAAATTATAAAATCATTTAAAACGAGTAAT
** * * *
192847 AAGGCTTTCAAAGGCATGAGTGACTATGAATGGACTTTTCTTGTCAATGGATGGCATTTACTTCA
65 AAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCATTTTCTTCA
* *
192912 CGTTTCC-CAGTGTAAATCATTC-TTATTA-A-TTTTAAC
130 CGTTTCCTCA-TGCAAA-CATACATTATTATAGTTTTAAC
* *
192948 CAAAAACAGAAAAAAATTGATTTAAAATCATTTGTAAGATTATATAATCATTTAAAACGAGTAAT
1 CAAAAA-AGAAAAAAATTGATTTAAAATCATTTGTAAAATTATAAAATCATTTAAAACGAGTAAT
* * * * * *
193013 AAGGCTTTTGATGGCATTAGTGACTATAAATTA-ACTTTTCTTCTCAATCGATGGTATTTTCCTC
65 AAGGCTTTTGAAGGCATGAGTGACTATAAA-TAGACTTTTCTTGTCAATGGATGGCATTTTCTTC
* * * * *
193077 ACGTTTCCTTAAGCAAACATCCAATTATGATCGATTTTAAC
129 ACGTTTCCTCATGCAAACATAC-ATTATTATAG-TTTTAAC
* ** ** * *** * * *
193118 CAAAAATGAAATATATTTTGATTTAAGGTTATTAACAAGATTATAAAACCATTTAAAGA-GACTA
1 CAAAAAAGAAA-A-AAATTGATTTAAAATCATTTGTAAAATTATAAAATCATTTAAA-ACGAGTA
* ** * * *
193182 AAAAGG-TTTTCAGAA-ATATGAGTGACTATAAATGGACTTTTCTTATCAATGGATGGC-TTTAA
63 ATAAGGCTTTT--GAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCATTT-T
* * * * * ** *
193244 CTTGATGTTTCTTGATGTAAACAT-CTAATTAACATTTGTTTTAAC
125 CTTCACGTTTCCTCATGCAAACATAC--ATTATTA-TAGTTTTAAC
* * * * * * * * *
193289 CAAAAATGAAAAAAAATTTGATCTAAAATCATTTATAAGATTAATAAACT-ACTGAACACAAGTA
1 CAAAAAAG-AAAAAAA-TTGATTTAAAATCATTTGTAAAATT-ATAAAATCATTTAAAACGAGTA
* * * ** * * * **
193353 ACAAGGATTTTGCAGGCATGAGAAACTATAAAGAGACTTTTCCTGTCAATGGATGGAATTGGCTT
63 ATAAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCATTTTCTT
* * * * * * *
193418 CATGTTTGCTAATTCAAACAT-CTAATTATGATCGATTTCAAC
128 CACGTTTCCTCATGCAAACATAC--ATTATTATAG-TTTTAAC
* * ** * * **
193460 CAAAAACA-AAAAATAGTTTTATTTAAGGTCA-CTGATAAGATT-TGAAAA-CAATTTAAAGTGA
1 CAAAAA-AGAAAAA-A-ATTGATTTAAAATCATTTG-TAAAATTAT-AAAATC-ATTTAAAACGA
* * * * *
193521 GTAAGAAAGCTTTTGAAAGCATGAGTGACTATAAATATACTTTTCTTATCAATGGATGGC-TTTT
60 GTAATAAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCATTTT
********** * * *
193585 GCTTCACGTNNNNNNNNNNAAACATCCAATTATGATATGTTGTAAC
125 -CTTCACGTTTCCTCATGCAAACATAC-ATTATTATA-GTTTTAAC
* * * * * * * * * * *
193631 TAAAAATGAAAAATATTTCGATTTAAAATCAATTATAAGATTATTAAACCACTGAAAATGAGTAA
1 CAAAAAAGAAAAA-AATT-GATTTAAAATCATTTGTAAAATTATAAAATCATTTAAAACGAGTAA
* * * * * * * * * * * * *
193696 CAATGCTTTCGAAGGCATGAGTAATTGTAAATGGGCTTATCTTGCCAAAGGATGGCATTTGCTTT
64 TAAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCATTTTCTTC
* * ** * * * *
193761 TCATTTCCAAATGCAAACATCCAATTATGATCGATTTTAAT
129 ACGTTTCCTCATGCAAACATAC-ATTATTATAG-TTTTAAC
* ** * * * *
193802 TAAAAATA-AAAAAGTTTTGATTTAAAATCATTTATAATATTATAAAACCATTTAAAGCGAGTAA
1 CAAAAA-AGAAAAA-AATTGATTTAAAATCATTTGTAAAATTATAAAATCATTTAAAACGAGTAA
* * * * * *
193866 CAATGC-TTTGATGGCATGAGTGACTATAAATGGA-----CTT-T--ATGGATGACATTTGC-TC
64 TAAGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCATTTTCTTC
* * * *
193921 ACATTTTCC-AATGTAAACAT-CATTAATGA-ACGTTTTAAC
129 AC-GTTTCCTCATGCAAACATACATT-ATTATA-GTTTTAAC
* * * * * * * *
193960 TAAAAATGAAAAAAGATTTTTGATTTAAAATTATCTATAAGATTATAAAACCATTTAAAGCGAGT
1 CAAAAAAGAAAAAA-A---TTGATTTAAAATCATTTGTAAAATTATAAAATCATTTAAAACGAGT
* * * *
194025 AACAACGC-TTT-AATGGCATGAGTGACTATAAAT-GAACTTTTCTTATTAATGGATGGC
62 AATAAGGCTTTTGAA-GGCATGAGTGACTATAAATAG-ACTTTTCTTGTCAATGGATGGC
194082 TTCTGCTNNN
Statistics
Matches: 987, Mismatches: 246, Indels: 133
0.72 0.18 0.10
Matches are distributed among these distances:
158 20 0.02
159 6 0.01
160 14 0.01
161 91 0.09
164 3 0.00
165 16 0.02
166 105 0.11
167 17 0.02
168 15 0.02
169 132 0.13
170 101 0.10
171 440 0.45
172 27 0.03
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (167 bp):
CAAAAAAGAAAAAAATTGATTTAAAATCATTTGTAAAATTATAAAATCATTTAAAACGAGTAATA
AGGCTTTTGAAGGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCATTTTCTTCAC
GTTTCCTCATGCAAACATACATTATTATAGTTTTAAC
Found at i:193638 original size:342 final size:340
Alignment explanation
Indices: 193089--193903 Score: 811
Period size: 342 Copynumber: 2.4 Consensus size: 340
193079 GTTTCCTTAA
* * *
193089 GCAAACATCCAATTATGATCGATTTTAACCAAAAATGAAATATA-TTTTGATTTAAGGTTATTAA
1 GCAAACATCCAATTATGATCGATTTTAACCAAAAA-AAAAAATAGTTTTGATTTAAGGTCATTAA
* * * * *
193153 CAAGATTATAAAACCATTTAAAGAGACTAAAAAGGTTTTCAGAAA-TATGAGTGACTATAAATGG
65 TAAGATTATAAAACCATTTAAAGAGAGTAAAAAGCTTTT--GAAAGCATGAGTGACTATAAATAG
* * * *
193217 ACTTTTCTTATCAATGGATGGCTTTAACTTGATGTTTCTTGATGTAAACATCTAATTAACATTTG
128 ACTTTTCTTATCAATGGATGGCTTTAACTTCACGTTTCTTGATGTAAACATCCAATTAACATATG
* * * *
193282 TTTTAACCAAAAATGAAAAAAAATTT-GATCTAAAATCATTTATAAGATTAATAAACTACTGAAC
193 TTGTAACCAAAAATG-AAAAAAATTTCGATCTAAAATCAATTATAAGATTAATAAACCACTGAAA
* * * * *
193346 ACAAGTAACAAGGATTTTGCAGGCATGAGAAACTATAAA-GAGACTTTTCCTGTCAATGGATGGA
257 ACAAGTAACAAGGATTTCGAAGGCATGAGAAACTATAAATG-GACTTATCCTGCCAAAGGATGGA
* *
193410 ATTGGC-TTCATGTTTGCTAAT
321 ATTGGCTTTCA--TTTCCAAAT
* * * * *
193431 TCAAACATCTAATTATGATCGATTTCAACCAAAAACAAAAAATAGTTTT-ATTTAAGGTCACTGA
1 GCAAACATCCAATTATGATCGATTTTAACCAAAAA-AAAAAATAGTTTTGATTTAAGGTCATTAA
* * *
193495 TAAGATT-TGAAAACAATTTAAAGTGAGTAAGAAAGCTTTTGAAAGCATGAGTGACTATAAATAT
65 TAAGATTAT-AAAACCATTTAAAGAGAGTAA-AAAGCTTTTGAAAGCATGAGTGACTATAAATAG
** ********** **
193559 ACTTTTCTTATCAATGGATGGCTTTTGCTTCACGTNNNNNNNNNNAAACATCCAATTATGATATG
128 ACTTTTCTTATCAATGGATGGCTTTAACTTCACGTTTCTTGATGTAAACATCCAATTAACATATG
* * * *
193624 TTGTAACTAAAAATGAAAAATATTTCGATTTAAAATCAATTATAAGATTATTAAACCACTGAAAA
193 TTGTAACCAAAAATGAAAAAAATTTCGATCTAAAATCAATTATAAGATTAATAAACCACTGAAAA
** * * * * * * * *
193689 TGAGTAACAATGCTTTCGAAGGCATGAGTAATTGTAAATGGGCTTATCTTGCCAAAGGATGGCAT
258 CAAGTAACAAGGATTTCGAAGGCATGAGAAACTATAAATGGACTTATCCTGCCAAAGGATGGAAT
*
193754 TTGCTTTTCATTTCCAAAT
323 TGGC-TTTCATTTCCAAAT
** * ** *
193773 GCAAACATCCAATTATGATCGATTTTAATTAAAAATAAAAA-AGTTTTGATTTAAAATCATTTAT
1 GCAAACATCCAATTATGATCGATTTTAACCAAAAAAAAAAATAGTTTTGATTTAAGGTCATTAAT
* * * ** *
193837 AATATTATAAAACCATTTAAAGCGAGTAACAATGC-TTTGATGGCATGAGTGACTATAAATGGAC
66 AAGATTATAAAACCATTTAAAGAGAGTAA-AAAGCTTTTGAAAGCATGAGTGACTATAAATAGAC
193901 TTT
130 TTT
193904 ATGGATGACA
Statistics
Matches: 383, Mismatches: 80, Indels: 22
0.79 0.16 0.05
Matches are distributed among these distances:
340 34 0.09
341 59 0.15
342 273 0.71
343 13 0.03
344 4 0.01
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.33
Consensus pattern (340 bp):
GCAAACATCCAATTATGATCGATTTTAACCAAAAAAAAAAATAGTTTTGATTTAAGGTCATTAAT
AAGATTATAAAACCATTTAAAGAGAGTAAAAAGCTTTTGAAAGCATGAGTGACTATAAATAGACT
TTTCTTATCAATGGATGGCTTTAACTTCACGTTTCTTGATGTAAACATCCAATTAACATATGTTG
TAACCAAAAATGAAAAAAATTTCGATCTAAAATCAATTATAAGATTAATAAACCACTGAAAACAA
GTAACAAGGATTTCGAAGGCATGAGAAACTATAAATGGACTTATCCTGCCAAAGGATGGAATTGG
CTTTCATTTCCAAAT
Found at i:193988 original size:161 final size:163
Alignment explanation
Indices: 193604--194064 Score: 490
Period size: 161 Copynumber: 2.8 Consensus size: 163
193594 NNNNNNNNNN
* * * * *
193604 AAACATCCAATTATGATATG-TTGTAACTAAAAATG-AAAAATATTTCGATTTAAAATCAATTAT
1 AAACATCCAATTATGA-ACGATTTTAACTAAAAATGAAAAAAGATTTTGATTTAAAATCATTTAT
* * * ** * * * *
193667 AAGATTATTAAACCACTGAAAATGAGTAACAATGCTTTCGAAGGCATGAGTAATTGTAAATGGGC
65 AAGATTATAAAACCATTTAAAGCGAGTAACAATGCTTT-GATGGCATGAGTGACTATAAAT-GG-
* * **
193732 TTATCTTGCCAAAGGATGGCATTTGCTTTTCATTTCCAAATGC
127 --A-CTT---TAAGGATGACATTTGCTTCACATTTCCAAATGC
* *
193775 AAACATCCAATTATGATCGATTTTAATTAAAAAT-AAAAAAG-TTTTGATTTAAAATCATTTATA
1 AAACATCCAATTATGAACGATTTTAACTAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATA
*
193838 ATATTATAAAACCATTTAAAGCGAGTAACAATGCTTTGATGGCATGAGTGACTATAAATGGACTT
66 AGATTATAAAACCATTTAAAGCGAGTAACAATGCTTTGATGGCATGAGTGACTATAAATGGACTT
* *
193903 TATGGATGACATTTGC-TCACATTTTCC-AATGT
131 TAAGGATGACATTTGCTTCACA-TTTCCAAATGC
* *
193935 AAACAT-C-ATTAATGAACG-TTTTAACTAAAAATGAAAAAAGATTTTTGATTTAAAATTATCTA
1 AAACATCCAATT-ATGAACGATTTTAACTAAAAATGAAAAAAGA-TTTTGATTTAAAATCATTTA
* * *
193997 TAAGATTATAAAACCATTTAAAGCGAGTAACAACGCTTTAATGGCATGAGTGACTATAAATGAAC
64 TAAGATTATAAAACCATTTAAAGCGAGTAACAATGCTTTGATGGCATGAGTGACTATAAATGGAC
194062 TTT
129 TTT
194065 TCTTATTAAT
Statistics
Matches: 252, Mismatches: 31, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
158 16 0.06
159 14 0.06
160 13 0.05
161 100 0.40
164 3 0.01
165 1 0.00
168 2 0.01
169 18 0.07
170 52 0.21
171 33 0.13
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.34
Consensus pattern (163 bp):
AAACATCCAATTATGAACGATTTTAACTAAAAATGAAAAAAGATTTTGATTTAAAATCATTTATA
AGATTATAAAACCATTTAAAGCGAGTAACAATGCTTTGATGGCATGAGTGACTATAAATGGACTT
TAAGGATGACATTTGCTTCACATTTCCAAATGC
Found at i:195580 original size:170 final size:161
Alignment explanation
Indices: 195284--195605 Score: 306
Period size: 170 Copynumber: 1.9 Consensus size: 161
195274 AAATTGATTT
* * * * ** *
195284 AAAATCATTTATAAGATTTTTAAACCATTGAAAATGAGTTACAAGTTTTTCGAAGGCGTGAATGA
1 AAAATCACTTATAAGATTATAAAACCATTGAAAATGAGTAACAAGTCCTTCGAAGGCATGAATGA
* * * ** * *
195349 CTATAAATAGACTTTGCTTGTCAATGGATGGCTTTGACTTCACATTTCCTAATACAAAAATCCAA
66 ATATAAATAGACTTTGCTTGTCAATGGATAGCATCCACTTCACATTTCCCAATAAAAAAATCCAA
*
195414 TTATGATCTAA-TTTGGCCAAAAATGAAAATG
131 TTATGAT-TAATTTTAGCCAAAAATGAAAATG
* * * *
195445 ANNNNNNNNNNAAATCACTTATAAGATTATAAAACTATTTAAAGTGAGTAACAA-TCCTTCGATG
1 A----------AAATCACTTATAAGATTATAAAACCATTGAAAATGAGTAACAAGTCCTTCGAAG
* * ** *
195509 GCATGAGTGAATATAAATAGACTTTTCTTGTCAATGGATAGCATCCACTTCATGTTTCCCCATAA
56 GCATGAATGAATATAAATAGACTTTGCTTGTCAATGGATAGCATCCACTTCACATTTCCCAATAA
*
195574 AAAAATCCAGTTATGATTAATTTTAGCCAAAA
121 AAAAATCCAATTATGATTAATTTTAGCCAAAA
195606 CAAAGAAGAT
Statistics
Matches: 125, Mismatches: 25, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
161 1 0.01
169 3 0.02
170 85 0.68
171 36 0.29
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.32
Consensus pattern (161 bp):
AAAATCACTTATAAGATTATAAAACCATTGAAAATGAGTAACAAGTCCTTCGAAGGCATGAATGA
ATATAAATAGACTTTGCTTGTCAATGGATAGCATCCACTTCACATTTCCCAATAAAAAAATCCAA
TTATGATTAATTTTAGCCAAAAATGAAAATG
Found at i:195804 original size:167 final size:167
Alignment explanation
Indices: 195617--195979 Score: 417
Period size: 167 Copynumber: 2.2 Consensus size: 167
195607 AAAGAAGATT
* ** *
195617 TTGATTTAAAATCATTTATAAGATTATAAGACCT-TTGAAAGCGGGTAACAAGGCTTTCAAAGGC
1 TTGATTTAAAATCATTTATAAGATTATAA-AACTATTGAAAGCGACTAACAAGACTTTCAAAGGC
* * *
195681 ATGATTAACTATAAATGAAATTT-TTTTGTTAATGAAAGCCTTTCGCTTCATCTTTCCCAATGCA
65 ATAAGTAACTATAAATG-AATTTGTTTTGTCAATGAAAGCCTTTCGCTTCATCTTTCCCAATGCA
* *
195745 AACATCCAATTATGA-TAATTAAACCAAAAATGAAAAAAA
129 AACATCAAATTATAACTAATTAAACCAAAAATG-AAAAAA
* * * * *
195784 TTGATTTAAAATCATTTATAAGATTACAAAACTATTTAAAGTGACTAACTAGACTTTCGAAGGCA
1 TTGATTTAAAATCATTTATAAGATTATAAAACTATTGAAAGCGACTAACAAGACTTTCAAAGGCA
* * * * *
195849 TAAGTGACTATAAATGGATTTGTTTTGTCAATGGATGCCTTTCGCTTCATGTTTCCCAATGCAAA
66 TAAGTAACTATAAATGAATTTGTTTTGTCAATGAAAGCCTTTCGCTTCATCTTTCCCAATGCAAA
* ** * *
195914 TATCAAATTATAATCTGCTTTAACTAAAAATGAAAAAA
131 CATCAAATTATAA-CTAATTAAACCAAAAATGAAAAAA
* * *
195952 TTCAATTTAAAATCATTGACAAGATTAT
1 TT-GATTTAAAATCATTTATAAGATTAT
195980 CAAATCACTT
Statistics
Matches: 163, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
166 7 0.04
167 114 0.70
168 8 0.05
169 34 0.21
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (167 bp):
TTGATTTAAAATCATTTATAAGATTATAAAACTATTGAAAGCGACTAACAAGACTTTCAAAGGCA
TAAGTAACTATAAATGAATTTGTTTTGTCAATGAAAGCCTTTCGCTTCATCTTTCCCAATGCAAA
CATCAAATTATAACTAATTAAACCAAAAATGAAAAAA
Found at i:196948 original size:171 final size:171
Alignment explanation
Indices: 196346--197007 Score: 583
Period size: 171 Copynumber: 3.9 Consensus size: 171
196336 NNNNNNNNTC
* * * * * ** * *
196346 GAAGGCATGAGTGACTATAAATTGACTTTTCGTATCAATGGATGGCATTCGCTTCATATGTCCAT
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCATTCACTTCACGT-TTCTT
* * * * * * * * ** * *
196411 CA-GGAAACATTCAATTATGATGGATTTTATC-AAAAATCAAAATAATTTTTGATTAAAAATCGT
65 AATGCAAATATCCAATTATGATTGATTTTAACTAAAAATGAAAA-AAATTTCAATTTAAAATCAT
* * * *
196474 TTATAAGATTATAAAACTATTTAAAGTGAATAACTAGGCTTTT
129 TTATAAGATTATAAAACCATTTAAAATGAGTAACAAGGCTTTT
* * * * * *
196517 TAAAGAATGGGTGACTATAAATGGACTTTTCTTGTCTAGT-GATGGCTTTCACTTCACGTTTCTT
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGT-TAATGGATGGCATTCACTTCACGTTTCTT
* *
196581 AATGCAAACAT-CAATTATGATATG-TTTTAACTAAAAATG-AAAAAA-TTCAATTAAAAATCAT
65 AATGCAAATATCCAATTATGAT-TGATTTTAACTAAAAATGAAAAAAATTTCAATTTAAAATCAT
** ** *
196642 TTATAAGATTATAAATTCATTTAAAACAAGTAACAAGGCTTTA
129 TTATAAGATTATAAAACCATTTAAAATGAGTAACAAGGCTTTT
* * * ** * * **
196685 GAAGGCATGAGTAATTATAAATTGACTTTTCTACTTAATGG-TGGCATTCACTTTACATTTCCCA
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCATTCACTTCACGTTTCTTA
* * * **
196749 ATGC-AATCATCTAACTGTGAGGGATTTTAAAC-AAAAATGAAAAACAATTTCAATTTAAAATCA
66 ATGCAAAT-ATCCAATTATGATTGATTTT-AACTAAAAATGAAAAA-AATTTCAATTTAAAATCA
* *
196812 TTTATAAAATCATAAAACCATTTAAAATGAGTAACAAGGCTTTT
128 TTTATAAGATTATAAAACCATTTAAAATGAGTAACAAGGCTTTT
* * * * *
196856 GATGGCATGAGTGGCTATAAAAGGACTTTTCTTGTTAATGGAT-GCATCCACTTCACGTTTCTTG
1 GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCATTCACTTCACGTTTCTTA
* * ** *
196920 ATGCAAATATCCAATTATAATTGATTTTAACTAAAAAT-AAAAATGATTTTGATTTCAAATCATT
66 ATGCAAATATCCAATTATGATTGATTTTAACTAAAAATGAAAAA-AATTTCAATTTAAAATCATT
*
196984 TATAAGATTATAAAACTATTTAAA
130 TATAAGATTATAAAACCATTTAAA
197008 GTAAGNNNNN
Statistics
Matches: 386, Mismatches: 90, Indels: 31
0.76 0.18 0.06
Matches are distributed among these distances:
166 2 0.01
167 28 0.07
168 91 0.24
169 9 0.02
170 70 0.18
171 180 0.47
172 6 0.02
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.35
Consensus pattern (171 bp):
GAAGGCATGAGTGACTATAAATGGACTTTTCTTGTTAATGGATGGCATTCACTTCACGTTTCTTA
ATGCAAATATCCAATTATGATTGATTTTAACTAAAAATGAAAAAAATTTCAATTTAAAATCATTT
ATAAGATTATAAAACCATTTAAAATGAGTAACAAGGCTTTT
Found at i:200800 original size:340 final size:337
Alignment explanation
Indices: 200425--202206 Score: 962
Period size: 340 Copynumber: 5.2 Consensus size: 337
200415 AATTGTTTGC
* * * * * * * *
200425 AAGATTATAAAACTATTTTAAAA-GAGTAGCTAGGCTTTCGAAGGTATAAGTGACTACAAATAAA
1 AAGATTATAAAACCA-TTTAAAATAAGTAACAAGGCTTTCAAAGGCATAAGTGACTATAAATGAA
** *
200489 CTTTTCTTGTCAATGGATGGCTTTGGCTTCATATTTCCTAATGTAAACATCAAATTATGATCTGT
65 CTTTTCTTGTCAATGGATAACTTTGGCTTCATATTTCCTAATGCAAACATCAAATTATGATCTGT
* * * * *
200554 TTGAACCAAAAATAAAAAAAATCAATTTAAAATCATTTCTAAGATTATAAAACCACTGAAAGCAT
130 TTTAA-CAAAAATAAAAAAAATCGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCAA
* * * * * * *
200619 GCAATAAGTCTTTCTAAGACATGAGTGACTATAACTCAACTTT-TTTACTCAATGGATGGCATTT
194 GTAACAAGTCTTT-TAAGGCATGAATGACTATAAAT-AACTTTACTT-GTCAATGGATGGCATTT
* * * * ****
200683 GCTTCATGTTTCTTAATGCAAAGATTCAACTT-TGAGGGCTTTTAACCAAAAATGAAAATGATTT
256 ACTTCATGTTTCTAAATGCAAAAATCCAA-TTATGACCAATTTTAACCAAAAATGAAAATGATTT
200747 TGATTTAAAATCATTTAT
320 TGATTTAAAATCATTTAT
* * ** *
200765 AAGATTATAAAACTATTTAAAATAAGTAACTAGGCTTTCAGTGGCATGAAG-GACTATAAATGGA
1 AAGATTATAAAACCATTTAAAATAAGTAACAAGGCTTTCAAAGGCAT-AAGTGACTATAAATGAA
* * * * * ** * * *
200829 CATTTCATT-TAAATGGACATCATAT-GCTTCATGGTTCCAAATGCAAACATCCAATTATG-TTT
65 CTTTTC-TTGTCAATGGATAAC-TTTGGCTTCATATTTCCTAATGCAAACATCAAATTATGATCT
* * * * *
200891 GATTTTAATAAAAATTGAAAAAGATCTTGATTTAAAATCATTTATAAGATTATTAAACCATTTAA
128 G-TTTTAACAAAAA-TAAAAAAAATC--GATTTAAAATCATTTATAAGATTATAAAACCACTTAA
* * ** * * *
200956 AGTAAGTAACAAGGCTTTTTGTGGCATGACTGACTATAAATATCCTTTCCTTGTCAATGGATGGC
189 AGCAAGTAACAAGTC-TTTTAAGGCATGAATGACTATAAATA-ACTTTACTTGTCAATGGATGGC
* * * * * * * * *
201021 ATCTACTCCAT-ATTCCAAATACAAAAATCCAATTATAATCAATTTAAACAAAAAATGAAAAAT-
252 ATTTACTTCATGTTTCTAAATGCAAAAATCCAATTATGACCAATTTTAACCAAAAATG-AAAATG
* *
201084 ATTTTGATTTAAAATCAGTTCT
316 ATTTTGATTTAAAATCATTTAT
* * * ** *
201106 ATGATTATTAAGCCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGAC-ATAAATGAAC
1 AAGATTATAAAACCATTTAAAATAAGTAACAAGGCTTTCAAAGGCATAAGTGACTATAAATGAAC
* * * * * *
201170 TTTTCTTGTTAATGTATAACTTTGGCTTCATGTTTCCTAATGTAAACATCCAATTATGATTTGTT
66 TTTTCTTGTCAATGGATAACTTTGGCTTCATATTTCCTAATGCAAACATCAAATTATGATCTG-T
* * * * * * **
201235 TTTACCATACATAAAAAAATTTTGACTTAAAATCATTTATAAGATTATTCAACCACTTAAAGCAA
130 TTTAACAAAAATAAAAAAA-ATCGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCAA
* *
201300 GTAACAAGGT-TTTTGAAGGTATGAATGACTATAAATGGACTTTACTTGTCAATGGAT-GCAATT
194 GTAACAA-GTCTTTT-AAGGCATGAATGACTATAAAT-AACTTTACTTGTCAATGGATGGC-ATT
** * * * * * *
201363 CCCTTCATGTTTCTCAATGCAAATATCCAATTATGACTAATTTTAA-CAGAAACTAAAAAAGATT
255 TACTTCATGTTTCTAAATGCAAAAATCCAATTATGACCAATTTTAACCA-AAAATGAAAATGATT
*
201427 TTGATTTAAAATCATTTTT
319 TTGATTTAAAATCATTTAT
* * * * * * * *
201446 AAGATTATAAGACCATTTAAAGTGAGTAACAAAGCTTTCAAAAGCATGACTGACTAGAAATGGAA
1 AAGATTATAAAACCATTTAAAATAAGTAACAAGGCTTTCAAAGGCATAAGTGACTATAAAT-GAA
* * ** * * * * * *
201511 -TTTTTTTATCAATGGATGCCTTTTGTTTCACATTT-CTCAATGCAAACTTTCAAGTT-TTA-CT
65 CTTTTCTTGTCAATGGATAACTTTGGCTTCATATTTCCT-AATGCAAAC-ATCAAATTATGATCT
* * * *
201572 AGTTTTAACAAAATATGAAAAAAAT-GATTTAAAATAATTTCTAAGATTATAAAACCATTTAAAG
128 -GTTTTAACAAAA-ATAAAAAAAATCGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAG
* ** * * * * * * * * *
201636 CGAGTAATTAGGCTTTCAAAGGTATGAGTAATTATAAATGGACTTTCCTTGTCAATGGATGGCTT
191 CAAGTAACAAGTCTTT-TAAGGCATGAATGACTATAAAT-AACTTTACTTGTCAATGGATGGCAT
* * * ** ** * * * * * * *
201701 TTGCTTTACGTTTCTCGATGCAAGCATCAAATTTTGA-CATGTTTTAACTAAGAAT-AAAA-AAA
254 TTACTTCATGTTTCTAAATGCAAAAATCCAATTATGACCA-ATTTTAACCAAAAATGAAAATGAT
* ** *
201763 CTCAATTTAAAATTATTTAT
318 TTTGATTTAAAATCATTTAT
* * * * * * * * *
201783 AAGCTTACAAAACTACTTAAAGTGAGTAAAAAGGC-TTCTAAAGGCATGAGTGACTATAAATCAA
1 AAGATTATAAAACCATTTAAAATAAGTAACAAGGCTTTC-AAAGGCATAAGTGACTATAAATGAA
* * ** * *** * **
201847 -TAATTCTTGTCAATAGATGGCATCT-GCTTCACGCTTCCTAGTGCAAACATTC-AATTAT-AAG
65 CT-TTTCTTGTCAATGGATAAC-TTTGGCTTCATATTTCCTAATGCAAACA-TCAAATTATGATC
* * * ** * * * *
201908 GGATTTCAACTAAAACTGAAAAAGATTTTGATTTAAAAAT-ATTTATAAGATTATTAAATCATTT
127 TG-TTTTAAC-AAAAAT-AAAAA-AAATCGATTT-AAAATCATTTATAAGATTATAAAACCACTT
*** * * * * * * * *
201972 AAAATGAGTAATAAGGCTTTTGATGGCATCAGTGACTATAAATGGACTTTTCTTCTCAATGGATG
187 AAAGCAAGTAACAAGTCTTTT-AAGGCATGAATGACTATAAAT-AACTTTACTTGTCAATGGATG
* * * * * * * *** * * *
202037 GCATTCATTTCACATG-TCCCAAA-ACAAACATCCAATTATAATTGATTCTATCAAAAAATGAAA
250 GCATTTACTT--CATGTTTCTAAATGCAAAAATCCAATTATGACCAATTTTAACCAAAAATGAAA
* * * * *
202100 AAGATTATAATTTAAAACCATTAAT
313 ATGATTTTGATTTAAAATCATTTAT
* ** * * * * *
202125 AAGATTATCAAACCATTTAAAGCAAGTAATAAGACTTT-AGATA-GCATGAGTGAATATCAATGA
1 AAGATTATAAAACCATTTAAAATAAGTAACAAGGCTTTCA-A-AGGCATAAGTGACTATAAATGA
*
202188 CCTTTTCTTGTCAATGGAT
64 ACTTTTCTTGTCAATGGAT
202207 GGCATTTGCT
Statistics
Matches: 1105, Mismatches: 278, Indels: 116
0.74 0.19 0.08
Matches are distributed among these distances:
336 11 0.01
337 103 0.09
338 24 0.02
339 231 0.21
340 382 0.35
341 174 0.16
342 171 0.15
343 9 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.35
Consensus pattern (337 bp):
AAGATTATAAAACCATTTAAAATAAGTAACAAGGCTTTCAAAGGCATAAGTGACTATAAATGAAC
TTTTCTTGTCAATGGATAACTTTGGCTTCATATTTCCTAATGCAAACATCAAATTATGATCTGTT
TTAACAAAAATAAAAAAAATCGATTTAAAATCATTTATAAGATTATAAAACCACTTAAAGCAAGT
AACAAGTCTTTTAAGGCATGAATGACTATAAATAACTTTACTTGTCAATGGATGGCATTTACTTC
ATGTTTCTAAATGCAAAAATCCAATTATGACCAATTTTAACCAAAAATGAAAATGATTTTGATTT
AAAATCATTTAT
Found at i:201114 original size:170 final size:170
Alignment explanation
Indices: 200730--201485 Score: 491
Period size: 170 Copynumber: 4.4 Consensus size: 170
200720 GCTTTTAACC
* * *
200730 AAAAATG-AAAATGATTTTGATTTAAAATCATTTATAAGATTATAAAACTATTTAAAATAAGTAA
1 AAAAATGAAAAAT-ATTTTGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGTAAGTAA
* * * *
200794 CTAGGCTTTCAGTGGCATGAAGGACTATAAATGGACATTTCATTTAAATGGACATCATATGCTTC
65 CAAGGCTTTCAGTGGCATGAAGGACTATAAAT-GACATTTCATTTAAATGGACAGCATATACTCC
* * * ** ** * *
200859 ATGGTTCCAAATGCAAACATCCAATTATGTTTGATTTTAATA
129 ATGATTCCAAATACAAAAATCCAATTATAATCAATTTAAACA
* * *
200901 AAAATTGAAAAAGATCTTGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGTAAGTAAC
1 AAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGTAAGTAAC
** ** * * * ** *
200966 AAGGCTTTTTGTGGCATGACTGACTATAAAT-ATCCTTTCCTTGTCAATGGATGGCATCTACTCC
66 AAGGCTTTCAGTGGCATGAAGGACTATAAATGA-CATTTCATT-TAAATGGACAGCATATACTCC
201030 AT-ATTCCAAATACAAAAATCCAATTATAATCAATTTAAACA
129 ATGATTCCAAATACAAAAATCCAATTATAATCAATTTAAACA
* * * * *
201071 AAAAATGAAAAATATTTTGATTTAAAATCAGTTCTATGATTATTAAGCCATTTAAAGCAAGTAAC
1 AAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGTAAGTAAC
** * * * * * * *
201136 AAGGCTTTCAAAGGCATG-AGTGAC-ATAAATGAACTTTTC-TTGTTAATGTATAAC-TTTGGCT
66 AAGGCTTTCAGTGGCATGAAG-GACTATAAATG-ACATTTCATT-TAAATGGACAGCATAT-ACT
* * * ** * * *** ** *
201197 TCATGTTTCCTAATGTAAACATCCAATTATGATTTGTTTTTACC
127 CCATGATTCCAAATACAAAAATCCAATTATAATCAATTTAAACA
* * * * * * *
201241 ATACAT-AAAAAAATTTTGACTTAAAATCATTTATAAGATTATTCAACCACTTAAAGCAAGTAAC
1 AAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGTAAGTAAC
** * * * * * *
201305 AAGG-TTTTTGAAGGTATGAATGACTATAAATGGAC-TTT-ACTTGTCAATGGA-TGCA-ATTCC
66 AAGGCTTTCAG-TGGCATGAAGGACTATAAAT-GACATTTCA-TT-TAAATGGACAGCATA-T-A
* * * * * *
201365 CTTCATGTTTCTC-AATGCAAATATCCAATTATGA-CTAATTTTAACA
125 CTCCATGATTC-CAAATACAAAAATCCAATTATAATC-AATTTAAACA
* * * * * *
201411 GAAACTAAAAAAGATTTTGATTTAAAATCATTTTTAAGATTA-TAAGACCATTTAAAGTGAGTAA
1 AAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGATTATTAA-ACCATTTAAAGTAAGTAA
*
201475 CAAAGCTTTCA
65 CAAGGCTTTCA
201486 AAAGCATGAC
Statistics
Matches: 458, Mismatches: 106, Indels: 41
0.76 0.18 0.07
Matches are distributed among these distances:
168 5 0.01
169 90 0.20
170 206 0.45
171 150 0.33
172 7 0.02
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (170 bp):
AAAAATGAAAAATATTTTGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGTAAGTAAC
AAGGCTTTCAGTGGCATGAAGGACTATAAATGACATTTCATTTAAATGGACAGCATATACTCCAT
GATTCCAAATACAAAAATCCAATTATAATCAATTTAAACA
Found at i:201509 original size:171 final size:171
Alignment explanation
Indices: 200006--202207 Score: 914
Period size: 171 Copynumber: 13.0 Consensus size: 171
199996 ATGGCTTCTA
* * * * * * *
200006 CTTCATATTTCCCAATGCAAACACCCAATTAT-AATATGTTTTAACCAAAAA-T-GAAAAGCAAT
1 CTTCATGTTTCCAAATGCAAACATCCAATTATGACTA-ATTTTAA-CAAAAACTAAAAAAG-ATT
* * * ** * * ** **
200068 ATGATTTAATATCATTTATAAGATTATTAAACTACGTAAAGCGAGTAACAAGACTTTTGAAGATA
63 TTGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCA
* * ** * *
200133 TGAGTGACTATAAATAGAC-TT--TTGT-TGTGAATGC-ATTTG
128 TGAATGACTATAAATGGACTTTCCTTGTCAATGGATGCAATTCG
* * * * * * *
200172 CTTCATATTTCCTAATGTAAACATCCAATTACGATTAATTTTAACTAAAAAC-AAAGAATATTTT
1 CTTCATGTTTCCAAATGCAAACATCCAATTATGACTAATTTTAAC-AAAAACTAAAAAAGATTTT
********** ** *
200236 GATTTAAAATCATTTATANNNNNNNNNNGACCATTTAAAGGGAGTGACAAGGCTTTCAAAGGCAT
65 GATTTAAAATCATTTATA-AGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCAT
* * * * * * ** *
200301 -AGCTAACTATAAATGTAATTTTCTTGTCAATGGATTCCTTTCA
129 GA-ATGACTATAAATGGACTTTCCTTGTCAATGGATGCAATTCG
* * * * * * * * * *
200344 CTTGAAGTTTCCCAATGCAAATATCAAATTATGA-TAAGTTTTAACTTAAAA-TGAATAATAATT
1 CTTCATGTTTCCAAATGCAAACATCCAATTATGACTAA-TTTTAAC-AAAAACTAAAAAAGATTT
** * * ** ** * * * * * *
200407 CCACTGAAAATTGTTTGCAAGATTATAAAACTATTTTAAA--AGAGTAGCTAGGCTTTCGAAGGT
64 TGATTTAAAATCATTTATAAGATTATTAAACCA-TTTAAAGCA-AGTAACAAGGCTTTCAAAGGC
* ** * * *
200470 AT-AAGTGACTACAAATAAACTTTTCTTGTCAATGGATGGC-TTTGG
127 ATGAA-TGACTATAAATGGACTTTCCTTGTCAATGGAT-GCAATTCG
* * * * * * *
200515 CTTCATATTTCCTAATGTAAACATCAAATTATGATCT-GTTTGAACCAAAAA-TAAAAAA-A-AT
1 CTTCATGTTTCCAAATGCAAACATCCAATTATGA-CTAATTTTAA-CAAAAACTAAAAAAGATTT
** * * * * * * * * * *
200576 CAATTTAAAATCATTTCTAAGATTATAAAACCACTGAAAGCATGCAATAAGTCTTTCTAAGACAT
64 TGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCAT
* * ** * * *
200641 GAGTGACTATAACTCAACTTT-TTTACTCAATGGATGGC-ATTTG
129 GAATGACTATAAATGGACTTTCCTT-GTCAATGGAT-GCAATTCG
** * * **** * *
200684 CTTCATGTTTCTTAATGCAAAGATTCAACTT-TGAGGGCTTTTAACCAAAAA-TGAAAATGATTT
1 CTTCATGTTTCCAAATGCAAACATCCAA-TTATGACTAATTTTAA-CAAAAACTAAAAAAGATTT
* * ** * **
200747 TGATTTAAAATCATTTATAAGATTATAAAACTATTTAAAATAAGTAACTAGGCTTTCAGTGGCAT
64 TGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCAT
* * *
200812 GAAGGACTATAAATGGACATTTCATT-TAAATGGA--CATCATAT-G
129 GAATGACTATAAATGGAC-TTTCCTTGTCAATGGATGCA--AT-TCG
* ** * * * * *
200855 CTTCATGGTTCCAAATGCAAACATCCAATTATGTTTGATTTTAATAAAAATTGAAAAAGATCTTG
1 CTTCATGTTTCCAAATGCAAACATCCAATTATGACTAATTTTAACAAAAACTAAAAAAGATTTTG
* ****
200920 ATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGTAAGTAACAAGGCTTTTTGTGGCATGA
66 ATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATGA
* *** *
200985 CTGACTATAAATATCCTTTCCTTGTCAATGGATGGC-A-TCTA
131 ATGACTATAAATGGACTTTCCTTGTCAATGGAT-GCAATTC-G
* * * * * * * * *
201026 CTCCAT-ATTCCAAATACAAAAATCCAATTAT-AATCAATTTAAACAAAAAATGAAAAATATTTT
1 CTTCATGTTTCCAAATGCAAACATCCAATTATGACT-AATTTTAACAAAAACTAAAAAAGATTTT
* * * *
201089 GATTTAAAATCAGTTCTATGATTATTAAGCCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATG
65 GATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATG
* * * * * *
201154 AGTGAC-ATAAATGAACTTTTCTTGTTAATGTAT--AACTTTGG
130 AATGACTATAAATGGACTTTCCTTGTCAATGGATGCAA--TTCG
* * * ** * * *
201195 CTTCATGTTTCCTAATGTAAACATCCAATTATGATTTGTTTTTAC-CATACATAAAAAA-ATTTT
1 CTTCATGTTTCCAAATGCAAACATCCAATTATGACTAATTTTAACAAAAAC-TAAAAAAGATTTT
* * * * ** *
201258 GACTTAAAATCATTTATAAGATTATTCAACCACTTAAAGCAAGTAACAAGGTTTTTGAAGGTATG
65 GATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATG
* *
201323 AATGACTATAAATGGACTTTACTTGTCAATGGATGCAATTCC
130 AATGACTATAAATGGACTTTCCTTGTCAATGGATGCAATTCG
* *
201365 CTTCATGTTTCTC-AATGCAAATATCCAATTATGACTAATTTTAACAGAAACTAAAAAAGATTTT
1 CTTCATGTTTC-CAAATGCAAACATCCAATTATGACTAATTTTAACAAAAACTAAAAAAGATTTT
* ** * *
201429 GATTTAAAATCATTTTTAAGATTA-TAAGACCATTTAAAGTGAGTAACAAAGCTTTCAAAAGCAT
65 GATTTAAAATCATTTATAAGATTATTAA-ACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCAT
* * * ** * ** *
201493 GACTGACTAGAAATGGAATTTTTTTATCAATGGATGCCTTTTG
129 GAATGACTATAAATGGACTTTCCTTGTCAATGGATGCAATTCG
* ** * * * *
201536 TTTCACATTTCTC-AATGCAAACTTTCAAGTT-TTACTAGTTTTAACAAAATA-TGAAAAAA-A-
1 CTTCATGTTTC-CAAATGCAAACATCCAA-TTATGACTAATTTTAACAAAA-ACT-AAAAAAGAT
* * * * ** *
201596 --TGATTTAAAATAATTTCTAAGATTATAAAACCATTTAAAGCGAGTAATTAGGCTTTCAAAGGT
62 TTTGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGC
* * * * *
201659 ATGAGTAATTATAAATGGACTTTCCTTGTCAATGGATGGC-TTTTG
127 ATGAATGACTATAAATGGACTTTCCTTGTCAATGGAT-GCAATTCG
* * * * * * * * *
201704 CTTTACGTTTCTC-GATGCAAGCATCAAATTTTGAC-ATGTTTTAACTAAGAA-TAAAAAA-A-C
1 CTTCATGTTTC-CAAATGCAAACATCCAATTATGACTA-ATTTTAAC-AAAAACTAAAAAAGATT
** * * ** * * ** *
201764 TCAATTTAAAATTATTTATAAGCTTACAAAACTACTTAAAGTGAGTAAAAAGGC-TTCTAAAGGC
63 TTGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTC-AAAGGC
* * * *
201828 ATGAGTGACTATAAAT-CAATAATT-CTTGTCAATAGATGGC-A-TCTG
127 ATGAATGACTATAAATGGACT--TTCCTTGTCAATGGAT-GCAATTC-G
* * * * * * *** * * *
201873 CTTCACGCTTCCTAGTGCAAACATTCAATTATAAGGGATTTCAACTAAAACTGAAAAAGATTTTG
1 CTTCATGTTTCCAAATGCAAACATCCAATTATGACTAATTTTAACAAAAACTAAAAAAGATTTTG
* *** * ** * *
201938 ATTTAAAAAT-ATTTATAAGATTATTAAATCATTTAAAATGAGTAATAAGGCTTTTGATGGCATC
66 ATTT-AAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATG
* * * *
202002 AGTGACTATAAATGGACTTTTCTTCTCAATGGATGGC-ATTCA
130 AATGACTATAAATGGACTTTCCTTGTCAATGGAT-GCAATTCG
* * * * * * * * * * *
202044 TTTCACATG-TCCCAAA-ACAAACATCCAATTATAATTGATTCTATCAAAAAATGAAAAAGATTA
1 CTT--CATGTTTCCAAATGCAAACATCCAATTATGACTAATTTTAACAAAAACTAAAAAAGATTT
* * * * * *
202107 TAATTTAAAACCATTAATAAGATTATCAAACCATTTAAAGCAAGTAATAAGACTTT-AGATA-GC
64 TGATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCA-A-AGGC
* * * *
202170 ATGAGTGAATATCAAT-GACCTTTTCTTGTCAATGGATG
127 ATGAATGACTATAAATGGA-CTTTCCTTGTCAATGGATG
202208 GCATTTGCTT
Statistics
Matches: 1543, Mismatches: 406, Indels: 170
0.73 0.19 0.08
Matches are distributed among these distances:
165 1 0.00
166 60 0.04
167 54 0.03
168 137 0.09
169 325 0.21
170 243 0.16
171 619 0.40
172 97 0.06
173 6 0.00
174 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (171 bp):
CTTCATGTTTCCAAATGCAAACATCCAATTATGACTAATTTTAACAAAAACTAAAAAAGATTTTG
ATTTAAAATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATGA
ATGACTATAAATGGACTTTCCTTGTCAATGGATGCAATTCG
Found at i:201606 original size:339 final size:336
Alignment explanation
Indices: 200863--201696 Score: 799
Period size: 339 Copynumber: 2.5 Consensus size: 336
200853 TGCTTCATGG
* * * * *
200863 TTCCAAATGCAAACATCCAATTATG-TTTGATTTTAATAAAA-ATTGAAAAAGATCTTGATTTAA
1 TTCCTAATGCAAACATCCAATTATGACTAG-TTTTAACAAAACA-T-AAAAA-A-ATTGATTTAA
* * * *
200926 AATCATTTATAAGATTATTAAACCATTTAAAGTAAGTAACAAGGCTTTTTG-TGGCATGACTGAC
61 AATCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGG-TTTTTGAAGGTATGAATGAC
***
200990 TATAAATATCCTTTCCTTGTCAATGGATGGCATCTACTCCATATTCCAAATACAAAAATCCAATT
125 TATAAATGGACTTTCCTTGTCAATGGAT-GCATCTACTCCATATTCCAAATACAAAAATCCAATT
* * *
201055 ATAATCAATTTAAACAAAAAATGAAAAATATTTTGATTTAAAATCAGTTCTATGATTATTAAGCC
189 ATAATCAATTTAAACAAAAAATAAAAAAGATTTTGATTTAAAATCAGTTCTAAGATTATTAAGCC
* * * * * * *
201120 ATTTAAAGCAAGTAACAAGGCTTTCAAAGGCATGAGTGACATAAATGAACTTTTCTTGTTAATGT
254 ATTTAAAGCAAGTAACAAAGCTTTCAAAAGCATGACTGACAGAAATGAACTTTTCTTATCAATGG
**
201185 ATAACTTTGGCTTCATGT
319 ATAACTTTGGCTTCACAT
* * * * * * *
201203 TTCCTAATGTAAACATCCAATTATGATTTGTTTTTACCATACATAAAAAAATTTTGACTTAAAAT
1 TTCCTAATGCAAACATCCAATTATGACTAGTTTTAACAAAACATAAAAAAA--TTGATTTAAAAT
* *
201268 CATTTATAAGATTATTCAACCACTTAAAGCAAGTAACAAGGTTTTTGAAGGTATGAATGACTATA
64 CATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGTTTTTGAAGGTATGAATGACTATA
* * * * * *
201333 AATGGACTTTACTTGTCAATGGATGCAAT-TCCCTTCATGTTTCTC-AATGCAAATATCCAATTA
129 AATGGACTTTCCTTGTCAATGGATGC-ATCT-ACTCCAT-ATTC-CAAATACAAAAATCCAATTA
* * * * * *
201396 TGA-CTAATTTTAACAGAAACTAAAAAAGATTTTGATTTAAAATCATTTTTAAGATTA-TAAGAC
190 TAATC-AATTTAAACAAAAAATAAAAAAGATTTTGATTTAAAATCAGTTCTAAGATTATTAAG-C
** *
201459 CATTTAAAGTGAGTAACAAAGCTTTCAAAAGCATGACTGACTAGAAATGGAA-TTTTTTTATCAA
253 CATTTAAAGCAAGTAACAAAGCTTTCAAAAGCATGACTGAC-AGAAAT-GAACTTTTCTTATCAA
** * *
201523 TGGATGCCTTTTGTTTCACAT
316 TGGATAACTTTGGCTTCACAT
* * * *
201544 TT-CTCAATGCAAACTTTCAAGTT-TTACTAGTTTTAACAAAATATGAAAAAAA-TGATTTAAAA
1 TTCCT-AATGCAAACATCCAA-TTATGACTAGTTTTAACAAAACAT-AAAAAAATTGATTTAAAA
* * * * ** * ** * * *
201606 TAATTTCTAAGATTATAAAACCATTTAAAGCGAGTAATTAGGCTTTCAAAGGTATGAGTAATTAT
63 TCATTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGTTTTTGAAGGTATGAATGACTAT
201671 AAATGGACTTTCCTTGTCAATGGATG
128 AAATGGACTTTCCTTGTCAATGGATG
201697 GCTTTTGCTT
Statistics
Matches: 404, Mismatches: 74, Indels: 33
0.79 0.14 0.06
Matches are distributed among these distances:
338 10 0.02
339 185 0.46
340 135 0.33
341 62 0.15
342 12 0.03
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.35
Consensus pattern (336 bp):
TTCCTAATGCAAACATCCAATTATGACTAGTTTTAACAAAACATAAAAAAATTGATTTAAAATCA
TTTATAAGATTATTAAACCATTTAAAGCAAGTAACAAGGTTTTTGAAGGTATGAATGACTATAAA
TGGACTTTCCTTGTCAATGGATGCATCTACTCCATATTCCAAATACAAAAATCCAATTATAATCA
ATTTAAACAAAAAATAAAAAAGATTTTGATTTAAAATCAGTTCTAAGATTATTAAGCCATTTAAA
GCAAGTAACAAAGCTTTCAAAAGCATGACTGACAGAAATGAACTTTTCTTATCAATGGATAACTT
TGGCTTCACAT
Found at i:203716 original size:171 final size:168
Alignment explanation
Indices: 203302--203719 Score: 405
Period size: 169 Copynumber: 2.5 Consensus size: 168
203292 GCTTGCATCG
* * * *
203302 AGAAACAT-AAAGCAAAAGCCATCCATTGATAAAGAAAGTCCATTTATGGTTACTCATACCTTCG
1 AGAAACATGAAA-CAAAAGGCATCCATTGA-AAAGAAAGTCTATTTATAGTCACTCATACCTTCG
** * * * * *
203366 AAAGCCTAATTACTCGCTTTAGATGGTTTTATAATCTTATAAATTATTTTAAATCAATTTTTTTC
64 AAAGCCTTGTTACTCGCTTTAAATGGTCTTATAATCTTAAAAATGATTTTAAATCAATTTCTTTC
* *
203431 ATTTTTTGTTAAAACTAGTAAAACTTGAAAGTTTGCATTG
129 AATTTTTGTTAAAACTAGTAAAACTTGAAAGTTTGCATTA
* * * * * ** *
203471 AGAAACGTGAAACAAAAGGCATCCATTGATAAA-AAAATTTCATTTCTAGTCAGTCATATTTTTG
1 AGAAACATGAAACAAAAGGCATCCATTGA-AAAGAAAGTCT-ATTTATAGTCACTCATACCTTCG
203535 AAAGCCTTGTTACTCGCTTTAAATGGTCTTATAATCTTAAAAATGATTTTAAATCAAAATCTTCT
64 AAAGCCTTGTTACTCGCTTTAAATGGTCTTATAATCTTAAAAATGATTTTAAATC--AAT-TTCT
* ** *
203600 TT-AATTTTTGTTAAAATTAGTTGTAA-TTGGATA-TTTGCATTA
126 TTCAATTTTTGTTAAAACTAG-TAAAACTT-GAAAGTTTGCATTA
*** ** * * *
203642 AGAAACATGAAGGGAATTGCATCCATTGACAAGTAAAGTCTATTTATAGTCATTCATACCTTCAA
1 AGAAACATGAAACAAAAGGCATCCATTGAAAAG-AAAGTCTATTTATAGTCACTCATACCTTCGA
*
203707 AAACCTTGTTACT
65 AAGCCTTGTTACT
203720 TTCTTTAAGT
Statistics
Matches: 199, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
168 4 0.02
169 92 0.46
170 5 0.03
171 82 0.41
172 16 0.08
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (168 bp):
AGAAACATGAAACAAAAGGCATCCATTGAAAAGAAAGTCTATTTATAGTCACTCATACCTTCGAA
AGCCTTGTTACTCGCTTTAAATGGTCTTATAATCTTAAAAATGATTTTAAATCAATTTCTTTCAA
TTTTTGTTAAAACTAGTAAAACTTGAAAGTTTGCATTA
Found at i:205068 original size:170 final size:170
Alignment explanation
Indices: 204892--205254 Score: 406
Period size: 171 Copynumber: 2.1 Consensus size: 170
204882 NNNNNNCAAT
* ** * *
204892 ATATTTTTTATTTTGGTTGAAATTGATTATAATTGGATGTTTGTATTAGGAAACATGAAGTAAAT
1 ATATTTTTTATTTTGGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTAAAT
* * * * * *
204957 GCCATCCATTAATAAGAAAAGTATATTTACAGTCACTCATGCCATCAG-AAG-CTATGTTACTCA
66 ACCATCAATTAACAAGAAAAGTACATTTACAATCACTCATGCCAT-AGAAAGCCT-TATTACTCA
* * * *
205020 CTTTAAATGGTTTGATAATCTCATAAATGATTTTGAATCGAA
129 CTTTAAATGATTTGATAATCTCAAAAATGATTTTAAATCAAA
* * * *
205062 ATATTTTTTGTTTTTAGTTAAAATCAATCATAATTGGATGTTTGCATTATGAAACATGAAGTAGA
1 ATATTTTTT-ATTTTGGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTAAA
* * * * * *
205127 TACCATCAATTGACAAGAAAAGTCCATTTATAATTACTCATGCCATTGAAAGCCTTATTACTCAT
65 TACCATCAATTAACAAGAAAAGTACATTTACAATCACTCATGCCATAGAAAGCCTTATTACTCAC
** *
205192 TTTAAATGATTTTTTAATCTTAAAAATGATTTTAAATCAAA
130 TTTAAATGATTTGATAATCTCAAAAATGATTTTAAATCAAA
* *
205233 ATCTTTTTCACTTTTGGTTAAA
1 ATATTTTTTA-TTTTGGTTAAA
205255 GCCCTCACAG
Statistics
Matches: 157, Mismatches: 32, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
170 10 0.06
171 145 0.92
172 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.40
Consensus pattern (170 bp):
ATATTTTTTATTTTGGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTAAAT
ACCATCAATTAACAAGAAAAGTACATTTACAATCACTCATGCCATAGAAAGCCTTATTACTCACT
TTAAATGATTTGATAATCTCAAAAATGATTTTAAATCAAA
Found at i:208632 original size:170 final size:170
Alignment explanation
Indices: 208316--209078 Score: 552
Period size: 170 Copynumber: 4.5 Consensus size: 170
208306 TCACAACAAA
** * * * *
208316 GTCTATTTATAGTCACTCATATCTTCAAAAGTCTTGTTACTCGCTTTAAGTGGTTTAATAATCTT
1 GTCTATTTATAGTCACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAATGGTTTTATAATCTT
* * * *
208381 ATAAATGATATTAAATC-ATAT-TGCTTTTCATTTTTGATTAAAACATATTATAATTGGGTGTTT
66 ATAAATGATTTTAAATCAATATATG-TTTTCA-TTTTGGTTAAAA-TTATTATAATTGGATGTTT
** *
208444 GCATTGGGAAACATGAAGTAGAAGCCATCCTTTGAAAAGAAAC
128 GCATTGGGAAACATGAAGTAGAAGCCATCAATTGATAAGAAAC
* * *
208487 GTCTATTTATAGTCACTCATGCCTTCGAAAAGCCTAGTTACTTC-TTTTAAATGGTTTTATATTC
1 GTCTATTTATAGTCACTCATGCCTTC-AAAAGCCTTGTTAC-TCACTTTAAATGGTTTTATAATC
* *
208551 TTA-AACTGATTTTAAATCAATATATGTTTT-ATTTTGGTTGAAATTGATTATAATTGGATGTTT
64 TTATAAATGATTTTAAATCAATATATGTTTTCATTTTGGTTAAAATT-ATTATAATTGGATGTTT
* ********** *
208614 GCATTGGGAAAAATGAAGTA-AATGCNNNNNNNNNNTAAGAAAA
128 GCATTGGGAAACATGAAGTAGAA-GCCATCAATTGATAAGAAAC
* * * * *
208657 GTAC-ATTTACAGTCACTCATGCCATT-AGAAGCTTTGTTACTCACTTTAAAAGGTTTGATAATC
1 GT-CTATTTATAGTCACTCATGCC-TTCAAAAGCCTTGTTACTCACTTTAAATGGTTTTATAATC
* * * ** * * *
208720 TCATAAATGATTTTGAATCAA-ATATTTTTTGTTTTTAGTTAAAATCAATCATAATTGGATGTTT
64 TTATAAATGATTTTAAATCAATATATGTTTTCATTTTGGTTAAAAT-TATTATAATTGGATGTTT
*
208784 GCATTAGGAAACATGAAGTAGATA-CCATCAATTGATAAGAAAAC
128 GCATTGGGAAACATGAAGTAGA-AGCCATCAATTGATAAG-AAAC
* * * * * *
208828 -TCTATTTATAATTACCCATGCCCTCGAAAA-CCTTGTTACTCATTTTAAATGATTTTATAATCT
1 GTCTATTTATAGTCACTCATGCCTTC-AAAAGCCTTGTTACTCACTTTAAATGGTTTTATAATCT
* * * * *** * *
208891 TATAAATAATTTTAAATCAAAATCT-TTTTCACTTTTAGTTAAAACCCCTCACAATTGGATGTTT
65 TATAAATGATTTTAAATCAATATATGTTTTCA-TTTTGGTTAAAA-TTATTATAATTGGATGTTT
* * * * * * * *
208955 -CTATTAGGAAGCGTCAAGCA-AATGCCATCCATTGAGAAGAAAA
128 GC-ATTGGGAAACATGAAGTAGAA-GCCATCAATTGATAAGAAAC
** * * ** * * *
208998 GT-TGATTTATAGTCACTTGTACATTCGAAAA-CCTTGTTACTTGCATTAAGTAGTTTTATAATC
1 GTCT-ATTTATAGTCACTCATGCCTTC-AAAAGCCTTGTTACTCACTTTAAATGGTTTTATAATC
209061 TTATAAATGATTTTAAAT
64 TTATAAATGATTTTAAAT
209079 TGAACTTTTT
Statistics
Matches: 465, Mismatches: 101, Indels: 52
0.75 0.16 0.08
Matches are distributed among these distances:
168 2 0.00
169 43 0.09
170 209 0.45
171 167 0.36
172 40 0.09
173 4 0.01
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.39
Consensus pattern (170 bp):
GTCTATTTATAGTCACTCATGCCTTCAAAAGCCTTGTTACTCACTTTAAATGGTTTTATAATCTT
ATAAATGATTTTAAATCAATATATGTTTTCATTTTGGTTAAAATTATTATAATTGGATGTTTGCA
TTGGGAAACATGAAGTAGAAGCCATCAATTGATAAGAAAC
Found at i:209008 original size:171 final size:169
Alignment explanation
Indices: 208690--209078 Score: 392
Period size: 171 Copynumber: 2.3 Consensus size: 169
208680 ATTAGAAGCT
* * * * * **
208690 TTGTTACTCACTTTAAAAGGTTTGATAATCTCATAAATGATTTTGAATCAAATATTTTTTGTTTT
1 TTGTTACTCA-TTTAAATGATTTTATAATCTTATAAATGATTTTAAATCAAATATTTTTTACTTT
* * * * * *
208755 TAGTTAAAATCAATCATAATTGGATGTTTGCATTAGGAAACATGAAGTAGATACCATCAATTGAT
65 TAGTTAAAACCAATCACAATTGGATGTTTGCATTAGGAAACATCAAGCAAATACCATCAATTGAG
* * *
208820 AAGAAAACTCTATTTATAATTACCCATGCCCTCGAAAACC
130 AAGAAAACTCTATTTATAATCACCCATACACTCGAAAACC
*
208860 TTGTTACTCATTTTAAATGATTTTATAATCTTATAAATAATTTTAAATCAAA-ATCTTTTTCACT
1 TTGTTACTCA-TTTAAATGATTTTATAATCTTATAAATGATTTTAAATCAAATAT-TTTTT-ACT
** * * * *
208924 TTTAGTTAAAACCCCTCACAATTGGATGTTT-CTATTAGGAAGCGTCAAGCAAATGCCATCCATT
63 TTTAGTTAAAACCAATCACAATTGGATGTTTGC-ATTAGGAAACATCAAGCAAATACCATCAATT
* * *** *
208988 GAGAAGAAAAGT-TGATTTATAGTCACTTGTACATTCGAAAACC
127 GAGAAGAAAACTCT-ATTTATAATCACCCATACACTCGAAAACC
*
209031 TTGTTACTTGCA-TTAAGT-AGTTTTATAATCTTATAAATGATTTTAAAT
1 TTGTTAC-T-CATTTAAATGA-TTTTATAATCTTATAAATGATTTTAAAT
209079 TGAACTTTTT
Statistics
Matches: 180, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
169 2 0.01
170 53 0.29
171 122 0.68
172 1 0.01
173 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (169 bp):
TTGTTACTCATTTAAATGATTTTATAATCTTATAAATGATTTTAAATCAAATATTTTTTACTTTT
AGTTAAAACCAATCACAATTGGATGTTTGCATTAGGAAACATCAAGCAAATACCATCAATTGAGA
AGAAAACTCTATTTATAATCACCCATACACTCGAAAACC
Found at i:212051 original size:14 final size:14
Alignment explanation
Indices: 212032--212063 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
212022 TTGTGAAGAA
212032 AAGGATGGAAGTTT
1 AAGGATGGAAGTTT
212046 AAGGATGGAAGTTT
1 AAGGATGGAAGTTT
212060 AAGG
1 AAGG
212064 TTATGTGTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.25
Consensus pattern (14 bp):
AAGGATGGAAGTTT
Found at i:215599 original size:22 final size:23
Alignment explanation
Indices: 215558--215604 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
215548 AAAAGAAAGA
*
215558 GTGAAACTCACTCTTATTTGCAT
1 GTGAAACTCACTATTATTTGCAT
215581 GTGAAACTCAC-ATTATTTGCAT
1 GTGAAACTCACTATTATTTGCAT
215603 GT
1 GT
215605 AATGTGATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (23 bp):
GTGAAACTCACTATTATTTGCAT
Found at i:217156 original size:25 final size:25
Alignment explanation
Indices: 217122--217178 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
217112 GGTTTGTGAT
217122 ATATACGTGGCAAGGCCAC-AGATTG
1 ATATACGTGGCAAGGCCACAAG-TTG
* *
217147 ATATATGTGGCTAGGCCACAAGTTG
1 ATATACGTGGCAAGGCCACAAGTTG
217172 ATATACG
1 ATATACG
217179 CGGTTATGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 26 0.93
26 2 0.07
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (25 bp):
ATATACGTGGCAAGGCCACAAGTTG
Found at i:220314 original size:171 final size:169
Alignment explanation
Indices: 219933--220365 Score: 448
Period size: 171 Copynumber: 2.5 Consensus size: 169
219923 NNNNNNCTTG
* * * * * *
219933 TTACTCACTTTAAATGGTTTTATAATTTTATAAATGATTTTAGATCAAAAACTTTTTTGTTTTTG
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAAT-TAAAACTTTTTTATTGTTG
* * ** * * * *
219998 GTTAAAATCAATCATAATTTGATGTTTATAATGGGAAACATAAAGCAAATGCCATCTATTGATAA
65 GTTAAAATCAATCATAATTGGATGTTTACAATAAGAAACATAAAGAAAATGCCATCCACTGACAA
*
220063 GAAAGTCTATTTATAGTCACTCATGCTTTCGAAAGCCTTA
130 GAAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTA
* * * *
220103 TTATTCGCTTTAAGT-GTTTTAATAATCATATAAATGATTTTATATTAAAA-TTTTATTCATTGT
1 TTACTCGCTTTAAATGGTTTT-ATAATCTTATAAATGATTTTAAATTAAAACTTTT-TT-ATTGT
* *
220166 TGGTTAAAA-CATATCATAATTGGATGTTTGCATTAAGAAACATAAAGTAAAAT-CCATCCACTG
63 TGGTTAAAATCA-ATCATAATTGGATGTTTACAATAAGAAACATAAAG-AAAATGCCATCCACTG
* *
220229 ACAAGAAAAGTTTATTTATAGTCACTCATGCCTTC-AGAGGCCTTA
126 ACAAG-AAAGTCTATTTATAGTCACTCATGCCTTCGA-AAGCCTTA
* * *
220274 TTACTCGCTTTAAATGGTTATATAATCTTATAACTGATTTTAAATTAAATTA-TTTCTTT-TTTT
1 TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTAAA--ACTTT-TTTATTGT
* ** *
220337 TGGTTGAAATTGATCTTAATTGGATGTTT
63 TGGTTAAAATCAATCATAATTGGATGTTT
220366 CCATCAGTAA
Statistics
Matches: 218, Mismatches: 33, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
168 4 0.02
169 13 0.06
170 87 0.40
171 103 0.47
172 4 0.02
173 6 0.03
174 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.42
Consensus pattern (169 bp):
TTACTCGCTTTAAATGGTTTTATAATCTTATAAATGATTTTAAATTAAAACTTTTTTATTGTTGG
TTAAAATCAATCATAATTGGATGTTTACAATAAGAAACATAAAGAAAATGCCATCCACTGACAAG
AAAGTCTATTTATAGTCACTCATGCCTTCGAAAGCCTTA
Found at i:221677 original size:171 final size:171
Alignment explanation
Indices: 221146--222074 Score: 620
Period size: 171 Copynumber: 5.4 Consensus size: 171
221136 AATGACATTT
* * * * **
221146 GCTTCACGCTTCCCAATACAAACATCCAATTATGAG-AGATTTTAA--AAAAA-G-AAAACGATT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGAGTCG-TTTTAACCAAAAATGAAAAAATATT
* * * * * * * * *
221206 TTGATTTAAAA-TCATATATAAGATTATAAAACCATTTAAAATGAGTAAGAATGCTTTTTATGGT
65 TTGATTTAAAATTAAT-TATAAGATTATATAACTATTTAAAGTGAGTAACAAGGCTTTTGAAGGC
* * *
221270 ATTCA-TGACTATAAATGGACTTTTCTTGTCAATGGATGGCATCC
129 A-TGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC-TTC
* ** ** * * * **********
221314 ACTTCAAATTTATCAATGCAAACATCCAATTATGA-TTGATTTCANNNNNNNNNNAAAAATATTT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGAGTCGTTTTAACCAAAAATGAAAAAATATTT
* * * * * *
221378 TGCTTTAAAATTATTTATAAGAGTATCA-AACTATTTAAAGTGAGTAATAAGGTTTTTGATGGCA
66 TGATTTAAAATTAATTATAAGATTAT-ATAACTATTTAAAGTGAGTAACAAGGCTTTTGAAGGCA
* * * * *
221442 TGAGTGGCTATAAATAGAATTTTTTTCTCAATGGATGGCATTT
130 TGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC-TTC
********** * *
221485 GCTTCNNNNNNNNNNATGCAAACATCCAATTATGA-TCGATTTCAACCAAAAA-CAAAAAATATT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGAGTCG-TTTTAACCAAAAATGAAAAAATATT
* * * ** *
221548 TTGATTTAAAATTAGTTACAAGATTATATAACCATTTAAAACGAGTAACAAGGC-TTTAAGAGGC
65 TTGATTTAAAATTAATTATAAGATTATATAACTATTTAAAGTGAGTAACAAGGCTTTTGA-AGGC
* * * * * *
221612 ATGAGCGACTACAAATAGATTTTTGTTATCAATGGATGCCTTTC
129 ATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC-TTC
* * * * * ** *
221656 GCTTCATGTTTCCCAATGCAAATATCTAATTATCATTTGTTTTAATGAAAAATGAAAAAA-ATAT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGAGTCGTTTTAACCAAAAATGAAAAAATATTT
* * * *
221720 CGATTTAAAATTAATTATAAGATTATAAAACTATTTAAAGTGAGCAACTAGGCTTTTGAAGGCAT
66 TGATTTAAAATTAATTATAAGATTATATAACTATTTAAAGTGAGTAACAAGGCTTTTGAAGGCAT
* **
221785 -AGGTGACTATAAATGGACTTTTCTTGTCAATAAATGGCTTC
131 GA-GTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTC
* * * * * *
221826 TGCTTCATGCTTT-TCAATGTAAAAATCCAATTGT-AGTCTGTTTTAACTAGAAATGAAAACAAT
1 -GCTTCATG-TTTCCCAATGCAAACATCCAATTATGAGTC-GTTTTAACCAAAAATGAAAA-AAT
* * * *
221889 -TTCT-ATTTAAAATCATTTATAAGATTAT-TAAACTACTTAAAGTGAGTAACAAGGCTTTTGAA
62 ATTTTGATTTAAAATTAATTATAAGATTATAT-AACTATTTAAAGTGAGTAACAAGGCTTTTGAA
* *
221951 GGCATGAGTGAATATAGATAGACTTTTCTTGTCAATGGATGGCATTC
126 GGCATGAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGC-TTC
* * * * * *
221998 GCTTCATGTGTCCAAATGAAAACATTCAATTATGA-TCAATTTTAACCAAAAATAAAAAATATAT
1 GCTTCATGTTTCCCAATGCAAACATCCAATTATGAGTC-GTTTTAACCAAAAATGAAAAA-ATAT
222062 TTTGATTTAAAAT
64 TTTGATTTAAAAT
222075 CATTTATNNN
Statistics
Matches: 577, Mismatches: 156, Indels: 51
0.74 0.20 0.07
Matches are distributed among these distances:
167 4 0.01
168 29 0.05
170 16 0.03
171 487 0.84
172 32 0.06
173 9 0.02
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.34
Consensus pattern (171 bp):
GCTTCATGTTTCCCAATGCAAACATCCAATTATGAGTCGTTTTAACCAAAAATGAAAAAATATTT
TGATTTAAAATTAATTATAAGATTATATAACTATTTAAAGTGAGTAACAAGGCTTTTGAAGGCAT
GAGTGACTATAAATAGACTTTTCTTGTCAATGGATGGCTTC
Found at i:223838 original size:170 final size:160
Alignment explanation
Indices: 223543--223876 Score: 316
Period size: 170 Copynumber: 2.0 Consensus size: 160
223533 TTTAAAATCA
* * *
223543 TTTATAAGATTATAAAACCATTTACAATGAGTAAGAACGCTTTTGATGGTATTTATGACTTAAAT
1 TTTATAAGATTATAAAACCATTTACAATGAGTAAGAAAGCTTTTGATGATATTGATGACTTAAAT
* * * * * * *
223608 GGACTTTTCTTGTCAATGGATGGTATCCACTTTAAATTTCTCATTGCAAACATGCAATTATGATT
66 AGACTTTTCTTCTCAATGGATGGCATCCACTTCAAATTTCTCAATGCAAACATCCAATTATGATC
*
223673 GATTTCAA-TGAAAAAGAAAAAATATTTTGC
131 GATTTCAACT-AAAAACAAAAAATATTTTGC
* * *
223703 TTTNNNNNNNNNNATAAGATTATCAAACCATTTA-AAGTGAGTAATAAAGTTTTTGATGATA-TG
1 TTT----------ATAAGATTATAAAACCATTTACAA-TGAGTAAGAAAGCTTTTGATGATATTG
* *** * * *
223766 AGTGGCTATAAATAGACTTTT-TTCTCAATGGATGGCATTTGCTTCACATTTCTTAATGGAAACA
55 A-TGACT-TAAATAGACTTTTCTTCTCAATGGATGGCATCCACTTCAAATTTCTCAATGCAAACA
*
223830 TCCAATTATGATCGATTTCAACTAAAAACAAAAAATATTTTGA
118 TCCAATTATGATCGATTTCAACTAAAAACAAAAAATATTTTGC
223873 TTTA
1 TTTA
223877 AAATTAGTTA
Statistics
Matches: 138, Mismatches: 22, Indels: 28
0.73 0.12 0.15
Matches are distributed among these distances:
160 4 0.03
169 4 0.03
170 117 0.85
171 13 0.09
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.37
Consensus pattern (160 bp):
TTTATAAGATTATAAAACCATTTACAATGAGTAAGAAAGCTTTTGATGATATTGATGACTTAAAT
AGACTTTTCTTCTCAATGGATGGCATCCACTTCAAATTTCTCAATGCAAACATCCAATTATGATC
GATTTCAACTAAAAACAAAAAATATTTTGC
Found at i:224088 original size:171 final size:169
Alignment explanation
Indices: 223904--225653 Score: 738
Period size: 171 Copynumber: 10.3 Consensus size: 169
223894 NNNNNNNNNN
* * *
223904 TTAAA-ACGAGTAACAAGGCTTTAAGAGGCATGAGCGACTATAAATAGATTTTTCTTGTCAATGG
1 TTAAAGACGAGTAACAAGGCTTTAAGAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
* * *
223968 ATGCCTTCCGCTTCATGTTTCCCAATGCAAAGATCTAATTATCATCTGTTTTAA-TGAAAAATGG
66 ATGCCTTCCGCTTCATGTTTCCCAATGCAAAAATCAAATTAT-ATCTATTTTAACT-AAAAAT--
* *
224032 AAAAAATGTCAATTTAAAATCAATTATAAGATTATAAAACTAT
127 AAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACTAT
* *
224075 TTAAAGA-GAGTAACTAGGCTTTTAA-AGGCATGGGTGACTATAAATGGACTTTTCTTGTCAATG
1 TTAAAGACGAGTAACAAGGC-TTTAAGAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * *
224138 GATGGCTTCTGCTTCATGCTTTCCC-ATGCAAAAATCAAATTATAGTCTATTTTAACTAGAAATA
65 GATGCCTTCCGCTTCATG-TTTCCCAATGCAAAAATCAAATTATA-TCTATTTTAACTAAAAATA
* * *
224202 AAAGCAATTTCCATTTAAAATCATTTATAAGATTATTAAACTAC
128 AAA--AATTTCAATTTAAAATCATTTATAAGATTATAAAACTAT
* * * *
224246 TTAAA-ACGAGTAAGAAGGCTTT-TGAAGGCATGAGTGAATATAGATGGACTTTTCTTGTCAATG
1 TTAAAGACGAGTAACAAGGCTTTAAG-AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * *
224309 GATGGCATT-CGCTTCATG-TGCCCAAATG-AAAACATCCAATTATGAT-TAATTTTAACTAAAA
65 GAT-GCCTTCCGCTTCATGTTTCCC-AATGCAAAA-ATCAAATTAT-ATCT-ATTTTAACTAAAA
** *
224370 ATAAAAAATATTTTGATTTAAAATCATTTATAAGATTATAAAACAAT
125 AT-AAAAA-ATTTCAATTTAAAATCATTTATAAGATTATAAAACTAT
* * * * * * * *
224417 TTAAAG-CGACTAACCAGTG-TTT-CGAAGGCATCAATGACAATACATAGG-CTTTTCATGTCAA
1 TTAAAGACGAGTAACAAG-GCTTTAAG-AGGCATGAGTGACTATAAAT-GGACTTTTCTTGTCAA
* * *** * **** * *
224478 TTGAGGGCCTT-TAATTTATGTTTTTTGATGCAAACATGC-AATTATTAT-TCGTTTTAA-TAAA
63 TGGA-TGCCTTCCGCTTCATGTTTCCCAATGCAAAAAT-CAAATTA-TATCT-ATTTTAACT-AA
* * * * * * * *
224539 AAATGTGAAAAAAATTGAATTCAAAATCATTGATTAGATTATAAAGCCAC
123 AAA--T-AAAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACTAT
* * * * * * * *
224589 TT-AAGGCGAGTAATAAGGATTT-CGAAGGTATGAGTGACTATAAATAGACATTTCTTGTGAATG
1 TTAAAGACGAGTAACAAGGCTTTAAG-AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * * * * * * *
224652 GATGCTTTCTGGTTCATGTTTTCTAATGTAAATAACCAAA-TATGATCTGTTTTAACAGAAAAAG
65 GATGCCTTCCGCTTCATGTTTCCCAATGCAAA-AATCAAATTAT-ATCTATTTTAAC-TAAAAA-
* * * * *
224716 AAAAATAATTT-GATTTAAAATCATTTATATGATTATTAAA-TCAC
126 TAAAA-AATTTCAATTTAAAATCATTTATAAGATTATAAAACT-AT
* * * ** * *
224760 TTAAAGA-GAGTTATAAGGCTTTAATAGTAATCAGTGACTATAAATTGACTTATT-TTGTCAATG
1 TTAAAGACGAGTAACAAGGCTTTAAGAGGCATGAGTGACTATAAATGGACTT-TTCTTGTCAATG
* * *** ** * *
224823 GATGGCATCTATTTCATGTTTTTCAATG-AAAACTCCAATTATGAT-TGATTTTAACTAAAAATG
65 GATGCCTTCCGCTTCATGTTTCCCAATGCAAAAATCAAATTAT-ATCT-ATTTTAACTAAAAAT-
* ** * *
224886 ACAAAGATTTTGATTTAAAATTATTTATAAGATTATAAAACCAT
127 A-AAAAATTTCAATTTAAAATCATTTATAAGATTATAAAACTAT
* * * * * * * *
224930 TCATAG-TGTGTAACAAGGC-TT-CGATGACATGAGTGACTATAAATGGACTTTGT-ATGCCAAT
1 TTAAAGACGAGTAACAAGGCTTTAAGA-GGCATGAGTGACTATAAATGGACTTT-TCTTGTCAAT
* * * * * *** * *
224991 -GATGCCATT-CGCTTTATATTGT-CTAATGCAAACATCCAATTATGAAGGATTTTATCAAAAAA
64 GGATGCC-TTCCGCTTCATGTT-TCCCAATGCAAAAATCAAATTAT-ATCTATTTTAACTAAAAA
* ** * *** *
225053 CAAAAAAGATTTTGATTTAAAATAATTTATAAGACGGTAAAACCAT
126 -TAAAAA-ATTTCAATTTAAAATCATTTATAAGATTATAAAACTAT
* * ********** * *
225099 TTAAAGCAAGAAGT-A-AA-GCTTTCAA-TGNNNNNNNNNNCTATAAATAGACTTTTCTTCTCAA
1 TTAAAG-ACG-AGTAACAAGGCTTT-AAGAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAA
** * * ** * * * * * ** *
225160 TGGATAG-CTTTTGCATCACGTTAT--TGATGGAAACATCCAATTAAGATCAATTCGAACCAAAA
63 TGGAT-GCCTTCCGCTTCATGTT-TCCCAATGCAAAAATCAAATT-ATATCTATTTTAACTAAAA
*
225222 ATGAGAAATAATTT-AATTTAAAATCAGTTATAAGATTATATAAAC-AT
125 AT-A-AAA-AATTTCAATTTAAAATCATTTATAAGATTATA-AAACTAT
* * * *
225269 TTAAAG-CGAGTAATAAGGCCTCTGA-AGGCATGAGTGACTATAAATGAACTTTTCTTGTCAATG
1 TTAAAGACGAGTAACAAGG-CTTTAAGAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * *** * * * * * **
225332 GATGGCTTTCACATT-ATGTTTCTTGATGTAAACATCCAATTATGATATATTTTAACCAGTAATG
65 GATGCCTTCCGC-TTCATGTTTCCCAATGCAAAAATCAAATTAT-ATCTATTTTAACTAAAAAT-
* ** *
225396 AATAAAATTTTAATAGAAAATCATTTATAAGATTATTAAAAC-AC
127 AA-AAAATTTCAATTTAAAATCATTTATAAGATTA-TAAAACTAT
* * * * * *
225440 TTAAAG-CGAATAATAAGGCTTT-CGAAGGCATGAGTGACTATAAATAGAC-TTTCTTATCAATA
1 TTAAAGACGAGTAACAAGGCTTTAAG-AGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATG
* * * *
225502 AATGGCACTT--GCTTCATGTTTCCCATTACAAACATCAAATTATGAT-TGATTTTAACTAAAAA
65 GAT-GC-CTTCCGCTTCATGTTTCCCAATGCAAAAATCAAATTAT-ATCT-ATTTTAACTAAAAA
* * * * *
225564 CAAAAAAAATT-AGATTTAAAATCATTTATAAAATTCTAAAACCAT
126 -TAAAAAATTTCA-ATTTAAAATCATTTATAAGATTATAAAACTAT
* *
225609 TTAAAG-TGAGTAACAAGGCTTT-TGATGGCAT--GTGACTATAAATGG
1 TTAAAGACGAGTAACAAGGCTTTAAGA-GGCATGAGTGACTATAAATGG
225654 NNNNNNNNNN
Statistics
Matches: 1209, Mismatches: 274, Indels: 196
0.72 0.16 0.12
Matches are distributed among these distances:
167 16 0.01
168 30 0.02
169 181 0.15
170 252 0.21
171 564 0.47
172 151 0.12
173 15 0.01
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (169 bp):
TTAAAGACGAGTAACAAGGCTTTAAGAGGCATGAGTGACTATAAATGGACTTTTCTTGTCAATGG
ATGCCTTCCGCTTCATGTTTCCCAATGCAAAAATCAAATTATATCTATTTTAACTAAAAATAAAA
AATTTCAATTTAAAATCATTTATAAGATTATAAAACTAT
Found at i:229052 original size:25 final size:25
Alignment explanation
Indices: 228993--229052 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 25
228983 GTGATCACAA
*
228993 CCACGTATATCAACTTGTGGCCTAG
1 CCACGTATATCAACTCGTGGCCTAG
* ** *
229018 CTACACATATCAA-TCCGTGGCCTTG
1 CCACGTATATCAACT-CGTGGCCTAG
229043 CCACGTATAT
1 CCACGTATAT
229053 ATCACAAACC
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (25 bp):
CCACGTATATCAACTCGTGGCCTAG
Found at i:229882 original size:170 final size:172
Alignment explanation
Indices: 229639--230113 Score: 487
Period size: 170 Copynumber: 2.8 Consensus size: 172
229629 AAAATATTTT
* * * **
229639 TATTTAAAATTAGTTATAAGATTA-TATAACCATTTAAAATGAGT-ACTAAGGCCCTTGAAGGTA
1 TATTTAAAATTATTTATAAAATTATTA-AACCATTTAAAGTGAGTAAC-AAGGCTTTTGAAGGTA
* * * * * *
229702 TGAATGACTATAAATGGAC-TTTCTTTATTAATGGATGACTTTTGCTTCATGTTTCTCAATACAA
64 TGAGTGACTATAAATGGACTTTTC-TTATCAATGAATGACATTCGCTTCATATTTCTCAATACAA
* * **
229766 AGATCTAATTATGATTTGTTTTAAC-CAAA-AAGGACAAAAATTC
128 ACATCTAATTATGATATGTTTTAACACAAACAAAAACAAAAATTC
* * *
229809 TATTTAAAATTATTTATAAAATTATTAAACCACTTAAAGGGAGTAACAAGGCTTTTGAAGGCATG
1 TATTTAAAATTATTTATAAAATTATTAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGTATG
* * * * * *
229874 AGTGACTATAAATGGACTTTTCTTCTCAATGAATGCCATTCGCTTCATATTTCTTAGTGCGAACA
66 AGTGACTATAAATGGACTTTTCTTATCAATGAATGACATTCGCTTCATATTTCTCAATACAAACA
* *
229939 TCTAATTATGATATGTTTTAACTAGAAACAAAAACAAAATTTC
131 TCTAATTATGATATGTTTTAAC-ACAAACAAAAACAAAAATTC
* * ** *
229982 AATTTAAAATCATCGATAAGAA-TATTCAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGTAT
1 TATTTAAAATTATTTATAA-AATTATTAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGTAT
* * * * * * * **
230046 AAGTCG-CTATAAATGGACTTTTCTTGTCAATGGATGGCATTCACTTCATGTTTCCCAATGTAAA
65 GAGT-GACTATAAATGGACTTTTCTTATCAATGAATGACATTCGCTTCATATTTCTCAATACAAA
230110 CATC
129 CATC
230114 CTATTGCAAG
Statistics
Matches: 252, Mismatches: 45, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
170 119 0.47
171 8 0.03
172 3 0.01
173 119 0.47
174 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (172 bp):
TATTTAAAATTATTTATAAAATTATTAAACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGTATG
AGTGACTATAAATGGACTTTTCTTATCAATGAATGACATTCGCTTCATATTTCTCAATACAAACA
TCTAATTATGATATGTTTTAACACAAACAAAAACAAAAATTC
Found at i:230063 original size:173 final size:170
Alignment explanation
Indices: 229666--230504 Score: 476
Period size: 170 Copynumber: 4.9 Consensus size: 170
229656 AAGATTATAT
* **
229666 AACCATTTAAAATGAGT-ACTAAGGCCCTTGAAGGTATGAA-TGACTATAAATGGAC-TTTCTTT
1 AACCATTTAAAGTGAGTAAC-AAGGCTTTTGAAGGTAT-AAGTGACTATAAATGGACTTTTC-TT
* * * * *
229728 ATTAATGGATGACTTTTGCTTCATGTTTCTCAATACAAAGATCTAATTATGATTTGTTTTAACCA
63 ATCAATGGATGACATTCGCTTCATGTTTCTCAATACAAACATCTAATTATGATATGTTTTAACCA
** * * **
229793 AAAAGGACAAAAATTCTATTTAAAATTATTTATAAAATTATTA
128 AAAAAAACAAAAATTCAATTTAAAATCATCGATAAAATTATTA
* * * * *
229836 AACCACTTAAAGGGAGTAACAAGGCTTTTGAAGGCATGAGTGACTATAAATGGACTTTTCTTCTC
1 AACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGTATAAGTGACTATAAATGGACTTTTCTTATC
* * * * * * * *
229901 AATGAATGCCATTCGCTTCATATTTCTTAGTGCGAACATCTAATTATGATATGTTTTAACTAGAA
66 AATGGATGACATTCGCTTCATGTTTCTCAATACAAACATCTAATTATGATATGTTTTAAC--CAA
* *
229966 ACAAAAACAAAATTTCAATTTAAAATCATCGATAAGAA-TATTC
129 A-AAAAACAAAAATTCAATTTAAAATCATCGATAA-AATTATTA
*
230009 AACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGTATAAGTCG-CTATAAATGGACTTTTCTTGT
1 AACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGTATAAGT-GACTATAAATGGACTTTTCTTAT
* * * ** * *
230073 CAATGGATGGCATTCACTTCATGTTTCCCAATGTAAACATCCT-A-T-TGCA-AGGGATTTTAAT
65 CAATGGATGACATTCGCTTCATGTTTCTCAATACAAACAT-CTAATTATG-ATA-TG-TTTTAAC
* ** ** * * *
230134 CAAAAAAGAA-AAACATTTTGATTTAAAATCATTTAGAAGATTATAA
126 CAAAAAA-AACAAA-AATTCAATTTAAAATCATCGATAAAATTATTA
* * * * * * * *
230180 AACCATTTAAAATAAGCAATAAGGCTTTTGATGAG-ATCAA-TGTCTATAAATGGGCTTTTCTTC
1 AACCATTTAAAGTGAGTAACAAGGCTTTTGAAG-GTAT-AAGTGACTATAAATGGACTTTTCTTA
* * * * ** * ********** *
230243 TCAATGGATGGCTTTCACTTCACGTTTCTTGATGCAAACATNNNNNNNNNNTATGTTTTAGCCAA
64 TCAATGGATGACATTCGCTTCATGTTTCTCAATACAAACATCTAATTATGATATGTTTTAACCAA
* ** ** *
230308 AATTAAAA-AAAAATT-GATTGT-AAATCATTTATAAGTTTATAA
129 AA--AAAACAAAAATTCAATT-TAAAATCATCGATAAAATTATTA
* * * ** * * * *
230350 AACCTTTTAAAGTGAGTAACAAGG-TATTCATAGGTATGCGTTACTATTAATGAACTTTTTTTAT
1 AACCATTTAAAGTGAGTAACAAGGCTTTTGA-AGGTATAAGTGACTATAAATGGACTTTTCTTAT
* * ** * * * *
230414 CTATAGAT-AGCATTCGCTTCACATTTCCCAATGCAAACATCTAATTATGAGGA-ATTTTAACCA
65 CAATGGATGA-CATTCGCTTCATGTTTCTCAATACAAACATCTAATTATGA-TATGTTTTAACCA
*
230477 AAAATAAA-AAAAATT-GATTTAAAATCAT
128 AAAA-AAACAAAAATTCAATTTAAAATCAT
230505 TTAAAGTAAG
Statistics
Matches: 518, Mismatches: 119, Indels: 65
0.74 0.17 0.09
Matches are distributed among these distances:
168 2 0.00
169 27 0.05
170 206 0.40
171 135 0.26
172 15 0.03
173 128 0.25
174 5 0.01
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.35
Consensus pattern (170 bp):
AACCATTTAAAGTGAGTAACAAGGCTTTTGAAGGTATAAGTGACTATAAATGGACTTTTCTTATC
AATGGATGACATTCGCTTCATGTTTCTCAATACAAACATCTAATTATGATATGTTTTAACCAAAA
AAAACAAAAATTCAATTTAAAATCATCGATAAAATTATTA
Found at i:231058 original size:169 final size:167
Alignment explanation
Indices: 230590--231555 Score: 567
Period size: 169 Copynumber: 5.6 Consensus size: 167
230580 TTCACACTTC
* * * *
230590 CCAATGTAAACATCCAATTATGAGGGATTTTAACTAAAAA-AGAAAAAATTGTTGATTTAAAATC
1 CCAATGCAAACATCCAATTATGATGGATTTTAACCAAAAACA-AAAAGATT-TTGATTTAAAATC
* * * * * * * *
230654 GTTTATAAGATTAGAAAACTATTTGAAA-CAAGTAACAAGGCATTCAACGGCATGAGTGACTATA
64 ATTTATAAGATTATAAAAC-AATT-AAAGTAAGTAACAAGGCTTTCAAAGGTATAAGTGACTATA
* * * * ********* *
230718 AATGGACTTTTCT-TGTTAATAGATAGCATTNNNNNNNNNNTTC
127 AATGAACTTTT-TAT-CTAATGGATGGCATT-CACTTCATGTTT
* *
230761 CCAATGCAAACATCTC-ATTATGATTGATTTTAATCAAAAACAAAAAAGATTTCT-ATTTAAAAT
1 CCAATGCAAACATC-CAATTATGATGGATTTTAACCAAAAAC-AAAAAGATTT-TGATTTAAAAT
** *** * * * ** *
230824 CATTTATAA-ATTTATAAAATCTTTTAAAGCCTGTAACAAGAC-TTCGATGGTACGAG-CAGCTA
63 CATTTATAAGA-TTATAAAA-CAATTAAAGTAAGTAACAAGGCTTTCAAAGGTATAAGTGA-CTA
* **
230886 TAAATGAACTTTTTATCTCAATGGATGGTATTTGC-TCTATGTTT
125 TAAATGAACTTTTTATCT-AATGGATGGCATTCACTTC-ATGTTT
** * * *
230930 CCAATGTGAAGATCCAATTATGATGGATTTTAACCAAAAACATAAAATATTTTGATTTACAATCA
1 CCAATGCAAACATCCAATTATGATGGATTTTAACCAAAAACA-AAAAGATTTTGATTTAAAATCA
* *
230995 TTTATAAGATTATAAAACCATTAAAGTAAGTAACAAGGCTTTCAAAGGTATAAGTTACTATAAAT
65 TTTATAAGATTATAAAACAATTAAAGTAAGTAACAAGGCTTTCAAAGGTATAAGTGACTATAAA-
*****
231060 TG-ACTTTTCT-TCTCAATGGATGGCATTCACTTCANNNNNN
129 TGAACTTTT-TATCT-AATGGATGGCATTCACTTCA-TGTTT
**** ** * * *
231100 NNNNTGCAAATGTCCAATTATGAGGGATTTTAACCAAAAATGAAAAAGGTTTTGATTTAAAATCA
1 CCAATGCAAACATCCAATTATGATGGATTTTAACCAAAAA-CAAAAAGATTTTGATTTAAAATCA
* * * *
231165 TCTACAAGATTACAAAACAATTTCAAA-TAAGTAACGAGGCTTTCAATGCCATGAATGGCTATAA
65 TTTATAAGATTATAAAACAA-TT-AAAGTAAGTAACAAGGC-TT---T--CA--AA-GG-TATAA
* * * * *
231229 ATGGCTATAAATGGACTTTTTTTGCTAATAGATGGCATTCACTTCATGTTT
118 GTGACTATAAATGAACTTTTTAT-CTAATGGATGGCATTCACTTCATGTTT
* * * *
231280 CCCAATGCAAACATCCCATT-TGATTGATTTGAATCAAAAACCAAAAAGATTTAT-ATTTAAAAT
1 -CCAATGCAAACATCCAATTATGATGGATTTTAACCAAAAA-CAAAAAGATTT-TGATTTAAAAT
* * ** ** * * * * * * * *
231343 CATTTGTAAAATTATAAAACCTTTTAAAGTGTGCAATAAGAC-TTCGATGGCATGAGAGACTATA
63 CATTTATAAGATTATAAAA-CAATTAAAGTAAGTAACAAGGCTTTCAAAGGTATAAGTGACTATA
* * * **
231407 AATGAACTTTTCATATTATGGATGGCATTTGCTTCATGTTT
127 AATGAACTTTTTATCTAATGGATGGCATTCACTTCATGTTT
* * * *
231448 CACAATGTAAACATCCAATTATGATGGATTTTAACTAAAAAATAAAAATATTTTGATTTAAAATC
1 C-CAATGCAAACATCCAATTATGATGGATTTTAAC-CAAAAACAAAAAGATTTTGATTTAAAATC
231513 ATTTATAAGATTATAAAACAACTTAAAGTAAGTAACAAGGCTT
64 ATTTATAAGATTATAAAACAA-TTAAAGTAAGTAACAAGGCTT
231556 NNNNNNNNNN
Statistics
Matches: 605, Mismatches: 143, Indels: 95
0.72 0.17 0.11
Matches are distributed among these distances:
167 1 0.00
168 59 0.10
169 193 0.32
170 121 0.20
171 87 0.14
172 15 0.02
173 2 0.00
175 2 0.00
177 2 0.00
178 1 0.00
179 5 0.01
180 62 0.10
181 53 0.09
182 2 0.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.33
Consensus pattern (167 bp):
CCAATGCAAACATCCAATTATGATGGATTTTAACCAAAAACAAAAAGATTTTGATTTAAAATCAT
TTATAAGATTATAAAACAATTAAAGTAAGTAACAAGGCTTTCAAAGGTATAAGTGACTATAAATG
AACTTTTTATCTAATGGATGGCATTCACTTCATGTTT
Found at i:231233 original size:10 final size:10
Alignment explanation
Indices: 231218--231242 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
231208 CAATGCCATG
231218 AATGGCTATA
1 AATGGCTATA
231228 AATGGCTATA
1 AATGGCTATA
231238 AATGG
1 AATGG
231243 ACTTTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (10 bp):
AATGGCTATA
Found at i:231834 original size:22 final size:22
Alignment explanation
Indices: 231809--231856 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
231799 TGATTTTAAC
*
231809 TAAAAACAAAAATATTTCTATT
1 TAAAAACAAAAATATTTCGATT
**
231831 TAAAATGAAAAATATTTCGATT
1 TAAAAACAAAAATATTTCGATT
231853 TAAA
1 TAAA
231857 GTCATTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.35
Consensus pattern (22 bp):
TAAAAACAAAAATATTTCGATT
Done.